Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq373 109 4e-19 seq98 89.7 4e-13 seq778 82.4 6e-11 >seq373 Length=1017533 Score = 109 bits (120), Expect = 4e-19 Identities = 91/109 (83%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 ||||||||||| ||||| |||||| || ||||| ||||| || ||||| ||||| ||||| Sbjct 536132 CAAGAAGTTCAGATTAC-AGAAGCCCGCTGTTTCTATGGCTTCCAAATCGCCATGGAAAA 536074 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||||||||| || || || || ||||| |||||| Sbjct 536073 CATACATTCTGAAATGTACAGTCTCCTCATTGACACTTACATTAAAGAT 536025 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 44113 TGATTCTT--TTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCA 44170 ||| |||| | |||||||| |||| || ||||| | |||||||| || || ||||| Sbjct 534013 TGACTCTTAATAGGAGAACGGGTTGTAGCCTTTGCCGCAGTGGAAGGAATCTTTTTTTCT 533954 Query 44171 GGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTT 44230 || || ||||| ||||||| ||| | ||||||||||| ||||||| || | || ||| Sbjct 533953 GGCTCTTTTGCATCCATATTCTGGCTCAAGAAACGAGGACTGATGCCCGGCCTCACATTT 533894 Query 44231 TCAAATGAGTTAATAAGTCGTGATGA 44256 || ||||| | || || | ||||| Sbjct 533893 TCCAATGAACTTATTAGCAGAGATGA 533868 >seq98 Length=1799927 Score = 89.7 bits (98), Expect = 4e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| | Sbjct 791763 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAAGGGAAAACAAATTTCTTTGAGA 791704 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| |||||||| Sbjct 791703 AACGAGTTTCAGAGTATCAGCG 791682 >seq778 Length=694618 Score = 82.4 bits (90), Expect = 6e-11 Identities = 115/162 (71%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599 || ||| ||||||||| || || | |||||| | || || ||||| ||||| ||||| Sbjct 76184 AACAGTGGTTTGCACATCATCATCTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGG 76125 Query 19600 T------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653 ||||| | ||||| ||||||||||| ||||| || | ||||| ||| | Sbjct 76124 AGCATGGCTGGTAGCACAGGAGTTCATGACACTGTCGTCAACCAGTTACTGTCCAAAATT 76065 Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695 || || || | || ||||| || || ||||| ||||| ||| Sbjct 76064 GATGGGGTAGAGCAGCTGAACAACATCTTAGTCATTGGTATG 76023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397198798397485