Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq23030 152 5e-32 seq5432 149 6e-31 seq2765 89.7 5e-13 seq1544 86.0 6e-12 >seq23030 Length=1446 Score = 152 bits (168), Expect = 5e-32 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| || || ||| | ||||| |||||||| || Sbjct 765 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCCAGCTGCTTCCCG 824 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | ||||||| |||||||||||| |||||||| |||||||| |||||| |||| Sbjct 825 GCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 884 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | |||||| |||||||||| || | ||||| ||| ||||||||||| || Sbjct 885 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 944 Query 133644 TTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 945 TTCACAAAGATCTGCAT 961 Score = 145 bits (160), Expect = 7e-30 Identities = 153/199 (77%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 80 GGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 138 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| |||||||||||| |||||||| ||||| || |||||| || Sbjct 139 CTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCT 198 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | |||||| |||||||||| || | ||||| ||| || || ||||| | Sbjct 199 TGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTCCCCGTCAGGG 258 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||||||||| Sbjct 259 TCTTCACGAAAATCTGCAT 277 Score = 143 bits (158), Expect = 3e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| || || ||| | ||||| |||||||| || Sbjct 309 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCCAGCTGCTTCCCG 368 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | ||||||| |||||||||||| |||||||| || || || |||||| |||| Sbjct 369 GCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTG 428 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | |||||| |||||||||| || | ||||| ||| || || ||||| || Sbjct 429 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTCCCCGTCAGGGTC 488 Query 133644 TTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 489 TTCACGAAAATCTGCAT 505 Score = 143 bits (158), Expect = 3e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| || || ||| | ||||| |||||||| || Sbjct 537 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCCAGCTGCTTCCCG 596 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | ||||||| |||||||||||| |||||||| || || || |||||| |||| Sbjct 597 GCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTG 656 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | |||||| |||||||||| || | ||||| ||| || || ||||| || Sbjct 657 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTCCCCGTCAGGGTC 716 Query 133644 TTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 717 TTCACGAAAATCTGCAT 733 >seq5432 Length=86301 Score = 149 bits (164), Expect = 6e-31 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || || |||||||| || ||||| || || ||| | ||||| |||||||| || Sbjct 81657 GTAGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCCAGCTGCTTCCCG 81598 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | ||||||| |||||||||||| |||||||| |||||||| |||||| |||| Sbjct 81597 GCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 81538 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | |||||| |||||||||| || | ||||| ||| || || ||||| || Sbjct 81537 ACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTCCCCGTCAGGGTC 81478 Query 133644 TTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 81477 TTCACGAAAATCTGCAT 81461 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| || || ||| | ||||| |||||||| || Sbjct 81429 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCCAGCTGCTTCCCG 81370 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| | ||||||| |||||||||||| |||||||| ||||| Sbjct 81369 GCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTT 81329 >seq2765 Length=245924 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| |||| ||||||| ||| || ||||||||||| || |||||| || ||| Sbjct 130701 TCCTCCAGCTATCTGCCCGCACAAACCAGACGCTGCTGGTCAGGCAAGATGCCCTCGTTG 130760 Query 133566 TCGGTGATCTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || ||| ||| |||| | | | |||| ||||| ||| ||| || |||| ||||| Sbjct 130761 TCTTGGAT-TTTAGCTTTAACATTCTCAGTGGTGTCACTGGCCTCGACCTCGAAGGTGAT 130819 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| ||||| ||||| || || || || |||||||| Sbjct 130820 GGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 130855 >seq1544 Length=425498 Score = 86.0 bits (94), Expect = 6e-12 Identities = 139/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 133468 ACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCG 133526 |||||||||| |||||||| || | ||| | | | ||||| ||||| |||||| | Sbjct 5900 ACTCTTTCTGGATATTGTACTCTGTAAGAGTGAGGCCA-TCCTCTAGCTGTTTGCCCACA 5958 Query 133527 TAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-TTGAG 133585 ||| || | |||||||||||| ||||||| |||||||| || ||| || |||| Sbjct 5959 AAAACCAGACACTGCTGGTCGGGCAGGATGCCCTCCTTGTC-TTGGGTTTTAGCTTTGAC 6017 Query 133586 CTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTT 133645 | |||| ||||| |||||| || || | |||| ||| || || |||| || | Sbjct 6018 ATTCTCAGTGGTGTCACTGGGCTGGACTTCAAGAGTGATGGTCTTCCCCATCAGGGTCTC 6077 Query 133646 TACGAAAATCTGCAT 133660 || || |||||||| Sbjct 6078 CACAAAGATCTGCAT 6092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483099947572280