Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq38 96.9 8e-15 seq5432 86.0 1e-11 seq23030 84.2 5e-11 >seq38 Length=2414427 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || |||||| | || || ||| | || ||| | ||| Sbjct 979952 AAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCCTAGGATACAATAGAAAAT 980011 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 ||||| ||||| || || | ||||||||| || || |||||||| ||||| Sbjct 980012 ATAAAGGCCAAGATCCAGGATACGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTT 980071 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| || |||||||| ||||| | || |||||| || || || || Sbjct 980072 GCTGGCAAGCAAATGAAAGATGGACATGCTTTGTCTGACTACAACAATCAAAAGGAATCC 980131 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| ||||||||||| Sbjct 980132 ACTCTTCATCTTGTGTTGAGACTTCG 980157 >seq5432 Length=86301 Score = 86.0 bits (94), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||| |||||||| |||||||||| || ||||||| || || | ||||| ||| Sbjct 81669 ACCAGGTGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCC 81610 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCC 204848 |||||||| ||||||||||| |||| Sbjct 81609 AGCTGCTTCCCGGCGAAGATGAGCC 81585 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| ||||| |||| Sbjct 81476 AAGACCCTGACGGGGAAGACCATCACCCTGGAGGTGGAGCCCAGCGACACCATCGAGAAC 81535 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || || ||| || || || |||||| Sbjct 81536 GTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGAGGCTCATCTTC 81595 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| ||||| | || || | || |||||| |||||||||| ||| Sbjct 81596 GCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAATCT 81655 Query 206365 ACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 81656 ACTCTGCACCTGGT 81669 >seq23030 Length=1446 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| ||||| |||| Sbjct 490 AAGACCCTGACGGGGAAGACCATCACCCTGGAGGTGGAGCCCAGCGACACCATCGAGAAC 431 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || ||||| || || || ||| || || || |||||| Sbjct 430 GTCAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCCGACCAGCAGAGGCTCATCTTC 371 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| ||||| | || || | || |||||| ||||||| ||||| Sbjct 370 GCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAGTCC 311 Query 206365 ACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 310 ACTCTGCACCTGGT 297 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| ||||| |||| Sbjct 718 AAGACCCTGACGGGGAAGACCATCACCCTGGAGGTGGAGCCCAGCGACACCATCGAGAAC 659 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || ||||| || || || ||| || || || |||||| Sbjct 658 GTCAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCCGACCAGCAGAGGCTCATCTTC 599 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| ||||| | || || | || |||||| ||||||| ||||| Sbjct 598 GCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAGTCC 539 Query 206365 ACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 538 ACTCTGCACCTGGT 525 Score = 84.2 bits (92), Expect = 5e-11 Identities = 148/215 (69%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| || || || || || || || ||||| |||| ||||| Sbjct 964 AAAATG---CAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAG 908 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 ||||| |||| || ||| ||||| || || || || || || || Sbjct 907 CCCAGCGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCC 848 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 ||| || || || ||||||||||| |||||| |||| ||||| | || || | || Sbjct 847 GACCAGCAGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGAC 788 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||| ||||||| ||||| ||||| ||||| || Sbjct 787 TACAACATCCAGAAGGAGTCCACTCTGCACCTGGT 753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181016801031337