Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq103 181 8e-41 seq7 120 2e-22 >seq103 Length=4964831 Score = 181 bits (200), Expect = 8e-41 Identities = 287/414 (69%), Gaps = 38/414 (9%) Strand=Plus/Minus Query 3982 TCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAGAAAGAACACTT 4041 |||||||||||| ||||||||||||| | |||||| ||||||| || |||||||| | Sbjct 1397945 TCATATACTTCACATTTGTACTTAATGCCTTTCTCCTCTTGCATATCAGAAAGAAGC--T 1397888 Query 4042 GGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAA---AGGTGTCA 4098 ||||||||| | || | |||||||||| | ||| |||||||| || | ||| Sbjct 1397887 GGATATTCTGAGAGAACTGTGTATTTCTCCAACTCAGTTTCTGGAAGAAGAAAAATGTAT 1397828 Query 4099 CATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATA 4158 |||| | | |||| ||||| | | ||||| || |||||| || | ||| Sbjct 1397827 CATTTAGATTCTTATATGATTTTTGCTACAAATAGGCTAAGATGGCCCTGTCTGTTCACG 1397768 Query 4159 GCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAAT 4218 |||| ||||| |||||||| ||||| | || |||||||||||| |||||| |||| Sbjct 1397767 ACTTCCTTATAAACAGAACTGCCTCCTACTA-----ACCATGTCTACTATATTTGTTAAT 1397713 Query 4219 TCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTA 4278 | ||| ||||| ||||||||||||||||||| ||| ||| | Sbjct 1397712 TTTGGTTGTTCAATAAGTTTTAAAGCATCATC-CAACCCTTTG----------------- 1397671 Query 4279 TGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGG 4338 | ||| ||||| | |||||||| | |||||||||| | |||| | | | | Sbjct 1397670 ---GCAAG-------AGTTCTCTACTGAGAACTAAATTAATTCTGTCCTTTACAAGTCAG 1397621 Query 4339 TTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGT 4392 || | || | || ||||||||||||| |||||| ||||| ||| ||||| Sbjct 1397620 TTTTCCTACAGTATGGAGAACCAAGTCTGACCACCCATCATCACCAAACTCTGT 1397567 >seq7 Length=11971544 Score = 120 bits (132), Expect = 2e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 || || |||||||| ||||| |||||||||||| |||||||||| |||| | |||||| Sbjct 5929880 TTGTAAACAGAACTGCCTCCTATTATCCAGACCCTGTCTACTTTGTTTGTAAGTTCTGGT 5929939 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 || || | ||||||||||||||||| ||||| || || | |||||| |||| |||||| Sbjct 5929940 TGATCAATCAGTTTTAAAGCATCATCCAAACTTTTGGCAAGAAAATGGGCTCCTTGTGGA 5929999 Query 4285 AGCTCCTTTAGTTC 4298 | ||| | || || Sbjct 5930000 GGTTCCCTAAGGTC 5930013 Score = 113 bits (124), Expect = 3e-20 Identities = 88/105 (84%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||||||| | |||||||||||||| ||||| || Sbjct 5945964 CTTGAGTTCTCTACTGAGAACTAAATTAATTCTGTCCTTTAAAGGCCGGTTTTTCTCTGG 5946023 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTT 4394 || |||||||| ||||| ||||||| ||||| ||||||||||| Sbjct 5946024 TATGGAGAACCAGGTCTTCCTACCCATGATCACCAAATTCTGTTT 5946068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361225650847553