Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq602 295 7e-75 seq30 289 3e-73 seq418 282 4e-71 seq446 87.8 2e-12 seq92 87.8 2e-12 >seq602 Length=1640730 Score = 295 bits (326), Expect = 7e-75 Identities = 586/854 (69%), Gaps = 19/854 (2%) Strand=Plus/Plus Query 15938 AAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTAG-TAG- 15995 |||||||||||||| || || || || || || |||||||| ||||| ||||| || Sbjct 122189 AAGAAGTTAGTTTTGCCTTCCAATGAAATGTTCTCCATAAAGTCAAATGGATTCTCTACT 122248 Query 15996 CTGAAAATATCTTAGA-GTACCCCAGTTCC-GTAACTAA-TCTATCTGCTACAAATTCTA 16052 ||||||| ||| | | | ||||| ||| ||| ||| ||| || || || ||||| Sbjct 122249 CTGAAAA---CTTTGCTGAAGCCCAGCTCCAGTA--TAAGTCTGTCCGCCACGAATTCAG 122303 Query 16053 TATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTA 16112 | || || |||||| |||||| || || || || || || | || | ||| | Sbjct 122304 TGTACTGCTTCATTAAAGTGCAATTCATCCCGATGAGATTTATTGGCAAGGCCTCTGTAA 122363 Query 16113 AAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACG 16172 || | ||||||||| || || | || || || || ||| || || | Sbjct 122364 GGAACTCCTGTTCTATCCTGACAGCATTGACGATTATTTCTCTGACTCTCTGCTCCGAAG 122423 Query 16173 GTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTC 16232 || |||| || ||||| ||||||| |||||| || || ||||| ||||| || |||| Sbjct 122424 GTTTATGTAGCAGATGTTTGAACATTA-ACACGCAAAATCACAATGGAGTCCCTCATCTC 122482 Query 16233 TGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGA 16292 |||| || ||| | || ||||| || | || ||||| |||||||||||| | ||||| Sbjct 122483 TGCTAATTAGTGCATTCGAAAATGTAAGACCAGGCATCAATCCTCGTTTCTTGAGCCAGA 122542 Query 16293 ATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATC 16352 |||| | ||||| || | |||||||| || || || || | |||||| || | || | Sbjct 122543 ATATGGATGCAAAAGAACTAGAAAAGAAGATTCCTTCCACTGCTGCAAAGGCTACTACAC 122602 Query 16353 GTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTT 16412 ||| | || || || ||||| | | |||||| | | |||| || || || | | Sbjct 122603 ATTCTCCATAGGTGGCTTCTTTGTCCCCAATCCAATGCAAGGCCCAATCTGCCTTCTTCT 122662 Query 16413 TTATACAATCCATCGTTTCTATGGCCTTAAACA--ATTTCTCTTTTTCCTGAATATCGAT 16470 ||| |||| ||| || || || || || || | | ||| || | | |||| | | Sbjct 122663 TTACACAAGGCATTGTCTCAATAGCGTTGAAGAGGAATTCCCTCTCTTTGGAATGT--TT 122720 Query 16471 TATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTG 16530 || || ||||| || || | |||||||||||| ||||||||||| || ||||| ||||| Sbjct 122721 AATGTAAGTATCGATGAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTG 122780 Query 16531 AAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAG 16590 || |||||||| || | || || | || || ||||| | ||| || | | ||| Sbjct 122781 GAAGCCATAGAAACAGCAGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTTCACCAA 122840 Query 16591 GTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCA--ATATGTGCTTAATGAAA 16648 ||| |||||||| || || ||||| || || ||||| || | | ||| | | || ||| Sbjct 122841 GTTTTCATTCACTATTCCATCACTGGCCGCGAAAAAAGCAAGCACATGGGAT--ATAAAA 122898 Query 16649 TATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCT 16708 ||| | || |||| | | || | ||| | | | || ||||| | ||||| || Sbjct 122899 TATCTCTCCTCAGGTTTCAGGGCCTCCCAGTGCTGGATGTCCTTGGAAAGGTCCACCTCC 122958 Query 16709 TCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGT 16768 || | |||||||| ||| | ||||| |||||||| | ||| ||||||| ||||| Sbjct 122959 TCAGCTGTCCAAAATGAGGCCTCGGCCTTCTTATACATCTGCCAGATATCATGGTATTTG 123018 Query 16769 ATGGGAAATACGAC 16782 |||||||| | ||| Sbjct 123019 ATGGGAAAGATGAC 123032 >seq30 Length=8517879 Score = 289 bits (320), Expect = 3e-73 Identities = 604/890 (68%), Gaps = 15/890 (2%) Strand=Plus/Minus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 |||||||| || || || || | | | || | |||||||||||||| || || || Sbjct 2591963 ACACCCATCCTCTGATACTCGCCTAGTCTCTTCTTAAAGAAGTTAGTTTTGCCTTCCAAT 2591904 Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAG-TAG-CTGAAAATATCTTAGAGTACCCCA 16019 || || || |||||||| ||||| ||||| || ||||||| ||| | | |||| Sbjct 2591903 GAAATGTTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAAC--CTTGCTGAAGCCCA 2591846 Query 16020 GTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAA 16079 | ||| | | ||| || || || ||||| || || || |||||| ||| || | Sbjct 2591845 GCTCCAGTATGAGTCTGTCGGCCACGAATTCAATGTACTGCTTCATTAAAGTGCAGTTCA 2591786 Query 16080 TTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTT 16139 | || || || || || | || ||||| | || | ||||||||| || || | Sbjct 2591785 TCCCGATGAGATTCACTGGCAAGGCCTTTGTGAGGAACTCCTGTTCTATCCTGACAGCAT 2591726 Query 16140 CTTTAATGATAT--CGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACAT 16197 ||| |||| | || ||| || || ||| |||| || ||||| ||||| Sbjct 2591725 TGACAATTATATTTCTCTGACTCTCTGCTCCGAAGGTTTATGTAGCAGATGTTTGAACAT 2591666 Query 16198 TAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGT 16257 || |||||| || || ||||| ||||| || |||||||| || || || || ||||| || Sbjct 2591665 TAAACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTCATTCGAAAATGT 2591606 Query 16258 TAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAA 16317 | || ||||| |||||||||||| | ||||||||| | ||||| || || ||||| Sbjct 2591605 AAGACCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAA 2591546 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATT 16377 ||| || || ||||| | |||||| || | || | ||| | | || || ||||| | Sbjct 2591545 GAAGATTCCTTCAACTGCTGCAAAGGCTACTACACATTCTCCATGGGTGGCTTCTTTGTC 2591486 Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437 | |||||| | |||| || || || | |||| |||| ||| || || || || Sbjct 2591485 CCCAATCCAACACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGC 2591426 Query 16438 CTTAAACA--ATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTG 16495 || || | | ||| || | | || ||| | | || ||||| || || | |||| Sbjct 2591425 GTTGAAGAGGAATTCCCTCTCTTTGGA--ATCTTTAACGTAAGTATCGATGAGGAGACTG 2591368 Query 16496 TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCC 16555 |||||||| ||||||||||| || ||||| ||||| || |||||||| || | || || Sbjct 2591367 TACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCAGGCTTCT 2591308 Query 16556 GCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTT 16615 | || || ||||| | ||| || ||| ||| ||| ||| |||| || || ||||| Sbjct 2591307 GTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCACTCACTATGCCATCACTG 2591248 Query 16616 GCAGCAAAAAACGCCA--ATATGTGCTTAATGAAATATTTTTCGTCAGATGT-AAGAATA 16672 || || || || |||| | ||| | | || |||||| | || |||| | | | | Sbjct 2591247 GCTGCGAAGAAAGCCAGGACATGGGAT--ATAAAATATCTCTCCTCAGGTTTCAGGGGCC 2591190 Query 16673 TGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACT 16732 | ||| | | | || |||| | ||||| || || | |||||||| ||| | Sbjct 2591189 TCCCAGTGCTGGATGTCCCTGGAAAGGTCCACCTCCTCAGCTGTCCAAAATGAGGCCTCG 2591130 Query 16733 GCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 ||||| |||||||| | ||| ||||||| ||||| |||||||| | ||| Sbjct 2591129 GCCTTCTTATACATCTGCCAGATATCATGGTATTCGATGGGAAAGATGAC 2591080 >seq418 Length=2079112 Score = 282 bits (312), Expect = 4e-71 Identities = 602/887 (68%), Gaps = 23/887 (3%) Strand=Plus/Plus Query 15905 CCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGAT 15964 ||||| || || || || | || | || || |||||||||||||| || || || || Sbjct 761078 CCCATCCTCTGATACTCCCCTACTCTCTTCTCAAAGAAGTTAGTTTTGCCTTCCAATGAA 761137 Query 15965 ATATTTTCCATAAAATCAAAGGGATTAG-TAG-CTGAAAATATCTTAGAGTACCCCAGTT 16022 || || |||||||| ||||| ||||| || ||||||| ||| | | ||||| | Sbjct 761138 ATGTTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAAC--CTTGCTGAAGCCCAGCT 761195 Query 16023 CC-GTAACTAA-TCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAAT 16080 || ||| ||| ||| || || |||||||| || || || |||||| ||| || || Sbjct 761196 CCAGTA--TAAGTCTGTCCGCCACAAATTCAATGTACTGCTTCATTAAAGTGCAGTTCAT 761253 Query 16081 TCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTC 16140 || || || || || | || | ||| | || | ||||||||| || || | Sbjct 761254 CCCGATGAGATTCACTGGCAAGGCCTCTGTGAGGAACTCCTGTTCTATCCTGACTGCATT 761313 Query 16141 TTTAATGATATCGGTGGCTCG-TGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTA 16199 ||| || || || ||| || | || | ||| |||| || ||||| ||||||| Sbjct 761314 GACAATTATTTCTCTGACTCTCTGCTCCAAA-GGTTTATGTACCAGATGTTTGAACATTA 761372 Query 16200 GACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTA 16259 |||||| || || ||||| ||||| || |||||||| || || | || ||||| || | Sbjct 761373 AACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTTATTCGAAAATGTAA 761432 Query 16260 ACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGA 16319 || ||||| |||||||||||| | ||||||||| | ||||| || || ||| ||| Sbjct 761433 GACCAGGCATCAATCCTCGTTTCTTAAGCCAGAATATGGATGCAAAAGAACCAGAATAGA 761492 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTAC 16379 | || || || || | | ||| || || |||| | || || || ||||| | | Sbjct 761493 AGATTCCTTCCACTGCTCTAAAGGCTCCTACATGTTCTCCATAGGTGGCTTCTTTGTCCC 761552 Query 16380 GAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCT 16439 |||||| | |||| || || || | |||| |||| ||| || || || || | Sbjct 761553 CAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGT 761612 Query 16440 TAAACA--ATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTA 16497 | || | | ||| ||| | | || | | || ||||| || || | |||||| Sbjct 761613 TGAAGAGGAATTC-------CCTCTCTTTGGAATCTTTAAGTATCGATGAGGAGACTGTA 761665 Query 16498 CATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGC 16557 |||||| ||||||||||| || ||||| ||||| || |||||||| || | || || | Sbjct 761666 CATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCTGGCTTCTGT 761725 Query 16558 TATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGC 16617 || || ||||| | ||| || ||| | | ||| |||||||| || || ||||| || Sbjct 761726 AATCTGAACTTCTTGGCTAAACCGCTCCACAAAGTTTTCATTCACTATGCCATCACTGGC 761785 Query 16618 AGCAAAAAACGCCA--ATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGC 16675 || || || |||| | ||| | | || |||||| | || |||| | | || | | Sbjct 761786 CGCGAAGAAAGCCAGCACATGGGAT--ATAAAATATCTCTCCTCAGGTTTCAGGGCCTCC 761843 Query 16676 CAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCC 16735 || | | | || ||||| | ||||| || || | ||||||| |||| | || Sbjct 761844 CAGTGCTGGATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAGTGAAGCCTCGGCT 761903 Query 16736 TTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 || |||||||| | ||||||||||| ||||| |||||||| | ||| Sbjct 761904 TTCTTATACATCTGCCAAATATCATGGTATTCGATGGGAAAGATGAC 761950 >seq446 Length=2046506 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| || || || || ||||| || | || ||||| |||||||||||| Sbjct 492608 TCATCTCTGCTAATTAGCTCATTTGAAAATGTAAGACCAGGCATCAGTCCTCGTTTCTTG 492549 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345 | ||||||||| | ||||| || || |||||||| || || || || | |||||| || Sbjct 492548 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAGGCT 492489 Query 16346 ATTAATCGTTC 16356 | || ||||| Sbjct 492488 ACTACACGTTC 492478 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || || ||||| || || | |||||||||||| ||||||||||| || ||||| ||||| Sbjct 489511 ATGTAAGTATCGATGAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGG 489452 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC 16569 || |||||||| || || || || | || || ||||| Sbjct 489451 AAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 489414 >seq92 Length=5367877 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| || || ||||||||||| | || ||||| |||| ||| | Sbjct 3850916 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTTTTTT 3850857 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAG 16334 ||| ||| ||||| ||||| || || || |||||||| || || || |||| Sbjct 3850856 TTAGCCAAAATATAGCAGCGAAAGATCCTGAAAAGAAAATTCCTTCTACAG 3850806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511377303277960