Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq103 181 8e-41
seq7 120 2e-22
>seq103
Length=4964831
Score = 181 bits (200), Expect = 8e-41
Identities = 287/414 (69%), Gaps = 38/414 (9%)
Strand=Plus/Minus
Query 3982 TCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAGAAAGAACACTT 4041
|||||||||||| ||||||||||||| | |||||| ||||||| || |||||||| |
Sbjct 1397945 TCATATACTTCACATTTGTACTTAATGCCTTTCTCCTCTTGCATATCAGAAAGAAGC--T 1397888
Query 4042 GGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAA---AGGTGTCA 4098
||||||||| | || | |||||||||| | ||| |||||||| || | |||
Sbjct 1397887 GGATATTCTGAGAGAACTGTGTATTTCTCCAACTCAGTTTCTGGAAGAAGAAAAATGTAT 1397828
Query 4099 CATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATA 4158
|||| | | |||| ||||| | | ||||| || |||||| || | |||
Sbjct 1397827 CATTTAGATTCTTATATGATTTTTGCTACAAATAGGCTAAGATGGCCCTGTCTGTTCACG 1397768
Query 4159 GCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAAT 4218
|||| ||||| |||||||| ||||| | || |||||||||||| |||||| ||||
Sbjct 1397767 ACTTCCTTATAAACAGAACTGCCTCCTACTA-----ACCATGTCTACTATATTTGTTAAT 1397713
Query 4219 TCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTA 4278
| ||| ||||| ||||||||||||||||||| ||| ||| |
Sbjct 1397712 TTTGGTTGTTCAATAAGTTTTAAAGCATCATC-CAACCCTTTG----------------- 1397671
Query 4279 TGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGG 4338
| ||| ||||| | |||||||| | |||||||||| | |||| | | | |
Sbjct 1397670 ---GCAAG-------AGTTCTCTACTGAGAACTAAATTAATTCTGTCCTTTACAAGTCAG 1397621
Query 4339 TTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGT 4392
|| | || | || ||||||||||||| |||||| ||||| ||| |||||
Sbjct 1397620 TTTTCCTACAGTATGGAGAACCAAGTCTGACCACCCATCATCACCAAACTCTGT 1397567
>seq7
Length=11971544
Score = 120 bits (132), Expect = 2e-22
Identities = 107/134 (80%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224
|| || |||||||| ||||| |||||||||||| |||||||||| |||| | ||||||
Sbjct 5929880 TTGTAAACAGAACTGCCTCCTATTATCCAGACCCTGTCTACTTTGTTTGTAAGTTCTGGT 5929939
Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284
|| || | ||||||||||||||||| ||||| || || | |||||| |||| ||||||
Sbjct 5929940 TGATCAATCAGTTTTAAAGCATCATCCAAACTTTTGGCAAGAAAATGGGCTCCTTGTGGA 5929999
Query 4285 AGCTCCTTTAGTTC 4298
| ||| | || ||
Sbjct 5930000 GGTTCCCTAAGGTC 5930013
Score = 113 bits (124), Expect = 3e-20
Identities = 88/105 (84%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349
||| ||||| | |||||||| | |||||||||| | |||||||||||||| ||||| ||
Sbjct 5945964 CTTGAGTTCTCTACTGAGAACTAAATTAATTCTGTCCTTTAAAGGCCGGTTTTTCTCTGG 5946023
Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTT 4394
|| |||||||| ||||| ||||||| ||||| |||||||||||
Sbjct 5946024 TATGGAGAACCAGGTCTTCCTACCCATGATCACCAAATTCTGTTT 5946068
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361225650847553
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |