Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3012 156 6e-33 seq1685 132 7e-26 seq373 107 3e-18 seq98 107 3e-18 >seq3012 Length=223438 Score = 156 bits (172), Expect = 6e-33 Identities = 398/592 (67%), Gaps = 24/592 (4%) Strand=Plus/Plus Query 46617 TTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTT 46676 |||||| |||| || ||||| ||||| || | ||| || |||| | | |||||| || Sbjct 75855 TTTAAATATTAGGCAGGCAAAGTCACAGTGTAAACCT-CA-CTCTGCCCAGTAATTCATT 75912 Query 46677 AGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATA-TAGCCGCGAAAG 46735 |||||||||| | ||||||| ||| | || ||||| | ||| |||| | ||||| Sbjct 75913 GGAAAATGTGATCGTAGGCATTGATCCTCATTTCTTGAGGTAGAATGCTAGC-GTGAAAG 75971 Query 46736 ATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGG 46795 ||| | ||| | | || || ||| | || | || | || ||||||||| | | Sbjct 75972 ---CAGCAGAGATTT---CCTCCACTGCCCCAAAGCCTACCACTCATTCTCCGTAAGTTG 76025 Query 46796 CATCATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTT 46855 | || || | || | | |||| |||||||| || ||||||| ||||||||| Sbjct 76026 CTTCTTTGT----CCCCAGTCAGGCCCTGTCAGCCTT---CTCTACACAAAGCATTGTTT 76078 Query 46856 CTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAA 46915 | |||||||| |||| |||| | || | | |||||||| | || || | | | Sbjct 76079 CAATAGCATTGAAGACAAAGGCCTCCTCTTTGCAATCTTTAATGCAAGTGTCAACAAGGA 76138 Query 46916 GACTATACATTTCTGAATGAATGTTTTCAATAGCCATCT-GAAATCCGTAAAAACATCTT 46974 |||| || ||||| |||| | ||| || || | || || |||| || | ||||| || Sbjct 76139 GACTCTATATTTCAGAATATAAGTTGTCCAT-GTCACCTTGAAAGCCACAGAAACACATT 76197 Query 46975 GCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAG--ACAAATTCTCATTCACTATTC 47032 ||||| ||||||||||| | || || |||| | ||| || | |||| | || Sbjct 76198 GCTTCTGTAATCTGTACTTTTGGACGAAAT--TGCAGCACCAGGCTTTCATATCCAGCTC 76255 Query 47033 CATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCA 47092 ||||||| || |||| || |||| | | | ||||| | | || | | ||| Sbjct 76256 CATCACTTGCTGCAACGAAAGCCAGAGCCCGAGATACAAAATCTCTCTCCACAGGCTTCA 76315 Query 47093 GTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACG 47152 | ||||||| | || || || || |||||| || ||||||||||| || || | Sbjct 76316 G-GGCTTCCAGTGCTGAATGTCCTTGGAGTGATCTACCTCCTCAGCTGTCCAAAAGGAAG 76374 Query 47153 CCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAAT 47204 |||| ||||| | | ||| | ||| || ||||||||| || |||||||| Sbjct 76375 CCTCAGCTTTCTGGTCCATCTGCCAAATGCCACGATATTCGAGAGGAAAAAT 76426 >seq1685 Length=395008 Score = 132 bits (146), Expect = 7e-26 Identities = 109/133 (82%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| ||||| |||||||| || || |||||||| ||||| | || Sbjct 383073 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATAAGGTTCAATGGAC 383014 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| ||||||| ||| ||||||||||||||||| ||||| || || | | |||||| Sbjct 383013 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 382954 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 382953 TTTCTTACACCAT 382941 Score = 111 bits (122), Expect = 2e-19 Identities = 124/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| |||||||| ||||| | ||| || || || || || || || || || Sbjct 361305 CTGAACACTTTCTTTGTTTCTTTGTGCAAATTAGAGACAGCAATCCTTGCTGCCAGGATA 361246 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | ||||| |||| || ||| |||| || || |||||||||| | Sbjct 361245 GCATAGTCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTAGT 361186 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | ||||| || || | |||| ||||| || |||||||||| Sbjct 361185 TCCACGGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGG 361140 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | || ||||| ||||| || ||||| || |||||||| || ||| Sbjct 366179 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 366120 Query 77054 TATGTTTCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCAA 77112 |||||||||||| | || || ||||| || || ||||| || |||| || | |||||| Sbjct 366119 TATGTTTCAATAGCAGCATCAATATCTTCACTG-TGAATCCCCACAGATACCCTCATCAA 366061 Query 77113 CATATGCTGAGGTCGTTC 77130 |||||| || |||| ||| Sbjct 366060 CATATGTTGTGGTCTTTC 366043 Score = 89.7 bits (98), Expect = 7e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 75950 GATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAAC 76009 || || | ||| ||||| || | || |||| | | || || || || || || || Sbjct 378227 GAGCCCTCATAGGTTTCATATGGGCCATCCTCCTTGGACAGGTCACAGCTGGCTTCCAAG 378168 Query 76010 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCA 76069 || || |||||||| ||||| || || | |||||| || || || || |||| ||| Sbjct 378167 GCTCCATAATAAATGGTTTCAAAGATTTGCTTATTCAGTAACTGGGCCTCTGGACTCTCA 378108 Query 76070 AAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGT 76129 |||||||| | |||||||| |||||||| || || || || ||||| ||||| || Sbjct 378107 AAAGGATACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATCCCAATGGGG 378048 Query 76130 CTATGTCTCTTATTGGA 76146 | ||| | ||||| || Sbjct 378047 CGATGGCGTTTATTTGA 378031 >seq373 Length=1017533 Score = 107 bits (118), Expect = 3e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| || ||||||||||| || ||||| ||||| || || ||| Sbjct 533868 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 533927 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | || ||||| |||||||| || || ||||| || || || || || Sbjct 533928 AGCCAGAATATGGATGCAAAAGAGCCAGAAAAAAAGATTCCTTCCACTGCGGCAAAGGCT 533987 Query 46774 ACAA 46777 |||| Sbjct 533988 ACAA 533991 >seq98 Length=1799927 Score = 107 bits (118), Expect = 3e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| || || | ||| || ||||| ||||| |||||||| || || | || | Sbjct 807441 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 807500 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| |||||||| || |||||||| || ||||| || ||||||||||| || || | Sbjct 807501 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 807560 Query 46772 CGAC 46775 | || Sbjct 807561 CCAC 807564 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||| ||||||||||| || |||| ||| | ||||||||| ||||| ||||| | Sbjct 815512 TACCTCTTCCGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATATCGGG 815571 Query 47187 ATATTGGATCGGAAAAATAACAAATC 47212 || ||||| ||||| || ||||||| Sbjct 815572 GTACTGGATTGGAAAGATGACAAATC 815597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712461216527040