Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq23030 159 8e-34 seq5432 158 3e-33 seq38 122 2e-22 >seq23030 Length=1446 Score = 159 bits (176), Expect = 8e-34 Identities = 169/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || ||||||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 274 CAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 217 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| ||||| || || || ||||| || ||||||| Sbjct 216 ACACCATCGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAGC 157 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | |||||| | ||||| ||| Sbjct 156 AGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACA 97 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || ||||| || || || | || ||| Sbjct 96 TCCAGAAAGAGTCGACCCTGCACCTGGTGCTGCGCCTGAGA 56 Score = 154 bits (170), Expect = 4e-32 Identities = 168/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || ||||||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 502 CAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 445 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| ||||| ||||| || ||||| || ||||||| Sbjct 444 ACACCATCGAGAACGTCAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCCGACCAGC 385 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||||||||| || ||||| || ||||| | || || | || || ||| Sbjct 384 AGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAACA 325 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || || | |||||| Sbjct 324 TCCAGAAGGAGTCCACTCTGCACCTGGTCCTGCGTCTCAGA 284 Score = 154 bits (170), Expect = 4e-32 Identities = 168/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || ||||||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 730 CAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 673 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| ||||| ||||| || ||||| || ||||||| Sbjct 672 ACACCATCGAGAACGTCAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCCGACCAGC 613 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||||||||| || ||||| || ||||| | || || | || || ||| Sbjct 612 AGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAACA 553 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || || | |||||| Sbjct 552 TCCAGAAGGAGTCCACTCTGCACCTGGTCCTGCGTCTCAGA 512 Score = 150 bits (166), Expect = 4e-31 Identities = 176/235 (75%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| | || || ||||| || || || || || || |||||||| |||| Sbjct 969 AGGTCAAAATGC---AGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGG 913 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| ||||||||||||||||||| ||||| |||||||| || || || Sbjct 912 TGGA--GCCCAGCGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCAT 855 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 ||| || |||||||| | || ||||||||||| || ||||| || ||||| | || || Sbjct 854 CCCCCCCGACCAGCAGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCT 795 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 | || || ||| |||| || || || || ||||| || || || | |||||| Sbjct 794 GTCTGACTACAACATCCAGAAGGAGTCCACTCTGCACCTGGTCCTGCGTCTCAGA 740 >seq5432 Length=86301 Score = 158 bits (174), Expect = 3e-33 Identities = 161/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || ||||||||||| || || || || || || |||||||| ||||||| ||| || | Sbjct 81464 CAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTGG--AGCCCAGCG 81521 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| |||||||| || || ||||| || ||||||| Sbjct 81522 ACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGC 81581 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||||||||| || ||||| || ||||| | || || | || || ||| Sbjct 81582 AGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAACA 81641 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| |||||||| || ||||| || || Sbjct 81642 TCCAGAAAGAATCTACTCTGCACCTGGT 81669 >seq38 Length=2414427 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || || || || || ||||| |||||||| ||| || || Sbjct 979940 CAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCCTAGGAT 979999 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || | || ||||| ||||| | |||||||| ||||| || |||||| Sbjct 980000 ACAATAGAAAATATAAAGGCCAAGATCCAGGATACGGAAGGAATTCCTCCTGATCAGCAA 980059 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || | |||||||| || | | || || ||| Sbjct 980060 AGACTGATCTTTGCTGGCAAGCAAATGAAAGATGGACATGCTTTGTCTGACTACAACAAT 980119 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| ||||| || || |||||||| |||||||| Sbjct 980120 CAAAAGGAATCCACTCTTCATCTTGTGTTGAGACT 980154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202912295269818