Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq56 370 1e-97 seq1074 226 3e-54 seq5617 178 2e-39 seq2188 174 2e-38 >seq56 Length=2178077 Score = 370 bits (410), Expect = 1e-97 Identities = 274/320 (86%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||||||||| ||||| || |||||||||||||| || || ||| | |||||||||||| Sbjct 283208 GTGGTGACCCAAGATGAAAGAGTGCTGCTGAACACACCTGCTTCCTTAAAATGCTCCCTG 283149 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || ||||| ||||| || ||||||| || ||||||||||||||||| || || ||||| Sbjct 283148 CAAACTTCCCAGGAAGTCTTGATTGTGACATGGCAGAAAATCAAGCCTACGATCCCAGAA 283089 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||||| || || ||||| ||||||||||| ||||||||||| |||||||| |||||| Sbjct 283088 AACATGATCACCTTCAGCAAGGACCACGGGGTTGTGGTCCAGCCTGCTTATAAAGACAAG 283029 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||||||||| ||||| |||||||| ||||||||||| || || |||||||||||| | Sbjct 283028 ATAAACATCACTCAGCTAGGACTCCAGAACTCAACCATTACCTTCTGGAATACCACCCTG 282969 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||| |||||||| ||||| |||||||| || |||||||| || ||||| ||||| || Sbjct 282968 GAGGATGAGGGGTGTTACAATTGCCTCTTCAATACCTTTGGTTCCGGGAAGATCTCAGGA 282909 Query 171372 GTGGCCTGCCTCACCCTCTC 171391 || |||||||| |||||||| Sbjct 282908 GTAGCCTGCCTTACCCTCTC 282889 Score = 307 bits (340), Expect = 1e-78 Identities = 237/282 (84%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 171388 TCTCNGTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCA 171447 || | || |||||||| || || || || |||||||| ||||| |||||||| || |||| Sbjct 280805 TCCCAGTACAGCCCACAGTATTCCTTCACTATAAATTCTTTGACGACCACCTAAATATCA 280746 Query 171448 CCTGTTCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAA 171507 | || ||||||||||||||||| || |||||||| || |||||||| || ||||| || | Sbjct 280745 CTTGCTCTGCCAATGCCCGCCCACCCCCTCAGATCTTCTGGAAGATCTCTGGGTCGGAGA 280686 Query 171508 TTGAAAACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTAC 171567 |||| |||||||| |||||||| || || || ||||| || || ||||| ||||| || | Sbjct 280685 TTGAGAACAGTAGTGAGGTTCTCTCACACTCCAATGGGACCACGTCTGTGACCAGCGTCC 280626 Query 171568 TCCAAGTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACC 171627 |||| || ||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 280625 TCCAGGTCAAAGACCCCAAGAGTCAGTTGGGGAAGGAGGTGATCTGCCAAGTGTGGCACC 280566 Query 171628 TGGGAAATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 |||| ||||| || ||| | ||||||||||| ||||| |||| Sbjct 280565 TGGGGAATGTGACCAACCTCAGGGAAACTGTGAGCAAAGGTA 280524 >seq1074 Length=565731 Score = 226 bits (250), Expect = 3e-54 Identities = 558/838 (67%), Gaps = 29/838 (3%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| ||||||||| | || |||| || | |||||| ||||| | | |||||| Sbjct 478347 GTATTCTCTGGTGGTCGTGATTGGTCTGCTGGGCAATCTGATGGTGGTGGTGATCCTCAC 478406 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| |||||||||||| |||| ||||||||||||||||||||||| |||| || ||| Sbjct 478407 AAAATACAAGAGGCTCCGGATTATGACCAACATCTTCCTGTTCAATTTGGCAATTTCTGA 478466 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 | |||| | ||||||| || || || ||||||||| | | || |||| || Sbjct 478467 CTTGCTCTTTCTTTTCACTCTGCCATTCTGGATTCAC-TATGTTTGGCGGGA-----TGA 478520 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 ||||| | ||| |||||||||||||| | | || ||||| || || |||| Sbjct 478521 GTGGGTTTTTGGCCATCACATGTGTAAGTTCCTCATTGGGCTTTGTTACACGGGCTTGTA 478580 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909 |||||| || | || |||||||||||||| || ||| ||||||| || | || |||| Sbjct 478581 CAGCGAGATCTTTTTCATCATCCTGTTGACGCTAGACCGGTATCTGGCCATCGTCCACGC 478640 Query 8910 GGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCTG 8969 ||| | | | ||| || | | |||||| | |||| || | |||| Sbjct 478641 TGTGTTTGCCCTTCGAACCCGGACCGTCACTTTTGGCATCATAACCAGTGTCTTCACCTG 478700 Query 8970 GATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCCAATAATGCCAC 9029 | ||||| | | | | | || | || || |||||||| ||| | | | | | Sbjct 478701 GGGCCTGGCAGGGCTAGCAGCCCTCCCTGAATTTATCTTCCATGGGTTCCAAGAGGAATT 478760 Query 9030 AGGCAAGGGGGTCTGCCAAGCCTCCTACACAG------------ACTTTTGGAAGGGGGT 9077 || || ||||||| | | |||| ||| | | |||||| | Sbjct 478761 TGGTCAGTATGTCTGCCTTCCTTTCTACCCAGAAGCAGCAGAAAATATCTGGAAGAGTAC 478820 Query 9078 TGATGTTACCAGCATGACCATGGTCACCCTCATCCTGCCTTTGCTTATCATGGCCTTCTG 9137 ||||| || |||| || | | ||| ||||||||||| || ||||| |||| Sbjct 478821 CCATGTTCTGAGAATGAATATCTTGAGTCTCGCTCTGCCTTTGCTCATTATGGCTGTCTG 478880 Query 9138 CTACTGGAAAATCATCAAGGTCCTCCTCA-AGGCCCACAACAGGTCGAGAAACCTGCACG 