Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq23030 163 3e-35 seq5247 154 2e-32 seq38 140 4e-28 seq5432 131 2e-25 seq1544 105 8e-18 seq2765 102 9e-17 seq4354 93.3 5e-14 seq148 87.8 2e-12 seq469 82.4 9e-11 seq423 82.4 9e-11 >seq23030 Length=1446 Score = 163 bits (180), Expect = 3e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| || ||||||||||| || || || ||||| ||| | | Sbjct 962 AATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 903 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | || | ||||| || || |||||||||||||| || || || ||||| Sbjct 902 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 843 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || || || || ||||| || ||||||| || ||||| | ||||| || Sbjct 842 GCAGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAA 783 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| || || ||| ||||||| | ||||| Sbjct 782 CATCCAGAAGGAGTCCACTCTGCACCTGGTCCTGCGTCTCAGAGGTGG 735 >seq5247 Length=92488 Score = 154 bits (170), Expect = 2e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || |||||||||||||| || Sbjct 12694 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTTGAGTCCAGT 12635 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | || |||||||| || ||||| ||||| || || || |||||| Sbjct 12634 GACACCATTGAGAATGTTAAAGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGACCAG 12575 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || |||| |||||||| || || || || || |||| || || || ||||||| ||| Sbjct 12574 CAATGTCTGATTTTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTACAAT 12515 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 |||| | || ||||| || || Sbjct 12514 ATCCAGAGAGACTCCACCCTGCA 12492 >seq38 Length=2414427 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || || ||||| || ||||| || ||||| |||||||| | Sbjct 979937 ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCCTAG 979996 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | ||||| || || ||||| | ||| ||||||||||| || ||| Sbjct 979997 GATACAATAGAAAATATAAAGGCCAAGATCCAGGATACGGAAGGAATTCCTCCTGATCAG 980056 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || |||||||| |||||| | | |||| | | | | | ||||| || Sbjct 980057 CAAAGACTGATCTTTGCTGGCAAGCAAATGAAAGATGGACATGCTTTGTCTGACTACAAC 980116 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||||||||||||||| || ||| | ||||| ||||| Sbjct 980117 AATCAAAAGGAATCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 980163 >seq5432 Length=86301 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| || || || ||||| || || || ||||| ||| | | Sbjct 81461 ATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTGGAGCCCAGC 81520 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || |||||||||||||| || || || |||||| Sbjct 81521 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 81580 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || || || ||||| || ||||||| || ||||| | ||||| || Sbjct 81581 CAGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAAC 81640 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCG 27620 |||| || ||||| ||||| || || ||| |||| Sbjct 81641 ATCCAGAAAGAATCTACTCTGCACCTGGTCCTGCG 81675 >seq1544 Length=425498 Score = 105 bits (116), Expect = 8e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| |||| || | || ||||| || |||||||| || || | || Sbjct 6092 ATGCAGATCTTTGTGGAGACCCTGATGGGGAAGACCATCACTCTTGAAGTCCAGCCCAGT 6033 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || || ||| | || ||||||| || ||||||||||| || | || |||||| Sbjct 6032 GACACCACTGAGAATGTCAAAGCTAAAACCCAAGACAAGGAGGGCATCCTGCCCGACCAG 5973 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| |||| |||||| || || || || ||||||| | || || |||| || ||| Sbjct 5972 CAGTGTCTGGTTTTTGTGGGCAAACAGCTAGAGGATGGCCTCACTCTTACAGAGTACAAT 5913 Query 27586 GTCCAAAAGGA 27596 |||| || || Sbjct 5912 ATCCAGAAAGA 5902 >seq2765 Length=245924 Score = 102 bits (112), Expect = 9e-17 Identities = 133/182 (73%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || | ||||| ||| | || Sbjct 130855 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCTTCGAGGTCGAGGCCAGT 130796 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || || ||| | || |||||||| || ||||| ||||| || || |||||| Sbjct 130795 GACACCACTGAGAATGTTAAAGCTAAAATCCAAGACAACGAGGGCATCTTGCCTGACCAG 130736 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGA--TCGTACCCTAGCAGACTATA 27583 |||||||| ||| ||| || | | || |||||||| || |||| ||||||| | Sbjct 130735 CAGCGTCTGGTTTGTGCGGGCAGATAGCTGGAGGATGACGGCGCTCCCT--CAGACTACA 130678 Query 27584 AT 27585 || Sbjct 130677 AT 130676 >seq4354 Length=129960 Score = 93.3 bits (102), Expect = 5e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || || ||||||||| | || Sbjct 111275 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 111334 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||||| ||| | || |||||||| || ||||||||||| Sbjct 111335 GACACCATTGAGAATGTTAAAGCTAAAATCCAAGACAAGGAGGG 111378 >seq148 Length=1551796 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/199 (71%), Gaps = 8/199 (4%) Strand=Plus/Plus Query 27436 AAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT-GCAAATTTGAAGGCTAAAAT 27494 |||| || ||||| ||||| | || |||| |||| | |||| | ||||| || || Sbjct 92306 AAGAACATCACTCTCAAGGTTAAATCCTCAGATA-CATTAGAAAATGTAAAGGCCAAGAT 92364 Query 27495 TCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACT 27554 |||||||||| ||||||||||| || |||| | || |||||||| || |||||||| Sbjct 92365 CCAGGACAAGGCAGGAATTCCTCCTGATCAGCTAAGACTCATTTTTGCCGGCAAGCAACT 92424 Query 27555 CGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTC-TTCATCTAG 27613 || |||| | || | ||||| || | ||||||||| ||| | ||||||| | Sbjct 92425 GGAAGATGGACTTAGTGT----GACTACAA-CTTCAAAAGGAACCCAAACTTTCATCTTG 92479 Query 27614 TCTTGCGTCTTCGCGGTGG 27632 | || | |||| ||||| Sbjct 92480 TGTTAAGACTTCATGGTGG 92498 >seq469 Length=924496 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 |||||| |||| | |||||||| ||||| ||| ||||| ||||| | | |||| Sbjct 588614 ACCATTATCAATTTGGCTCAGAATTTTGTGGGTAGCAATAATTTGAACCTCTTGCAGCCT 588555 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| |||||||| ||| |||| |||||||||||| |||| || | || |||||| Sbjct 588554 ATTGGTCAGTTTGGTACCAGGCTGCATGGTGGCAAGGATTCTGCTAGTCCTCGATACATC 588495 Query 32245 TTCAC 32249 ||||| Sbjct 588494 TTCAC 588490 >seq423 Length=960542 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 || ||||| || | |||||||||||||| || || ||| | ||||| || |||| Sbjct 862864 ACTATTGTGAATTTGGCTCAGAACTTTGTGGGAAGTAACAACATTAACTTGCTTCAGCCT 862805 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| |||||||| || ||||| |||||||| |||||||| ||| | ||||| || Sbjct 862804 ATTGGTCAGTTTGGAACTCGGCTTCATGGTGGCAAAGATGCTGCAAGCCCTCGTTATATT 862745 Query 32245 TTCAC 32249 ||||| Sbjct 862744 TTCAC 862740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569931877858640