Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq602 302 5e-77
seq418 302 5e-77
seq30 302 5e-77
seq446 100 3e-16
>seq602
Length=1640730
Score = 302 bits (334), Expect = 5e-77
Identities = 579/844 (69%), Gaps = 11/844 (1%)
Strand=Plus/Plus
Query 16700 AAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTAG-TAG- 16757
|| |||||||||||||| || | || || |||||||| || ||||| ||||| ||
Sbjct 122189 AAGAAGTTAGTTTTGCCTTCCAATGAAATGTTCTCCATAAAGTCAAATGGATTCTCTACT 122248
Query 16758 CTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATAT 16817
||||||| || || | ||||| || || | ||| ||||| || ||||| | |
Sbjct 122249 CTGAAAACTTTGCTGA--AGCCCAGCTCCAGTATAAGTCTGTCCGCCACGAATTCAGTGT 122306
Query 16818 ATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAA 16877
| || |||||| ||| ||||| || || ||| || || | || || || | |
Sbjct 122307 ACTGCTTCATTAAAGTGCAATTCATCCCGATGAGATTTATTGGCAAGGCCTCTGTAAGGA 122366
Query 16878 ATCGTTGCTCTATAACAACCGC-TTCCTTAATAATACTAGCAACTCGTTCCTCGGACGGT 16936
| || ||||| || || || | || | || | ||| | ||| || |||
Sbjct 122367 ACTCCTGTTCTATCCTGACAGCATTGACGATTATTTCTCTGA-CTCTCTGCTCCGAAGGT 122425
Query 16937 GTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTG 16996
||||| |||||||| ||||| | ||| || ||||| ||||| | |||||| ||||||
Sbjct 122426 TTATGTAGCAGATGTTTGAACATTA-ACACGCAAAATCACAATGGAGTCCCTCATCTCTG 122484
Query 16997 CTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAAT 17056
|| || ||| | || |||||||| | || |||||| |||||||||||| | ||| |||
Sbjct 122485 CTAATTAGTGCATTCGAAAATGTAAGACCAGGCATCAATCCTCGTTTCTTGAGCCAGAAT 122544
Query 17057 ATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGT 17116
|| | || || || | ||||||||| || || || || | |||||| || | || | |
Sbjct 122545 ATGGATGCAAAAGAACTAGAAAAGAAGATTCCTTCCACTGCTGCAAAGGCTACTACACAT 122604
Query 17117 TCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTT 17176
|| | || || || ||||||| | |||||| | | |||| || || || | ||||
Sbjct 122605 TCTCCATAGGTGGCTTCTTTGTCCCCAATCCAATGCAAGGCCCAATCTGCCTTCTTCTTT 122664
Query 17177 ATGCAATCCATCGTTTCTATGGCCTTAAATA--ATTTCTCTTTTTCCTGTAGGTCGATTA 17234
| ||| ||| || || || || || || | | ||| || | | | | || | |
Sbjct 122665 ACACAAGGCATTGTCTCAATAGCGTTGAAGAGGAATTCCCTCTCTTTGGAATGTTTA--A 122722
Query 17235 TATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAA 17294
| || ||||||||||| || ||||||||||| ||||||||||| |||||||| ||||| |
Sbjct 122723 TGTAAGTATCGATGAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGA 122782
Query 17295 ATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGAT 17354
| || || || || | |||||| | || |||||||| | || || | | | | |
Sbjct 122783 AGCCATAGAAACAGCAGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTTCACCAAGT 122842
Query 17355 TTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATT 17414
|||| ||||| || || || || || |||||||| || | | ||| || ||||||
Sbjct 122843 TTTCATTCACTATTCCATCACTGGCCGCGAAAAAAGCAAGCACATGGGATATAAAATATC 122902
Query 17415 TTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGG 17474
| || || ||| | || | ||||| || | || ||||| | ||||| || || |
Sbjct 122903 TCTCCTCAGGTTTCAGGGCCTCCCAGTGCTGGATGTCCTTGGAAAGGTCCACCTCCTCAG 122962
Query 17475 GGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGG 17534
|||||||| ||| | ||||| |||||||| | ||| ||||||| ||||| ||||
Sbjct 122963 CTGTCCAAAATGAGGCCTCGGCCTTCTTATACATCTGCCAGATATCATGGTATTTGATGG 123022
Query 17535 GGAA 17538
| ||
Sbjct 123023 GAAA 123026
>seq418
Length=2079112
Score = 302 bits (334), Expect = 5e-77
Identities = 595/876 (68%), Gaps = 13/876 (1%)
Strand=Plus/Plus
Query 16667 CCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGAT 16726
||||| || || || || | || | || || || |||||||||||||| || | ||
Sbjct 761078 CCCATCCTCTGATACTCCCCTACTCTCTTCTCAAAGAAGTTAGTTTTGCCTTCCAATGAA 761137
Query 16727 ATATTCTCCATGAAATCAAAAGGATTAG-TAG-CTGAAAATATTTTAGAGTACCCCAGTT 16784
|| |||||||| || ||||| ||||| || ||||||| || || | ||||| |
Sbjct 761138 ATGTTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTGA--AGCCCAGCT 761195
Query 16785 CGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTC 16844
| || | ||| ||||| |||||||| || || || |||||| ||||||||| |
Sbjct 761196 CCAGTATAAGTCTGTCCGCCACAAATTCAATGTACTGCTTCATTAAAGTGCAGTTCATCC 761255
Query 16845 CTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCT 16904
| || ||| || || | || || || | || || ||||| || || |
Sbjct 761256 CGATGAGATTCACTGGCAAGGCCTCTGTGAGGAACTCCTGTTCTATCCTGACTGCATTGA 761315
Query 16905 TAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGAC 16964
||| || |||| | ||| | ||| ||||| |||||||| ||||| | ||
Sbjct 761316 CAATTATTTCTCTGACTCTCTGCTCCAAAGGTTTATGTACCAGATGTTTGAACATTAAAC 761375
Query 16965 ATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACC 17024
| || ||||| ||||| | |||||| |||||||| || || | || |||||||| | |
Sbjct 761376 ACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTTATTCGAAAATGTAAGAC 761435
Query 17025 CGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATA 17084
| |||||| |||||||||||| | ||| ||||| | || || || |||||| |||| |
Sbjct 761436 CAGGCATCAATCCTCGTTTCTTAAGCCAGAATATGGATGCAAAAGAACCAGAATAGAAGA 761495
Query 17085 TACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAA 17144
| || || || | | ||| || || |||| | || || || ||||||| | ||
Sbjct 761496 TTCCTTCCACTGCTCTAAAGGCTCCTACATGTTCTCCATAGGTGGCTTCTTTGTCCCCAA 761555
Query 17145 TCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAA 17204
|||| | |||| || || || | ||||| ||| ||| || || || || || |
Sbjct 761556 TCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGA 761615
Query 17205 ATA--ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACAT 17262
| | | ||| || | | | || | | || ||||||||||| || ||||||||
Sbjct 761616 AGAGGAATTCCCTCTCTT-------TGGAATCTTTAAGTATCGATGAGGAGACTGTACAT 761668
Query 17263 TTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTAT 17322
||| ||||||||||| |||||||| ||||| || || || || || | |||||| | ||
Sbjct 761669 TTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCTGGCTTCTGTAAT 761728
Query 17323 TTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGC 17382
|||||||| | || || ||| | | ||||| ||||| ||||| || || || ||
Sbjct 761729 CTGAACTTCTTGGCTAAACCGCTCCACAAAGTTTTCATTCACTATGCCATCACTGGCCGC 761788
Query 17383 GAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTC 17442
||| || |||| | ||| || |||||| | || || ||| | || | |||||
Sbjct 761789 GAAGAAAGCCAGCACATGGGATATAAAATATCTCTCCTCAGGTTTCAGGGCCTCCCAGTG 761848
Query 17443 CTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTT 17502
|| | || ||||| | ||||| || || | ||||||| |||| | || || ||
Sbjct 761849 CTGGATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAGTGAAGCCTCGGCTTTCTT 761908
Query 17503 ATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538
|||||| | ||||||||||| ||||| ||||| ||
Sbjct 761909 ATACATCTGCCAAATATCATGGTATTCGATGGGAAA 761944
>seq30
Length=8517879
Score = 302 bits (334), Expect = 5e-77
Identities = 602/882 (68%), Gaps = 11/882 (1%)
Strand=Plus/Minus
Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723
|||||||| || || || |||| | | || | || |||||||||||||| || |
Sbjct 2591963 ACACCCATCCTCTGATACTCGCCTAGTCTCTTCTTAAAGAAGTTAGTTTTGCCTTCCAAT 2591904
Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAG-TAG-CTGAAAATATTTTAGAGTACCCCA 16781
|| || |||||||| || ||||| ||||| || ||||||| || || | ||||
Sbjct 2591903 GAAATGTTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTGA--AGCCCA 2591846
Query 16782 GTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCA 16841
| || || | ||| || || || ||||| || || || |||||| ||||||||
Sbjct 2591845 GCTCCAGTATGAGTCTGTCGGCCACGAATTCAATGTACTGCTTCATTAAAGTGCAGTTCA 2591786
