Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq264 277 2e-69 seq56 194 2e-44 seq19 161 1e-34 >seq264 Length=1214627 Score = 277 bits (306), Expect = 2e-69 Identities = 619/927 (67%), Gaps = 7/927 (1%) Strand=Plus/Plus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| ||| || | |||||||| || || | ||| ||| Sbjct 426227 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAATGTCCG 426286 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || ||||| || || |||| ||| ||| | | || |||| || | || || | Sbjct 426287 TGTCAAACTTATTGGCAAACAAGTGGTGCATGCGCAGCA---TCCAGTTCAAGTCACCTG 426343 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 ||| || |||||||| || || ||||| || |||||||| || || || |||| || | Sbjct 426344 CTCCAAAGACGCACACAGAACGAACGTGGACCCCGCTGCAGGGTGGGTAGGGGGCACCCT 426403 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | | || || || |||| |||||||| || || |||| || || |||||||||| Sbjct 426404 TGGAAATGTCACCTTCAAAGTACTGCCACTTGACAAATCTAGCAATCGCATGCATGTCGG 426463 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | |||| ||||| | | | | || | || || || | || | | ||| |||| Sbjct 426464 ACATGTCATACTTATGGCTTAAGGACAGCGAGCCTGGGACTTCAGGGATCCGCTGAAGAG 426523 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| || | || || || || || || || || | ||||||||| |||| | || Sbjct 426524 TGGCCCAGAGATACTCATCCGGGCTGTATGTGTCTTTGGCCCACTCCATAAACTTCTGGA 426583 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 ||| || | ||||| ||| || || ||| | || | ||| || || || | Sbjct 426584 TTTTTTCATTCTCTAGAACGTACTCCACATACTCCCTACTGACCACAAAATAGGCACTGC 426643 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 | ||||||| || | | ||||||| || ||||||| || ||||| | | Sbjct 426644 CTGAAAACAGAGGCGTTTCAAGAGGAGGGTGCACTTTGTCAGTCCCTGTGTTTGTCAGCT 426703 Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTT 162598 |||| | |||||| | | ||| ||||||| | | ||| ||| | | | Sbjct 426704 TTCCATTTACGACTGCATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATTCTCT 426763 Query 162599 CGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGG 162658 | || ||||| |||| ||| || | ||| |||| | || || || || |||| Sbjct 426764 CAGTTTCTAGGTTGTTTTCTCCCATTAACGACTTGAGCTTCCTGACAATTTCCAGGTTGG 426823 Query 162659 TCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTC 162718 | |||| ||||| || | || || ||||| || | || ||||| | | || | || Sbjct 426824 TTTTAATAGGAAAATCCATACCACAAAGATTGATCAAGTACTTCCAGTCTGCACTCATTC 426883 Query 162719 CGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGA 162778 ||| || ||||| | ||||| || || ||||| ||||||||||| || |||||||| | Sbjct 426884 TGTAGAGGTCCTGCATGCAGTTGAGGTCAGCCTGAACGCGACTCCATGAGGCGTACACCA 426943 Query 162779 CGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGG 162838 ||||||||| | | |||| ||||||||||| |||||| || | || || ||||| | Sbjct 426944 CGCTCTCCAGCTGACTGGCCACAAAGACATTACTGAAACAGGATGCGATGCCAATCACCG 427003 Query 162839 CCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGG 162896 || | || ||| || | ||| || || || || | ||| || | |||||| || Sbjct 427004 CCGCCAAAAAGGAATC--CTCTGATTTTCTGTCCACATGAATGCAATAGAAATTCTGTGG 427061 Query 162897 GGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGA 162956 ||||||||||||||| | || || | ||| || || || || || || || ||||| Sbjct 427062 CATGTAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACGACTATAGA 427121 Query 162957 ATACGCTATGGGGAACTCAGCCTCCTC 162983 ||| ||||| || ||||| ||||| || Sbjct 427122 ATATGCTATTGGAAACTCTGCCTCTTC 427148 >seq56 Length=2178077 Score = 194 bits (214), Expect = 2e-44 Identities = 236/322 (73%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| || || || || ||||| ||||| ||||| || | | Sbjct 282887 CAGAGAGGGTAAGGCAGGCTACTCCTGAGATCTTCCCGGAACCAAAGGTATTGAAGAGGC 282946 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 | | |||| || || ||||||| |||||| ||||| || || | || || || || Sbjct 282947 AATTGTAACACCCCTCATCCTCCAGGGTGGTATTCCAGAAGGTAATGGTTGAGTTCTGGA 283006 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || || ||||| | | ||| || || | ||||||||| ||||| ||||| | Sbjct 283007 GTCCTAGCTGAGTGATGTTTATCTTGTCTTTATAAGCAGGCTGGACCACAACCCCGTGGT 