Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq56 187 2e-42 seq2359 143 2e-29 seq534 122 7e-23 seq2188 104 2e-17 >seq56 Length=2178077 Score = 187 bits (206), Expect = 2e-42 Identities = 195/256 (76%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1270 aaaCGCCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAA 1329 |||| | || ||||| | ||||| |||||||| ||| | || | | | |||||||| Sbjct 283147 AAACTTCCCAGGAAGTCTTGATTGTGACATGGCAGAAAATCAAGCCTACGATCCCAGAAA 283088 Query 1330 ACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAA 1389 ||||| ||| || || || |||||||||||||| || ||||| || || ||||| || | Sbjct 283087 ACATGATCACCTTCAGCAAGGACCACGGGGTTGTGGTCCAGCCTGCTTATAAAGACAAGA 283028 Query 1390 TGAACATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGG 1449 | ||||| ||| |||| ||||| || ||| |||| || ||||||||||| || || ||| Sbjct 283027 TAAACATCACTCAGCTAGGACTCCAGAACTCAACCATTACCTTCTGGAATACCACCCTGG 282968 Query 1450 ATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAA 1509 | ||||| ||||| ||||| || | || || || ||||| || |||||||| |||||| Sbjct 282967 AGGATGAGGGGTGTTACAATTGCCTCTTCAATACCTTTGGTTCCGGGAAGATCTCAGGAG 282908 Query 1510 TAGGGTGTCTAACCCT 1525 ||| || || ||||| Sbjct 282907 TAGCCTGCCTTACCCT 282892 >seq2359 Length=294480 Score = 143 bits (158), Expect = 2e-29 Identities = 289/423 (68%), Gaps = 12/423 (3%) Strand=Plus/Plus Query 2263 AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCA-- 2320 ||||||||| | || |||||||| || ||||| ||| || |||| | ||||| Sbjct 165069 AAACAGAATTTGGTGATTATGGGTAGGAAGACCCCGTTCTCCATTCC--TGAAAAGATTC 165126 Query 2321 GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTG 2380 | ||||| || |||||| ||| | |||||||||||| | || || | | |||| | Sbjct 165127 GACCTTTAAAGGACAGAAATAATTTAGTTCTCAGTAGAGAACTCAAGTAACGTCCACAAG 165186 Query 2381 GGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAAT 2440 | ||||| ||| || | |||||| | ||| | || || | ||| | |||||||| Sbjct 165187 GAGCTCATTTTCTTCCCAAAAGTTTGGATGATGCCCTAACACTTACTGCACAACCAGAAT 165246 Query 2441 TAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCA 2500 ||| | | | |||| | | |||||||| | || || || ||||| ||| |||| |||| Sbjct 165247 TAACAAATAAAATGGACATGGTTTGGATAGTGGGAGGCAGTTCTGTTTATAAGGA-AGCA 165305 Query 2501 --TTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATG 2558 ||||| | || | | | || ||| | ||||| | |||| |||||||| | Sbjct 165306 AGGAACAAG-CCAGGCCATCTTAGACTATTTGTGACAAGTAGCATGCAGGAATTTGAAAG 165364 Query 2559 TGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGG 2618 ||| |||| || ||||||| | || | | | |||| || | |||| |||||| Sbjct 165365 TGACACATTTTTTCCAGAAACTGATTT----GGAGAAAAACTTCTCCCAGAATATCCAGG 165420 Query 2619 TGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaaa 2678 ||||| |||| || || || || || || ||| ||||||||||| |||||||||| Sbjct 165421 TGTTCTTTCTGATGTCCAGGAGGAGAAAGGCCTTAAGTACAAATTTGAAGTATATGAAAA 165480 Query 2679 aaa 2681 || Sbjct 165481 GAA 165483 >seq534 Length=851479 Score = 122 bits (134), Expect = 7e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 516187 GTAGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 516128 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 516127 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 516068 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 516067 ATCGCCCTGTGGATGACTGA 516048 >seq2188 Length=317451 Score = 104 bits (114), Expect = 2e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || || || | ||| || |||||||| || | || ||||||||| | || || || Sbjct 256322 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 256263 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 |||||||| ||||||||| | ||||||||||||| ||||| || ||||| ||||| | Sbjct 256262 ACACCCAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 256203 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATG 118695 || || ||||| | | | || || ||||||||| ||||| Sbjct 256202 ACGTAGAACTGGCAGAGGGCATGGCAGGGAGGCAGAGCCATG 256161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414208583902708