Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq23030 167 5e-36 seq5432 158 3e-33 seq38 156 1e-32 seq5247 134 3e-26 seq148 107 4e-18 seq976 102 2e-16 seq2469 93.3 1e-13 seq4713 91.5 3e-13 seq1814 86.0 1e-11 seq4354 84.2 5e-11 seq1269 84.2 5e-11 >seq23030 Length=1446 Score = 167 bits (184), Expect = 5e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||||||||| || |||||||| || || | ||||| | ||||| Sbjct 750 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCC 809 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| || | || ||||| || || | || ||||||||| Sbjct 810 TCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 869 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| | || ||||| || ||||| ||| Sbjct 870 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 929 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| ||||| | ||||||||| Sbjct 930 TTGCCGGTCAGGGTCTTCACAAAGATCTGCATTTT 964 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || |||||||| |||||||| ||||| | ||| || | |||||| Sbjct 66 AGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 125 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| || | || ||||| || || | || ||||| ||| Sbjct 126 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTATCC 185 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| | || ||||| || ||||| ||| Sbjct 186 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 245 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 246 TTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 277 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||||||||| || |||||||| || || | ||||| | ||||| Sbjct 294 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCC 353 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| || | || ||||| || || | || || || ||| Sbjct 354 TCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCTTTATCC 413 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| | || ||||| || ||||| ||| Sbjct 414 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 473 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 474 TTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 505 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||||||||| || |||||||| || || | ||||| | ||||| Sbjct 522 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCC 581 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| || | || ||||| || || | || || || ||| Sbjct 582 TCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCTTTATCC 641 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| | || ||||| || ||||| ||| Sbjct 642 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 701 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 702 TTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 733 >seq5432 Length=86301 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||| || ||||| |||||||| || || | ||||| | ||||| Sbjct 81672 AGGACCAGGTGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCC 81613 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| || | || ||||| || || | || ||||||||| Sbjct 81612 TCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 81553 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| | || ||||| || ||||| ||| Sbjct 81552 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 81493 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 81492 TTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 81461 Score = 93.3 bits (102), Expect = 1e-13 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||||||||| || |||||||| || || | ||||| | ||||| Sbjct 81444 AGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCC 81385 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||||||| || |||||||| || | || ||||| || || | || ||||| Sbjct 81384 TCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTT 81329 >seq38 Length=2414427 Score = 156 bits (172), Expect = 1e-32 Identities = 173/227 (76%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCG-CAAGGG 210951 ||||||||| | ||||| ||||||||||| || ||||| |||| || || | ||| | Sbjct 980158 ACGAAGTCTCAACACAAGATGAAGAGTGGATTCCTTTTGATTGTTGTAGTCAGACAAAG- 980100 Query 210952 TCCT-TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACT 211010 | | |||||||| || |||||||| || ||||| || | ||| || |||||||||| | Sbjct 980099 -CATGTCCATCTTTCATTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATT 980041 Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 |||||| | ||||||||||| || | ||||| || || || || |||||||||| Sbjct 980040 CCTTCCGTATCCTGGATCTTGGCCTTTATATTTTCTATTGTATCCTAGGGTTCAACCTCG 979981 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 |||||||| ||||| ||||| || || || || || | |||||| || Sbjct 979980 AGAGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATCTT 979934 >seq5247 Length=92488 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || ||||| ||| | ||||| || || || | || || | |||||| Sbjct 12483 AGCACCAAGTGCAGGGTGGAGTCTCTCTGGATATTGTAGTCTGAGAGAGTGCGGCCATCT 12542 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| ||||| || || || || | ||| |||||||| || | || || ||||| Sbjct 12543 TCCAGCTGTTTGCCGGCAAAAATCAGACATTGCTGGTCAGGTGGGATGCCCTCTTTGTCT 12602 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||| || || || ||||||||| | |||||||| || ||||| ||| Sbjct 12603 TGGATTTTAGCTTTAACATTCTCAATGGTGTCACTGGACTCAACCTCAAGGGTGATGGTC 12662 