Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq193 165 1e-35 seq47 111 2e-19 >seq193 Length=1367531 Score = 165 bits (182), Expect = 1e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||||| | || ||| |||||||||||| || ||||| || ||||| ||||| Sbjct 66163 GTCTGGAACAAGCGTTCATCATCCCATTCTGGATGCTCCTGTTTGAGGACATCACACACT 66104 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||||||||||| ||||| || ||||| |||||||| || ||||| ||||| ||||| Sbjct 66103 CTGTTGTGTTCCCGCAGCCAAATCGTGGCATACATCATCAGGCCAGGCACCAGACCAAAG 66044 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || ||||| | |||| || || || | | || || |||||||| | | Sbjct 66043 ACCTCCTGCCCCACAGCAAACCGCAGGTGCTCAGGAATATGAGGCGGGTAGATCATTTCC 65984 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 ||||| ||||||||| | ||| ||||||| || || | ||| |||| Sbjct 65983 ACCTGAGTGTCTTTGACTGTGGGCGGATACACCTCGCCATTAATGATCT 65935 Score = 141 bits (156), Expect = 1e-28 Identities = 213/303 (70%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342 |||| | ||| || | || ||||| ||||| ||||| | |||| ||||||||||| | Sbjct 67729 GAACACTGAAGGCAGTAAAAGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGAATTG 67670 Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402 || | |||| ||| || || || ||||| || || |||||||| |||||||| Sbjct 67669 AGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTGGGTTTCCAGTAGT 67610 Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462 | || || ||||| || ||| || ||||| | |||||| || ||||| | || | Sbjct 67609 CAGGAGAACAGATAGGATTACCCAAAAGTCCTTTCAAGGAGAATGGTGCCCCAAGTTCTA 67550 Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522 ||| |||| ||||||||||| | || || ||||||||||||| | | | |||| Sbjct 67549 CCATGGTCTCCCCGAAGATGGCATCTGGGCGAGGCTTTTCCACCAGAAGGGCAGGATACA 67490 Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582 |||||| || || | ||| || || || || | || ||||| || ||||| |||| Sbjct 67489 GCTCCATGGCATCAATGTCACCATAGAGTGCTTCTAACTCCGCAGCCATTTCCTTCTCTC 67430 Query 8583 CTG 8585 ||| Sbjct 67429 CTG 67427 Score = 116 bits (128), Expect = 5e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 ||||||||| || ||||| ||||| ||||| || || |||||| ||| ||| | || Sbjct 65046 TCTTACCCCGTGACCCAGGCCTTTGGTGAAAGCTGGACCTCGCTTAGGATCTGTCTTGAA 64987 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| || ||||| || ||| ||||||| |||||||| | || ||||||||||| || Sbjct 64986 AAACTGATGGGTGAAGTGCTGGGCAAAAAATGCAAACATCATATTTGTGCCCTGGGGGTC 64927 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGCTT 9828 || |||| | || | || ||| ||||||||||| | | | ||| || |||| Sbjct 64926 AGGGATGAACTTTCTTCTTAGGAGAAATTTTTCCACAATCTCTTTTGAATCAGGAAGCTC 64867 Query 9829 TGTTTTACCTGGTGAACGAGAA 9850 | | || |||| || ||||| Sbjct 64866 TTTCTTCCCTGAAAAATGAGAA 64845 >seq47 Length=2325097 Score = 111 bits (122), Expect = 2e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 ||||||| || ||| |||| || || || || || || || ||||||||| |||| | Sbjct 319163 TCTTGACAATGTTGAAGCCCATTTCACCACCAAATGTACTCGGTTTCCAGTACTCCGGAG 319222 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 | |||||| || | | |||||| ||||||||||| ||||| || | || | || | Sbjct 319223 AACAGATGGGATTGCCTAGGAGGCCCTTGAGGGAGAAGGGAGCTCCAATTTCTATCATAC 319282 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || ||||||| ||| ||| || ||| || | | | || | ||| | ||||| Sbjct 319283 TCTCCCCAAAGATGGAGTTTGGATGGCACTTCTCGAGAAGCAGCCCAGGGTAGAACTCCA 319342 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 || |||| |||||| || || || | || || || |||||||| |||||| Sbjct 319343 AGGCATCGATGTCTCCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTCTCCT 319398 Score = 87.8 bits (96), Expect = 3e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | |||||| || | |||||||| || ||||| ||| ||| || || Sbjct 326845 TCACCGATGAGGATGAGGCGGGCCGTCTGGAAGAGCTGCTCATCATCCCAGGTGGGGTGC 326904 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||| | |||||||| | |||||| || | ||||||| || || || | | Sbjct 326905 TCAGTCTTCAGCAGGTCGCACACACGGTTGTGCTCGCGTAGCCAGAGCGTAGCATAGAGC 326964 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 ||||||||||| | ||| ||||| |||| || || || |||| Sbjct 326965 ATGAGCCCAGGAAGCAGCCCAAACACCTCCTGGCCCACGGCCA 327007 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 9707 || |||||||| |||| | || |||||| | || || || |||| | ||| | | Sbjct 329537 CTCACCCCATGGCCCAAGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTTTGA 329594 Query 9708 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 9767 | |||||||| ||||| ||||| |||| ||||||||||| | ||||||||| ||||| | Sbjct 329595 AGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTGGTGCCTTGGGGGT 329654 Query 9768 CGGGAGTGAAGGTCCTCC 9785 | || |||| |||||| Sbjct 329655 CAGGTATGAACTTCCTCC 329672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716400999906880