Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq602 295 7e-75
seq30 289 3e-73
seq418 282 4e-71
seq446 87.8 2e-12
seq92 87.8 2e-12
>seq602
Length=1640730
Score = 295 bits (326), Expect = 7e-75
Identities = 586/854 (69%), Gaps = 19/854 (2%)
Strand=Plus/Plus
Query 15938 AAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTAG-TAG- 15995
|||||||||||||| || || || || || || |||||||| ||||| ||||| ||
Sbjct 122189 AAGAAGTTAGTTTTGCCTTCCAATGAAATGTTCTCCATAAAGTCAAATGGATTCTCTACT 122248
Query 15996 CTGAAAATATCTTAGA-GTACCCCAGTTCC-GTAACTAA-TCTATCTGCTACAAATTCTA 16052
||||||| ||| | | | ||||| ||| ||| ||| ||| || || || |||||
Sbjct 122249 CTGAAAA---CTTTGCTGAAGCCCAGCTCCAGTA--TAAGTCTGTCCGCCACGAATTCAG 122303
Query 16053 TATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTA 16112
| || || |||||| |||||| || || || || || || | || | ||| |
Sbjct 122304 TGTACTGCTTCATTAAAGTGCAATTCATCCCGATGAGATTTATTGGCAAGGCCTCTGTAA 122363
Query 16113 AAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACG 16172
|| | ||||||||| || || | || || || || ||| || || |
Sbjct 122364 GGAACTCCTGTTCTATCCTGACAGCATTGACGATTATTTCTCTGACTCTCTGCTCCGAAG 122423
Query 16173 GTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTC 16232
|| |||| || ||||| ||||||| |||||| || || ||||| ||||| || ||||
Sbjct 122424 GTTTATGTAGCAGATGTTTGAACATTA-ACACGCAAAATCACAATGGAGTCCCTCATCTC 122482
Query 16233 TGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGA 16292
|||| || ||| | || ||||| || | || ||||| |||||||||||| | |||||
Sbjct 122483 TGCTAATTAGTGCATTCGAAAATGTAAGACCAGGCATCAATCCTCGTTTCTTGAGCCAGA 122542
Query 16293 ATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATC 16352
|||| | ||||| || | |||||||| || || || || | |||||| || | || |
Sbjct 122543 ATATGGATGCAAAAGAACTAGAAAAGAAGATTCCTTCCACTGCTGCAAAGGCTACTACAC 122602
Query 16353 GTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTT 16412
||| | || || || ||||| | | |||||| | | |||| || || || | |
Sbjct 122603 ATTCTCCATAGGTGGCTTCTTTGTCCCCAATCCAATGCAAGGCCCAATCTGCCTTCTTCT 122662
Query 16413 TTATACAATCCATCGTTTCTATGGCCTTAAACA--ATTTCTCTTTTTCCTGAATATCGAT 16470
||| |||| ||| || || || || || || | | ||| || | | |||| | |
Sbjct 122663 TTACACAAGGCATTGTCTCAATAGCGTTGAAGAGGAATTCCCTCTCTTTGGAATGT--TT 122720
Query 16471 TATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTG 16530
|| || ||||| || || | |||||||||||| ||||||||||| || ||||| |||||
Sbjct 122721 AATGTAAGTATCGATGAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTG 122780
Query 16531 AAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAG 16590
|| |||||||| || | || || | || || ||||| | ||| || | | |||
Sbjct 122781 GAAGCCATAGAAACAGCAGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTTCACCAA 122840
Query 16591 GTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCA--ATATGTGCTTAATGAAA 16648
||| |||||||| || || ||||| || || ||||| || | | ||| | | || |||
Sbjct 122841 GTTTTCATTCACTATTCCATCACTGGCCGCGAAAAAAGCAAGCACATGGGAT--ATAAAA 122898
Query 16649 TATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCT 16708
||| | || |||| | | || | ||| | | | || ||||| | ||||| ||
Sbjct 122899 TATCTCTCCTCAGGTTTCAGGGCCTCCCAGTGCTGGATGTCCTTGGAAAGGTCCACCTCC 122958
Query 16709 TCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGT 16768
|| | |||||||| ||| | ||||| |||||||| | ||| ||||||| |||||
Sbjct 122959 TCAGCTGTCCAAAATGAGGCCTCGGCCTTCTTATACATCTGCCAGATATCATGGTATTTG 123018
Query 16769 ATGGGAAATACGAC 16782
|||||||| | |||
Sbjct 123019 ATGGGAAAGATGAC 123032
>seq30
Length=8517879
Score = 289 bits (320), Expect = 3e-73
Identities = 604/890 (68%), Gaps = 15/890 (2%)
Strand=Plus/Minus
Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961
|||||||| || || || || | | | || | |||||||||||||| || || ||
Sbjct 2591963 ACACCCATCCTCTGATACTCGCCTAGTCTCTTCTTAAAGAAGTTAGTTTTGCCTTCCAAT 2591904
Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAG-TAG-CTGAAAATATCTTAGAGTACCCCA 16019
|| || || |||||||| ||||| ||||| || ||||||| ||| | | ||||
Sbjct 2591903 GAAATGTTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAAC--CTTGCTGAAGCCCA 2591846
Query 16020 GTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAA 16079
| ||| | | ||| || || || ||||| || || || |||||| ||| || |
Sbjct 2591845 GCTCCAGTATGAGTCTGTCGGCCACGAATTCAATGTACTGCTTCATTAAAGTGCAGTTCA 2591786
Query 16080 TTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTT 16139
| || || || || || | || ||||| | || | ||||||||| || || |
Sbjct 2591785 TCCCGATGAGATTCACTGGCAAGGCCTTTGTGAGGAACTCCTGTTCTATCCTGACAGCAT 2591726
Query 16140 CTTTAATGATAT--CGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACAT 16197
||| |||| | || ||| || || ||| |||| || ||||| |||||
Sbjct 2591725 TGACAATTATATTTCTCTGACTCTCTGCTCCGAAGGTTTATGTAGCAGATGTTTGAACAT 2591666
Query 16198 TAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGT 16257
|| |||||| || || ||||| ||||| || |||||||| || || || || ||||| ||
Sbjct 2591665 TAAACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTCATTCGAAAATGT 2591606
Query 16258 TAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAA 16317
| || ||||| |||||||||||| | ||||||||| | ||||| || || |||||
Sbjct 2591605 AAGACCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAA 2591546
Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATT 16377
||| || || ||||| | |||||| || | || | ||| | | || || ||||| |
Sbjct 2591545 GAAGATTCCTTCAACTGCTGCAAAGGCTACTACACATTCTCCATGGGTGGCTTCTTTGTC 2591486
Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437
| |||||| | |||| || || || | |||| |||| ||| || || || ||
Sbjct 2591485 CCCAATCCAACACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGC 2591426
Query 16438 CTTAAACA--ATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTG 16495
|| || | | ||| || | | || ||| | | || ||||| || || | ||||
Sbjct 2591425 GTTGAAGAGGAATTCCCTCTCTTTGGA--ATCTTTAACGTAAGTATCGATGAGGAGACTG 2591368
Query 16496 TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCC 16555
|||||||| ||||||||||| || ||||| ||||| || |||||||| || | || ||
Sbjct 2591367 TACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCAGGCTTCT 2591308
Query 16556 GCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTT 16615
| || || ||||| | ||| || ||| ||| ||| ||| |||| || || |||||
Sbjct 2591307 GTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCACTCACTATGCCATCACTG 2591248
Query 16616 GCAGCAAAAAACGCCA--ATATGTGCTTAATGAAATATTTTTCGTCAGATGT-AAGAATA 16672
|| || || || |||| | ||| | | || |||||| | || |||| | | | |
Sbjct 2591247 GCTGCGAAGAAAGCCAGGACATGGGAT--ATAAAATATCTCTCCTCAGGTTTCAGGGGCC 2591190
Query 16673 TGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACT 16732
| ||| | | | || |||| | ||||| || || | |||||||| ||| |
Sbjct 2591189 TCCCAGTGCTGGATGTCCCTGGAAAGGTCCACCTCCTCAGCTGTCCAAAATGAGGCCTCG 2591130
Query 16733 GCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782
||||| |||||||| | ||| ||||||| ||||| |||||||| | |||
Sbjct 2591129 GCCTTCTTATACATCTGCCAGATATCATGGTATTCGATGGGAAAGATGAC 2591080
>seq418
Length=2079112
Score = 282 bits (312), Expect = 4e-71
Identities = 602/887 (68%), Gaps = 23/887 (3%)
Strand=Plus/Plus
Query 15905 CCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGAT 15964
||||| || || || || | || | || || |||||||||||||| || || || ||
Sbjct 761078 CCCATCCTCTGATACTCCCCTACTCTCTTCTCAAAGAAGTTAGTTTTGCCTTCCAATGAA 761137
Query 15965 ATATTTTCCATAAAATCAAAGGGATTAG-TAG-CTGAAAATATCTTAGAGTACCCCAGTT 16022
|| || |||||||| ||||| ||||| || ||||||| ||| | | ||||| |
Sbjct 761138 ATGTTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAAC--CTTGCTGAAGCCCAGCT 761195
Query 16023 CC-GTAACTAA-TCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAAT 16080
|| ||| ||| ||| || || |||||||| || || || |||||| ||| || ||
Sbjct 761196 CCAGTA--TAAGTCTGTCCGCCACAAATTCAATGTACTGCTTCATTAAAGTGCAGTTCAT 761253
Query 16081 TCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTC 16140
|| || || || || | || | ||| | || | ||||||||| || || |
Sbjct 761254 CCCGATGAGATTCACTGGCAAGGCCTCTGTGAGGAACTCCTGTTCTATCCTGACTGCATT 761313