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| ||||| | |||||| Sbjct 12663 TTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 12694 >seq148 Length=1551796 Score = 107 bits (118), Expect = 4e-18 Identities = 145/197 (74%), Gaps = 9/197 (5%) Strand=Plus/Minus Query 210895 GAAGTCTTAGGACAAGGTGAA-GAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGT 210952 ||||||||| ||||| |||| | ||| || ||||| | ||| || || | | | | Sbjct 92491 GAAGTCTTAACACAAGATGAAAGTTTGGGTTCCTTTTGAA-GTTGTAGTCACACTAAG-- 92435 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 |||||||||||| |||||||| || || || || | | | || |||||||||| ||| Sbjct 92434 ---TCCATCTTCCAGTTGCTTGCCGGCAAAAATGAGTCTTAGCTGATCAGGAGGAATTCC 92378 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 | |||||||||||||||| || || ||||| | || || ||| || ||||| ||| Sbjct 92377 TGCCTTGTCCTGGATCTTGGCCTTTACATTTTCTAATGTATCTGAGGATTTAACCTTGAG 92318 Query 211073 AGTGATCGTCTT-TCCC 211088 |||||| |||| |||| Sbjct 92317 AGTGATGTTCTTCTCCC 92301 >seq976 Length=608597 Score = 102 bits (112), Expect = 2e-16 Identities = 155/216 (72%), Gaps = 5/216 (2%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || |||| || | | ||| || || | ||| || ||| || Sbjct 187554 AGGACCAGGTGCAGGGTTGACT--TTCTCAAGGTTGTAGTCAGAAAGAGTGAGGCCACCT 187611 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG-TCAGGAGGAACTCCTTCCTTGTC 211021 ||||| ||||||||||| ||||| || ||| ||| | |||||| | |||| | || Sbjct 187612 TCCAGTTGCTTGCCTGCAAAGATGAGCATTTGCTGGCTAAGGAGG-ATGCCTTTTTCATC 187670 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||||||||| ||||| || || ||||| ||| | ||| ||||| || ||||| | Sbjct 187671 CTGGATCTTGGCCTTCACATTCTCCATGGTATCACTG-GTTCCACCTCTAGGGTGATGAT 187729 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || |||||| | ||||| | |||||||| Sbjct 187730 CTTTCAGGTCAGAGTCCTCACAAAGATTTGCATTTT 187765 >seq2469 Length=280306 Score = 93.3 bits (102), Expect = 1e-13 Identities = 145/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 210915 AGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCAT-CTTCCAGCTGCTT 210973 || ||||||||||| |||||||| | || | || || |||| ||||| || || Sbjct 1771 AGGGTGGACTCTTTCTGGATGTTGTTGTCTGAGAGAGTTTGACCATGCTTCC-TCTCTTT 1829 Query 210974 GCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTG 211033 |||||| || || || | || |||||||| | | ||||||||||| ||||| || Sbjct 1830 GCCTGCAAACATCAGATGCTGCTGGTCAGGTGAGATGCCTTCCTTGTCTTGGATTTTGGT 1889 Query 211034 TTTCACGTTTTCGATGGTGTCA--GAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||| || || | |||||||||| | |||| |||| ||| || || ||||| || | Sbjct 1890 TTTGACATTCTTGATGGTGTCACTGGGCTT--GACCTTGAGGGTAATGGTCTTGCCTGCA 1947 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| |||||| Sbjct 1948 AGGGTCTTCACAAAGCTCTGCAT 1970 >seq4713 Length=113386 Score = 91.5 bits (100), Expect = 3e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || |||||||| |||||||| ||||| | ||| || | |||||| Sbjct 51593 AGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 51652 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTC 211000 ||||||||||||||||| ||||| || | || ||||| Sbjct 51653 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTC 51690 >seq1814 Length=373982 Score = 86.0 bits (94), Expect = 1e-11 Identities = 159/223 (71%), Gaps = 9/223 (4%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCG-CAAGGGTCCT 210955 ||||| | ||||||| || ||||||||| ||| | ||| || | || | ||| | | | Sbjct 117013 AGTCTCAACACAAGGTAAACAGTGGACTCCTTT-GAATGCTACAGTCAGGCAAAG--CAT 116957 Query 210956 -TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTT 211014 ||||||| |||| | |||||| | ||||| || | ||| || || |||| | ||||| Sbjct 116956 GTCCATCT-CCAGTTTCTTGCCAGT-AAGATCAGTCTTTGCTGATCGAGAGGGAGTCCTT 116899 Query 211015 CCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAG 211074 ||| ||||||||||| || || |||| || || || | |||| ||||| ||| Sbjct 116898 CCTCATCCTGGATCTTGGCCTTTACATTTTTTATTGTATCCAATGTTTCCACCTCAAGAA 116839 Query 211075 TGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 |||| | |||||| | | || |||||||| | || ||| || Sbjct 116838 TGAT-GGGTTTCCCCT-AAAGGTTTTACAAATATCTTCATCTT 116798 >seq4354 Length=129960 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || |||||||| ||||| || ||| || || || ||||||||| | ||||||||| Sbjct 111378 CCCTCCTTGTCTTGGATTTTAGCTTTAACATTCTCAATGGTGTCACTGGGCTCAACCTCG 111319 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| ||||| || ||||| ||||| | |||||| Sbjct 111318 AGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 111275 >seq1269 Length=499009 Score = 84.2 bits (92), Expect = 5e-11 Identities = 153/219 (70%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| | | ||| |||||| ||||||| ||| | ||||| | || | | | | Sbjct 208650 AAGTCTCAACATAAGATGAAGAATGGACTCCTTT-GAATGTTGTGGTCAGGCAAAATACA 208592 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 |||||||||||| |||| || || ||||| || | || || ||| |||||| || ||| Sbjct 208591 TCCATCTTCCAGTTGCTCACCAGCAAAGATCAGTC--TGCTGATCATGAGGAATTCATTC 208534 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 | |||||||||| || || ||||| | || | ||| || ||||| |||| | Sbjct 208533 ATCAACCTGGATCTTGGTCTTTACCTTTTCCAGTGTAT-TGAGGGTTAAACCTTGAGAAT 208475 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| || | || | ||| |||| | |||||| Sbjct 208474 GATGGTCTTCTCCAT-AGGATTTTTGCAAAAATCTGCAT 208437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158363422736405