Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq23030 123 2e-23 seq5432 114 1e-20 >seq23030 Length=1446 Score = 123 bits (136), Expect = 2e-23 Identities = 145/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| ||| | || ||||||||||| || || || Sbjct 770 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAA 829 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | || | || |||||||||| |||||| ||| | | Sbjct 830 GATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 889 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | |||||||||| ||||| || || || |||| || ||||| Sbjct 890 CTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 949 Query 35725 AAATATCTGCATTCTG 35740 ||| ||||||||| || Sbjct 950 AAAGATCTGCATTTTG 965 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| ||| | || ||||||||||| || || || Sbjct 314 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAA 373 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | || | || ||| || ||| |||||| ||| | | Sbjct 374 GATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTGACGTT 433 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | |||||||||| ||||| || || ||||||| || ||||| Sbjct 434 CTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCAC 493 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 494 GAAAATCTGCAT 505 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| ||| | || ||||||||||| || || || Sbjct 542 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAA 601 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | || | || ||| || ||| |||||| ||| | | Sbjct 602 GATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTGACGTT 661 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | |||||||||| ||||| || || ||||||| || ||||| Sbjct 662 CTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCAC 721 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 722 GAAAATCTGCAT 733 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | | || || | || ||||||||||| || ||||| Sbjct 86 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 145 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | || | || |||||| ||| |||||| ||| | | Sbjct 146 GATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTT 205 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | |||||||||| ||||| || || ||||||| || ||||| Sbjct 206 CTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCAC 265 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 266 GAAAATCTGCAT 277 >seq5432 Length=86301 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| || | || ||| ||| | || ||||||||||| || || || Sbjct 81651 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCGAAG 81592 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | || ||||||||| | || | || |||||||||| |||||| ||| | | Sbjct 81591 ATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTC 81532 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||||| | |||||||||| ||||| || || ||||||| || ||||| Sbjct 81531 TCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTCCCCGTCAGGGTCTTCACG 81472 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 81471 AAAATCTGCAT 81461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450494402652760