Query 16141 TTTAATGATATCGGTGGCTCG-TGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTA 16199
||| || || || ||| || | || | ||| |||| || ||||| |||||||
Sbjct 761314 GACAATTATTTCTCTGACTCTCTGCTCCAAA-GGTTTATGTACCAGATGTTTGAACATTA 761372
Query 16200 GACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTA 16259
|||||| || || ||||| ||||| || |||||||| || || | || ||||| || |
Sbjct 761373 AACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTTATTCGAAAATGTAA 761432
Query 16260 ACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGA 16319
|| ||||| |||||||||||| | ||||||||| | ||||| || || ||| |||
Sbjct 761433 GACCAGGCATCAATCCTCGTTTCTTAAGCCAGAATATGGATGCAAAAGAACCAGAATAGA 761492
Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTAC 16379
| || || || || | | ||| || || |||| | || || || ||||| | |
Sbjct 761493 AGATTCCTTCCACTGCTCTAAAGGCTCCTACATGTTCTCCATAGGTGGCTTCTTTGTCCC 761552
Query 16380 GAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCT 16439
|||||| | |||| || || || | |||| |||| ||| || || || || |
Sbjct 761553 CAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGT 761612
Query 16440 TAAACA--ATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTA 16497
| || | | ||| ||| | | || | | || ||||| || || | ||||||
Sbjct 761613 TGAAGAGGAATTC-------CCTCTCTTTGGAATCTTTAAGTATCGATGAGGAGACTGTA 761665
Query 16498 CATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGC 16557
|||||| ||||||||||| || ||||| ||||| || |||||||| || | || || |
Sbjct 761666 CATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCTGGCTTCTGT 761725
Query 16558 TATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGC 16617
|| || ||||| | ||| || ||| | | ||| |||||||| || || ||||| ||
Sbjct 761726 AATCTGAACTTCTTGGCTAAACCGCTCCACAAAGTTTTCATTCACTATGCCATCACTGGC 761785
Query 16618 AGCAAAAAACGCCA--ATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGC 16675
|| || || |||| | ||| | | || |||||| | || |||| | | || | |
Sbjct 761786 CGCGAAGAAAGCCAGCACATGGGAT--ATAAAATATCTCTCCTCAGGTTTCAGGGCCTCC 761843
Query 16676 CAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCC 16735
|| | | | || ||||| | ||||| || || | ||||||| |||| | ||
Sbjct 761844 CAGTGCTGGATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAGTGAAGCCTCGGCT 761903
Query 16736 TTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782
|| |||||||| | ||||||||||| ||||| |||||||| | |||
Sbjct 761904 TTCTTATACATCTGCCAAATATCATGGTATTCGATGGGAAAGATGAC 761950
>seq446
Length=2046506
Score = 87.8 bits (96), Expect = 2e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285
|| |||||||| || || || || ||||| || | || ||||| ||||||||||||
Sbjct 492608 TCATCTCTGCTAATTAGCTCATTTGAAAATGTAAGACCAGGCATCAGTCCTCGTTTCTTG 492549
Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345
| ||||||||| | ||||| || || |||||||| || || || || | |||||| ||
Sbjct 492548 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAGGCT 492489
Query 16346 ATTAATCGTTC 16356
| || |||||
Sbjct 492488 ACTACACGTTC 492478
Score = 82.4 bits (90), Expect = 8e-11
Identities = 77/98 (79%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531
|| || ||||| || || | |||||||||||| ||||||||||| || ||||| |||||
Sbjct 489511 ATGTAAGTATCGATGAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGG 489452
Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC 16569
|| |||||||| || || || || | || || |||||
Sbjct 489451 AAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 489414
>seq92
Length=5367877
Score = 87.8 bits (96), Expect = 2e-12
Identities = 86/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283
|||| ||||||||||| || || ||||||||||| | || ||||| |||| ||| |
Sbjct 3850916 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTTTTTT 3850857
Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAG 16334
||| ||| ||||| ||||| || || || |||||||| || || || ||||
Sbjct 3850856 TTAGCCAAAATATAGCAGCGAAAGATCCTGAAAAGAAAATTCCTTCTACAG 3850806
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511377303277960
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