Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq23030 129 1e-24 seq5432 125 2e-23 seq1544 84.2 5e-11 >seq23030 Length=1446 Score = 129 bits (142), Expect = 1e-24 Identities = 163/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||||| || || ||||| ||||| || ||||||||||| || | | || Sbjct 741 CTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTG 800 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||| || || |||||||||||||| |||||||||||||| | | ||| || Sbjct 801 CGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCC 860 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || || ||||| |||| | | |||| ||| || || || Sbjct 861 TCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGG 920 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || ||||| || || |||||||| |||| ||||||||| Sbjct 921 GTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATTTT 964 Score = 120 bits (132), Expect = 7e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||||| || || ||||| ||||| || ||||||||||| || | | || Sbjct 285 CTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTG 344 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||| || || |||||||||||||| |||||||||||||| | | ||| || Sbjct 345 CGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCC 404 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || || || || || ||||| |||| | | |||| ||| || || || Sbjct 405 TCTTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGG 464 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| || ||||||||||| | |||||| Sbjct 465 GTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 505 Score = 120 bits (132), Expect = 7e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||||| || || ||||| ||||| || ||||||||||| || | | || Sbjct 513 CTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTG 572 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||| || || |||||||||||||| |||||||||||||| | | ||| || Sbjct 573 CGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCC 632 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || || || || || ||||| |||| | | |||| ||| || || || Sbjct 633 TCTTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGG 692 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| || ||||||||||| | |||||| Sbjct 693 GTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 733 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || |||||||| |||||||||||||| | | ||| | |||||| Sbjct 66 AGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 125 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | ||| || ||||| || Sbjct 126 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTATCC 185 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||||| |||| | | |||| ||| || || || || || || Sbjct 186 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 245 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || ||||||||||| | |||||| Sbjct 246 TTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 277 >seq5432 Length=86301 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || |||||||| ||||| ||||||||||| || | | || | |||||| Sbjct 81672 AGGACCAGGTGCAGAGTAGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCC 81613 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || |||||||||||||| |||||||||||||| | | ||| || ||||| || Sbjct 81612 TCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 81553 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||||| |||| | | |||| ||| || || || || || || Sbjct 81552 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 81493 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || ||||||||||| | |||||| Sbjct 81492 TTCCCCGTCAGGGTCTTCACGAAAATCTGCAT 81461 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||||| || || ||||| ||||| || ||||||||||| || | | || Sbjct 81453 CTGAGACGCAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTG 81394 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||| || || |||||||||||||| |||||||||||||| | | ||| || Sbjct 81393 CGCCCATCCTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCC 81334 Query 152004 TCCTT 152008 ||||| Sbjct 81333 TCCTT 81329 >seq1544 Length=425498 Score = 84.2 bits (92), Expect = 5e-11 Identities = 137/196 (70%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 151912 ACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGA 151971 ||||||| ||||| ||||| || | | ||| ||||| ||||| ||| || | | Sbjct 5900 ACTCTTTCTGGATATTGTACTCTGTAAGAGTGAGGCCATCCTCTAGCTGTTTGCCCACAA 5959 Query 151972 AGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAG 152031 | | || | ||||||||| | | ||| || ||||| ||||| |||| ||||||| Sbjct 5960 AAACCAGACACTGCTGGTCGGGCAGGATGCCCTCCTTGTCTTGGGTTTTAGCTTTGACAT 6019 Query 152032 TCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCT 152088 |||| | |||| ||| || ||||||||||| || || || ||| | || |||| Sbjct 6020 TCTCAGTGGTGTC---ACTGGGCTGGACTTCAAGAGTGATGGTCTTCCCCATCAGGGTCT 6076 Query 152089 TCACGAAGACCTGCAT 152104 ||| |||| |||||| Sbjct 6077 CCACAAAGATCTGCAT 6092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153035849580087