Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05]
53,097 sequences; 2,395,954,271 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq23030 159 8e-34
seq5432 158 3e-33
seq38 122 2e-22
>seq23030
Length=1446
Score = 159 bits (176), Expect = 8e-34
Identities = 169/221 (76%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| ||||||||||| || || || || || || |||||||| |||||||| || |||
Sbjct 274 CAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 217
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||||||||| ||||| ||||| || || || ||||| || |||||||
Sbjct 216 ACACCATCGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAGC 157
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| || || || ||||| |||||||| | |||||| | ||||| |||
Sbjct 156 AGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACA 97
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| ||||| || || ||||| || || || | || |||
Sbjct 96 TCCAGAAAGAGTCGACCCTGCACCTGGTGCTGCGCCTGAGA 56
Score = 154 bits (170), Expect = 4e-32
Identities = 168/221 (76%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| ||||||||||| || || || || || || |||||||| |||||||| || |||
Sbjct 502 CAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 445
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||||||||| ||||| ||||| ||||| || ||||| || |||||||
Sbjct 444 ACACCATCGAGAACGTCAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCCGACCAGC 385
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||||||||| || ||||| || ||||| | || || | || || |||
Sbjct 384 AGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAACA 325
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| || || || || ||||| || || || | ||||||
Sbjct 324 TCCAGAAGGAGTCCACTCTGCACCTGGTCCTGCGTCTCAGA 284
Score = 154 bits (170), Expect = 4e-32
Identities = 168/221 (76%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| ||||||||||| || || || || || || |||||||| |||||||| || |||
Sbjct 730 CAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 673
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||||||||| ||||| ||||| ||||| || ||||| || |||||||
Sbjct 672 ACACCATCGAGAACGTCAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCCGACCAGC 613
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||||||||| || ||||| || ||||| | || || | || || |||
Sbjct 612 AGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAACA 553
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| || || || || ||||| || || || | ||||||
Sbjct 552 TCCAGAAGGAGTCCACTCTGCACCTGGTCCTGCGTCTCAGA 512
Score = 150 bits (166), Expect = 4e-31
Identities = 176/235 (75%), Gaps = 7/235 (3%)
Strand=Plus/Minus
Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969
|||| ||||||| | || || ||||| || || || || || || |||||||| ||||
Sbjct 969 AGGTCAAAATGC---AGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGG 913
Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027
|||| || ||| ||||||||||||||||||| ||||| |||||||| || || ||
Sbjct 912 TGGA--GCCCAGCGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCAT 855
Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087
||| || |||||||| | || ||||||||||| || ||||| || ||||| | || ||
Sbjct 854 CCCCCCCGACCAGCAGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCT 795
Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
| || || ||| |||| || || || || ||||| || || || | ||||||
Sbjct 794 GTCTGACTACAACATCCAGAAGGAGTCCACTCTGCACCTGGTCCTGCGTCTCAGA 740
>seq5432
Length=86301
Score = 158 bits (174), Expect = 3e-33
Identities = 161/208 (77%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981
|| ||||||||||| || || || || || || |||||||| ||||||| ||| || |
Sbjct 81464 CAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACCCTGGAGGTGG--AGCCCAGCG 81521
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||||||||| ||||| |||||||| || || ||||| || |||||||
Sbjct 81522 ACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGC 81581
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||||||||| || ||||| || ||||| | || || | || || |||
Sbjct 81582 AGAGGCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGGCGCACCCTGTCTGACTACAACA 81641
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| |||||||| || ||||| || ||
Sbjct 81642 TCCAGAAAGAATCTACTCTGCACCTGGT 81669
>seq38
Length=2414427
Score = 122 bits (134), Expect = 2e-22
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||||||||| || || || || || ||||| |||||||| ||| || ||
Sbjct 979940 CAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCCTAGGAT 979999
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || | || ||||| ||||| | |||||||| ||||| || ||||||
Sbjct 980000 ACAATAGAAAATATAAAGGCCAAGATCCAGGATACGGAAGGAATTCCTCCTGATCAGCAA 980059
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|||| ||||| || || || || | |||||||| || | | || || |||
Sbjct 980060 AGACTGATCTTTGCTGGCAAGCAAATGAAAGATGGACATGCTTTGTCTGACTACAACAAT 980119
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
||||| ||||| || || |||||||| ||||||||
Sbjct 980120 CAAAAGGAATCCACTCTTCATCTTGTGTTGAGACT 980154
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1202912295269818
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |