Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq602 302 5e-77 seq418 302 5e-77 seq30 302 5e-77 seq446 100 3e-16 >seq602 Length=1640730 Score = 302 bits (334), Expect = 5e-77 Identities = 579/844 (69%), Gaps = 11/844 (1%) Strand=Plus/Plus Query 16700 AAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTAG-TAG- 16757 || |||||||||||||| || | || || |||||||| || ||||| ||||| || Sbjct 122189 AAGAAGTTAGTTTTGCCTTCCAATGAAATGTTCTCCATAAAGTCAAATGGATTCTCTACT 122248 Query 16758 CTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATAT 16817 ||||||| || || | ||||| || || | ||| ||||| || ||||| | | Sbjct 122249 CTGAAAACTTTGCTGA--AGCCCAGCTCCAGTATAAGTCTGTCCGCCACGAATTCAGTGT 122306 Query 16818 ATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAA 16877 | || |||||| ||| ||||| || || ||| || || | || || || | | Sbjct 122307 ACTGCTTCATTAAAGTGCAATTCATCCCGATGAGATTTATTGGCAAGGCCTCTGTAAGGA 122366 Query 16878 ATCGTTGCTCTATAACAACCGC-TTCCTTAATAATACTAGCAACTCGTTCCTCGGACGGT 16936 | || ||||| || || || | || | || | ||| | ||| || ||| Sbjct 122367 ACTCCTGTTCTATCCTGACAGCATTGACGATTATTTCTCTGA-CTCTCTGCTCCGAAGGT 122425 Query 16937 GTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTG 16996 ||||| |||||||| ||||| | ||| || ||||| ||||| | |||||| |||||| Sbjct 122426 TTATGTAGCAGATGTTTGAACATTA-ACACGCAAAATCACAATGGAGTCCCTCATCTCTG 122484 Query 16997 CTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAAT 17056 || || ||| | || |||||||| | || |||||| |||||||||||| | ||| ||| Sbjct 122485 CTAATTAGTGCATTCGAAAATGTAAGACCAGGCATCAATCCTCGTTTCTTGAGCCAGAAT 122544 Query 17057 ATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGT 17116 || | || || || | ||||||||| || || || || | |||||| || | || | | Sbjct 122545 ATGGATGCAAAAGAACTAGAAAAGAAGATTCCTTCCACTGCTGCAAAGGCTACTACACAT 122604 Query 17117 TCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTT 17176 || | || || || ||||||| | |||||| | | |||| || || || | |||| Sbjct 122605 TCTCCATAGGTGGCTTCTTTGTCCCCAATCCAATGCAAGGCCCAATCTGCCTTCTTCTTT 122664 Query 17177 ATGCAATCCATCGTTTCTATGGCCTTAAATA--ATTTCTCTTTTTCCTGTAGGTCGATTA 17234 | ||| ||| || || || || || || | | ||| || | | | | || | | Sbjct 122665 ACACAAGGCATTGTCTCAATAGCGTTGAAGAGGAATTCCCTCTCTTTGGAATGTTTA--A 122722 Query 17235 TATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAA 17294 | || ||||||||||| || ||||||||||| ||||||||||| |||||||| ||||| | Sbjct 122723 TGTAAGTATCGATGAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGA 122782 Query 17295 ATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGAT 17354 | || || || || | |||||| | || |||||||| | || || | | | | | Sbjct 122783 AGCCATAGAAACAGCAGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTTCACCAAGT 122842 Query 17355 TTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATT 17414 |||| ||||| || || || || || |||||||| || | | ||| || |||||| Sbjct 122843 TTTCATTCACTATTCCATCACTGGCCGCGAAAAAAGCAAGCACATGGGATATAAAATATC 122902 Query 17415 TTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGG 17474 | || || ||| | || | ||||| || | || ||||| | ||||| || || | Sbjct 122903 TCTCCTCAGGTTTCAGGGCCTCCCAGTGCTGGATGTCCTTGGAAAGGTCCACCTCCTCAG 122962 Query 17475 GGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGG 17534 |||||||| ||| | ||||| |||||||| | ||| ||||||| ||||| |||| Sbjct 122963 CTGTCCAAAATGAGGCCTCGGCCTTCTTATACATCTGCCAGATATCATGGTATTTGATGG 123022 Query 17535 GGAA 17538 | || Sbjct 123023 GAAA 123026 >seq418 Length=2079112 Score = 302 bits (334), Expect = 5e-77 Identities = 595/876 (68%), Gaps = 13/876 (1%) Strand=Plus/Plus Query 16667 CCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGAT 16726 ||||| || || || || | || | || || || |||||||||||||| || | || Sbjct 761078 CCCATCCTCTGATACTCCCCTACTCTCTTCTCAAAGAAGTTAGTTTTGCCTTCCAATGAA 761137 Query 16727 ATATTCTCCATGAAATCAAAAGGATTAG-TAG-CTGAAAATATTTTAGAGTACCCCAGTT 16784 || |||||||| || ||||| ||||| || ||||||| || || | ||||| | Sbjct 761138 ATGTTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTGA--AGCCCAGCT 761195 Query 16785 CGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTC 16844 | || | ||| ||||| |||||||| || || || |||||| ||||||||| | Sbjct 761196 CCAGTATAAGTCTGTCCGCCACAAATTCAATGTACTGCTTCATTAAAGTGCAGTTCATCC 761255 Query 16845 CTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCT 16904 | || ||| || || | || || || | || || ||||| || || | Sbjct 761256 CGATGAGATTCACTGGCAAGGCCTCTGTGAGGAACTCCTGTTCTATCCTGACTGCATTGA 761315 Query 16905 TAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGAC 16964 ||| || |||| | ||| | ||| ||||| |||||||| ||||| | || Sbjct 761316 CAATTATTTCTCTGACTCTCTGCTCCAAAGGTTTATGTACCAGATGTTTGAACATTAAAC 761375 Query 16965 ATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACC 17024 | || ||||| ||||| | |||||| |||||||| || || | || |||||||| | | Sbjct 761376 ACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTTATTCGAAAATGTAAGAC 761435 Query 17025 CGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATA 17084 | |||||| |||||||||||| | ||| ||||| | || || || |||||| |||| | Sbjct 761436 CAGGCATCAATCCTCGTTTCTTAAGCCAGAATATGGATGCAAAAGAACCAGAATAGAAGA 761495 Query 17085 TACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAA 17144 | || || || | | ||| || || |||| | || || || ||||||| | || Sbjct 761496 TTCCTTCCACTGCTCTAAAGGCTCCTACATGTTCTCCATAGGTGGCTTCTTTGTCCCCAA 761555 Query 17145 TCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAA 17204 |||| | |||| || || || | ||||| ||| ||| || || || || || | Sbjct 761556 TCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGA 761615 Query 17205 ATA--ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACAT 17262 | | | ||| || | | | || | | || ||||||||||| || |||||||| Sbjct 761616 AGAGGAATTCCCTCTCTT-------TGGAATCTTTAAGTATCGATGAGGAGACTGTACAT 761668 Query 17263 TTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTAT 17322 ||| ||||||||||| |||||||| ||||| || || || || || | |||||| | || Sbjct 761669 TTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCTGGCTTCTGTAAT 761728 Query 17323 TTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGC 17382 |||||||| | || || ||| | | ||||| ||||| ||||| || || || || Sbjct 761729 CTGAACTTCTTGGCTAAACCGCTCCACAAAGTTTTCATTCACTATGCCATCACTGGCCGC 761788 Query 17383 GAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTC 17442 ||| || |||| | ||| || |||||| | || || ||| | || | ||||| Sbjct 761789 GAAGAAAGCCAGCACATGGGATATAAAATATCTCTCCTCAGGTTTCAGGGCCTCCCAGTG 761848 Query 17443 CTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTT 17502 || | || ||||| | ||||| || || | ||||||| |||| | || || || Sbjct 761849 CTGGATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAGTGAAGCCTCGGCTTTCTT 761908 Query 17503 ATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 |||||| | ||||||||||| ||||| ||||| || Sbjct 761909 ATACATCTGCCAAATATCATGGTATTCGATGGGAAA 761944 >seq30 Length=8517879 Score = 302 bits (334), Expect = 5e-77 Identities = 602/882 (68%), Gaps = 11/882 (1%) Strand=Plus/Minus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 |||||||| || || || |||| | | || | || |||||||||||||| || | Sbjct 2591963 ACACCCATCCTCTGATACTCGCCTAGTCTCTTCTTAAAGAAGTTAGTTTTGCCTTCCAAT 2591904 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAG-TAG-CTGAAAATATTTTAGAGTACCCCA 16781 || || |||||||| || ||||| ||||| || ||||||| || || | |||| Sbjct 2591903 GAAATGTTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTGA--AGCCCA 2591846 Query 16782 GTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCA 16841 | || || | ||| || || || ||||| || || || |||||| |||||||| Sbjct 