9196 ||||| |||||| || || || | | |||| |||| || ||| | | Sbjct 478881 CTACTCAGGAATCATTAAAACACTGCTGAGATGCCC-TAACA---AGAAAAAGTACAAGG 478936 Query 9197 CCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCTACAACG 9256 || || ||||||||| |||| ||||| | | ||| || || ||| || |||||| Sbjct 478937 CCATCCGGCTCATTTTTGTCATCATGGTGGTCTTTTTCGTTTTCTGGGCACCTTACAACC 478996 Query 9257 TCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTGGG-CCAGACTGTGA--AGCGC 9313 | | ||| |||| ||| | ||| || | ||||| |||| |||||| || || Sbjct 478997 TGGTTCTCTTTTTCTCCACTTTTCAAACAACCTTCCTTGGGACCAG-CTGTGATCAGAGC 479055 Query 9314 GGCGCAGGGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCG 9373 || | ||||||||||||| ||||| | ||||||||||||| ||| |||||||| | Sbjct 479056 -AAACA-GCTGGACATGGCCCTGCTGGTGACAGAGATGATCGCCTACACGCACTGCTGTG 479113 Query 9374 TCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCCAACAGAACCTTCAGGACTT 9431 ||||||| || |||||||| ||||| ||||| | |||||| ||||||| || |||| Sbjct 479114 TCAACCCTGTGATCTACGCATTTGTTGGCGAGAGGTTCCAGAAGAACCTCCACCACTT 479171 Score = 127 bits (140), Expect = 2e-24 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||||||||||||| | |||| || | ||||| ||||||| |||| |||||||| Sbjct 436744 GTACTCTCTGGTGTTTGTCATTGGCCTGGTCGGCAACATCCTGGTGGTCCTGGTCCTCAT 436685 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | ||||||||||||| | ||||||| ||||| ||| ||||||||||| || ||| Sbjct 436684 GCAATACAAGAGGCTCAAAAGTATGACCAGCATCTACCTTCTCAACCTGGCCATTTCTGA 436625 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 |||||| | | ||||| || ||||| |||||| ||| Sbjct 436624 CCTGCTCTTCCTCTTCACGCTGCCCTTCTGGATTGACT 436587 Score = 82.4 bits (90), Expect = 9e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| ||||| | ||| | ||| ||||||||| ||| ||||||||||||||||| | Sbjct 436039 TGGACCTGGCCATACAAGTGACAGAGGTGATCGCCTACACGCACTGCTGCGTCAACCCTG 435980 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCCAACAGAACCT 9422 | ||||||| ||||| ||| | | ||||| | || |||| Sbjct 435979 TGATCTACGTCTTTGTCGGCCAGAGGTTCCGAAAGTACCT 435940 >seq5617 Length=80173 Score = 178 bits (196), Expect = 2e-39 Identities = 138/167 (83%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| |||||||| ||||||||| |||||||||||| Sbjct 30538 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACCTGGAGGAGGTGA 30479 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| ||| ||||| ||||| |||||||| || |||| Sbjct 30478 TGCCCCAGGCTGAGAACCAC------------GGCCCAGACATCAAGGAGCACGTGAACT 30431 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||||||||| |||||||| |||||||||||||||| ||| Sbjct 30430 CCCTGGGGGAAAAGCTGAAGACCCTCCGAGTGAGGCTGCGGCGCTGT 30384 Score = 104 bits (114), Expect = 3e-17 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 178081 AGTCTGAAAACAATTGCACTCACTTTCCAACCAGTTTGCCTCACATGCTCCATGAGCTCC 178140 ||||||| |||| ||||| ||||| |||||||| |||| ||||||||||||||||||| Sbjct 31805 AGTCTGAGAACAGCTGCACCCACTTCCCAACCAGCCTGCCCCACATGCTCCATGAGCTCC 31746 Query 178141 GGGCCGCTTTTAGCAGAGTAAAGACttttttt 178172 | ||||| || ||||| || |||||||| ||| Sbjct 31745 GAGCCGCCTTCAGCAGGGTGAAGACTTTCTTT 31714 Score = 98.7 bits (108), Expect = 1e-15 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || ||||| |||||||| |||||||||||||| || || || ||||||| Sbjct 28177 AGCTCCAAGAGAAAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 28118 Query 178522 TAGAAGCTTACATGACAACAAAAATGA 178548 ||||||| || |||||||| || |||| Sbjct 28117 TAGAAGCCTATATGACAACGAAGATGA 28091 Score = 96.9 bits (106), Expect = 4e-15 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 178173 CAAATGAAGGACCAGCTGGACAACATGTTGTTAAATGGGTCCCTGCTGGAAGACTTTAAG 178232 |||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||| Sbjct 30892 CAAATGAAGGACCAGCTGGACAACATGTTGTTGAACGGGTCCCTGCTGGAGGACTTTAAG 30833 Query 178233 G 178233 | Sbjct 30832 G 30832 >seq2188 Length=317451 Score = 174 bits (192), Expect = 2e-38 Identities = 138/166 (83%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | ||||||||||||||| | ||||||||| |||||||| Sbjct 256326 CTTCAGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAA 256267 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || |||||||||||||| ||||| ||||||||||||||||| || ||||| |||| Sbjct 256266 GGGCACACCCAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTT 256207 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATG 147147 ||||||| |||||||| ||| ||||| || ||||| |||||| Sbjct 256206 CACCACGTAGAACTGGCAGAGGGCATGGCAGGGAGGCAGAGCCATG 256161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583100731720800