Query 16842 TTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTT 16901
| || || ||| || || | || | || | || || ||||| || || |
Sbjct 2591785 TCCCGATGAGATTCACTGGCAAGGCCTTTGTGAGGAACTCCTGTTCTATCCTGACAGCAT 2591726
Query 16902 CCTTAATAATACTAGCA--ACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACAT 16959
||| ||| | |||| | ||| || ||| ||||| |||||||| |||||
Sbjct 2591725 TGACAATTATATTTCTCTGACTCTCTGCTCCGAAGGTTTATGTAGCAGATGTTTGAACAT 2591666
Query 16960 CAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGT 17019
| ||| || ||||| ||||| | |||||| |||||||| || || || || ||||||||
Sbjct 2591665 TAAACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTCATTCGAAAATGT 2591606
Query 17020 CAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAA 17079
| ||||||||| |||||||||||| | ||| ||||| | || || || ||||||||
Sbjct 2591605 AAGACCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAA 2591546
Query 17080 GAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTT 17139
||| || || || || | |||||| || | || | ||| | | || || |||||||
Sbjct 2591545 GAAGATTCCTTCAACTGCTGCAAAGGCTACTACACATTCTCCATGGGTGGCTTCTTTGTC 2591486
Query 17140 ACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC 17199
| |||||| | |||| || || || | ||||| ||| ||| || || || ||
Sbjct 2591485 CCCAATCCAACACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGC 2591426
Query 17200 CTTAAATA--ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTG 17257
|| || | | ||| || | | || | || | | || ||||||||||| || |||
Sbjct 2591425 GTTGAAGAGGAATTCCCTCTCT-TTGGA-ATCTTTAACGTAAGTATCGATGAGGAGACTG 2591368
Query 17258 TACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCC 17317
|||||||| ||||||||||| |||||||| ||||| || || || || || | ||||||
Sbjct 2591367 TACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCAGGCTTCT 2591308
Query 17318 GCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTC 17377
| || |||||||| | || || ||| | | ||||| |||| ||||| || ||
Sbjct 2591307 GTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCACTCACTATGCCATCACTG 2591248
Query 17378 GCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGT-AAGAACGCG 17436
|| ||||| || |||| | ||| || |||||| | || || ||| | | | |
Sbjct 2591247 GCTGCGAAGAAAGCCAGGACATGGGATATAAAATATCTCTCCTCAGGTTTCAGGGGCCTC 2591188
Query 17437 CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGC 17496
||||| || | || |||| | ||||| || || | |||||||| ||| | ||
Sbjct 2591187 CCAGTGCTGGATGTCCCTGGAAAGGTCCACCTCCTCAGCTGTCCAAAATGAGGCCTCGGC 2591128
Query 17497 CTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538
||| |||||||| | ||| ||||||| ||||| ||||| ||
Sbjct 2591127 CTTCTTATACATCTGCCAGATATCATGGTATTCGATGGGAAA 2591086
>seq446
Length=2046506
Score = 100 bits (110), Expect = 3e-16
Identities = 81/98 (83%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293
|| || ||||||||||| || ||||||||||| ||||||||||| |||||||| |||||
Sbjct 489511 ATGTAAGTATCGATGAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGG 489452
Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331
|| || || || || |||||||| | || ||||||||
Sbjct 489451 AAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 489414
Score = 96.9 bits (106), Expect = 4e-15
Identities = 101/133 (76%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045
|||| |||||||| || || || || |||||||| | || |||||| |||||||||||
Sbjct 492610 CCTCATCTCTGCTAATTAGCTCATTTGAAAATGTAAGACCAGGCATCAGTCCTCGTTTCT 492551
Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105
| | ||| ||||| | || || || ||||||||||| || || || || | |||||| |
Sbjct 492550 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAGG 492491
Query 17106 CGATTAATCGTTC 17118
| | || |||||
Sbjct 492490 CTACTACACGTTC 492478
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517508058536040
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