2591845 GCTCCAGTATGAGTCTGTCGGCCACGAATTCAATGTACTGCTTCATTAAAGTGCAGTTCA 2591786 Query 16842 TTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTT 16901 | || || ||| || || | || | || | || || ||||| || || | Sbjct 2591785 TCCCGATGAGATTCACTGGCAAGGCCTTTGTGAGGAACTCCTGTTCTATCCTGACAGCAT 2591726 Query 16902 CCTTAATAATACTAGCA--ACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACAT 16959 ||| ||| | |||| | ||| || ||| ||||| |||||||| ||||| Sbjct 2591725 TGACAATTATATTTCTCTGACTCTCTGCTCCGAAGGTTTATGTAGCAGATGTTTGAACAT 2591666 Query 16960 CAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGT 17019 | ||| || ||||| ||||| | |||||| |||||||| || || || || |||||||| Sbjct 2591665 TAAACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTCATTCGAAAATGT 2591606 Query 17020 CAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAA 17079 | ||||||||| |||||||||||| | ||| ||||| | || || || |||||||| Sbjct 2591605 AAGACCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAA 2591546 Query 17080 GAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTT 17139 ||| || || || || | |||||| || | || | ||| | | || || ||||||| Sbjct 2591545 GAAGATTCCTTCAACTGCTGCAAAGGCTACTACACATTCTCCATGGGTGGCTTCTTTGTC 2591486 Query 17140 ACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC 17199 | |||||| | |||| || || || | ||||| ||| ||| || || || || Sbjct 2591485 CCCAATCCAACACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGC 2591426 Query 17200 CTTAAATA--ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTG 17257 || || | | ||| || | | || | || | | || ||||||||||| || ||| Sbjct 2591425 GTTGAAGAGGAATTCCCTCTCT-TTGGA-ATCTTTAACGTAAGTATCGATGAGGAGACTG 2591368 Query 17258 TACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCC 17317 |||||||| ||||||||||| |||||||| ||||| || || || || || | |||||| Sbjct 2591367 TACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCAGGCTTCT 2591308 Query 17318 GCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTC 17377 | || |||||||| | || || ||| | | ||||| |||| ||||| || || Sbjct 2591307 GTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCACTCACTATGCCATCACTG 2591248 Query 17378 GCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGT-AAGAACGCG 17436 || ||||| || |||| | ||| || |||||| | || || ||| | | | | Sbjct 2591247 GCTGCGAAGAAAGCCAGGACATGGGATATAAAATATCTCTCCTCAGGTTTCAGGGGCCTC 2591188 Query 17437 CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGC 17496 ||||| || | || |||| | ||||| || || | |||||||| ||| | || Sbjct 2591187 CCAGTGCTGGATGTCCCTGGAAAGGTCCACCTCCTCAGCTGTCCAAAATGAGGCCTCGGC 2591128 Query 17497 CTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 ||| |||||||| | ||| ||||||| ||||| ||||| || Sbjct 2591127 CTTCTTATACATCTGCCAGATATCATGGTATTCGATGGGAAA 2591086 >seq446 Length=2046506 Score = 100 bits (110), Expect = 3e-16 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || ||||||||||| || ||||||||||| ||||||||||| |||||||| ||||| Sbjct 489511 ATGTAAGTATCGATGAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGG 489452 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331 || || || || || |||||||| | || |||||||| Sbjct 489451 AAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 489414 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| |||||||| || || || || |||||||| | || |||||| ||||||||||| Sbjct 492610 CCTCATCTCTGCTAATTAGCTCATTTGAAAATGTAAGACCAGGCATCAGTCCTCGTTTCT 492551 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||| | || || || ||||||||||| || || || || | |||||| | Sbjct 492550 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAGG 492491 Query 17106 CGATTAATCGTTC 17118 | | || ||||| Sbjct 492490 CTACTACACGTTC 492478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517508058536040