283066 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 || |||||| ||| ||||||||| ||| |||||| ||| || |||||||| || || | Sbjct 283067 CCTTGCTGAAGGTGATCATGTTTTCTGGGATCGTAGGCTTGATTTTCTGCCATGTCACAA 283126 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | || ||||| | | ||||| || |||||| |||| |||||||||||||||| | Sbjct 283127 TCAAGACTTCCTGGGAAGTTTGCAGGGAGCATTTTAAGGAAGCAGGTGTGTTCAGCAGCA 283186 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||||| ||||| || ||||| Sbjct 283187 CTCTTTCATCTTGGGTCACCAC 283208 Score = 87.8 bits (96), Expect = 2e-12 Identities = 171/251 (68%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 ||||||| |||| || || ||| |||||| ||| | |||| ||| |||||||||| Sbjct 280535 ACAGTTTCCCTGAGGTTGGTCACATTCCCCAGGTGCCACACTTGGCAGATCACCTCCT-- 280592 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | |||| ||||| || || ||||| || || || | ||| || ||||| || ||||| Sbjct 280593 -TCCCCAACTGACTCTTGGGGTCTTTGACCTGGAGGACGCTGGTCACAGACGTGGTCCCA 280651 Query 171623 TTACGATGT---AGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAA 171679 || ||| ||||| | | |||| || || || | || || | | ||||| Sbjct 280652 TTGGAGTGTGAGAGAACC---TCACTACTGTTCTCAATCTCCGACCCAGAGATCTTCCAG 280708 Query 171680 AATATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAG 171739 || || ||| | ||| | ||| | ||||||||||| || |||| || || ||| Sbjct 280709 AAGATCTGAGGGGGTGGGCGGGCATTGGCAGAGCAAGTGATATTTAGGTGGTCGTCAAAG 280768 Query 171740 AACTCATAGTG 171750 || | |||||| Sbjct 280769 AATTTATAGTG 280779 >seq19 Length=2718740 Score = 161 bits (178), Expect = 1e-34 Identities = 453/682 (66%), Gaps = 19/682 (3%) Strand=Plus/Plus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || | | ||||||| || | | || || | | | Sbjct 2103636 TCCAGTTAAAGTAACTAAGGTATAACTTATCGTTTTTGTCAACCTCCTTCAGATACTTTG 2103695 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| |||||||| | ||| | || | |||| Sbjct 2103696 CTAGCTCACTGGGAGAGTTATAATCCTCCACATGAATGAATGAATCTGCTGGAATATAAT 2103755 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 |||| || || || || |||| || || || | ||||| | || |||| || || Sbjct 2103756 TTTCATAGTTTTCCCTAGATGGCCCCAGAACAACAGGTACAGAGCCAGCCAGAAAAGCAT 2103815 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 |||||| ||||| || || || || |||| | |||||| ||||| | ||||| |||| Sbjct 2103816 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATGGAGTTTTCAAAGGAAAGATAAAATT 2103875 Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 | || | ||||| ||| || || || | | ||| | ||| ||||| | | | | Sbjct 2103876 TGCAAGTAGATATGGTA--GGAATCAAATTTTTATCATTCACATACTCTCCAAATGCTTG 2103933 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || ||| || || || ||| || || || ||| || || || || ||| Sbjct 2103934 CCCATAGGTATGGATTTCAATACTTTTGCTTAGTTCATTGTAATA-CTTGACCCTGGCGT 2103992 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || |||||||| |||||||| |||||||| || || Sbjct 2103993 GCTCAGGGTTCCAGTTACTTACAACCCAGCACACTAACTT-CTCTTTGCTTGGCAC---- 2104047 Query 177303 TTC-GATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCG 177360 ||| | || || | || | | || | ||| | | ||||| ||||| || ||||| | Sbjct 2104048 TTCAAACACGAA-GGGGTTTGTGCTCACCGTCAAGAAGCCATAAGGCACTTGGATATCTG 2104106 Query 177361 AGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATAC--CTTGTTTGAAGGG 177418 ||||||| | || || | || |||||||| |||| || |||| || |||| ||| Sbjct 2104107 AGTCGCGGCGATAAGTCAGAGTCAGATTGAACAGGTGCTCAATACCACTCTTTTG--GGG 2104164 Query 177419 GCTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTC 177478 ||| | |||| ||||| || |||||||| ||||| || || |||| ||| || | | Sbjct 2104165 TGTGTGAGTGGGTGATTCCAAATTCATCCAGATCCATTTCTGGAAGGGTGGCCTAGCCTG 2104224 Query 177479 CGTAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGC 177538 | ||||| | || |||| ||| || |||| ||| || | | || |||| | Sbjct 2104225 CTGAGGTAAATTAGTCAGATCCCAACTGATGTCTCGGTGATGGATCAGAACTGCATGAGA 2104284 Query 177539 TTTGTAATAAACAGATCTGTCT 177560 ||||| || | ||| | |||| Sbjct 2104285 TTTGTTGTACAGAGAACGGTCT 2104306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578048087451200