Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq30 401 7e-107 seq602 385 6e-102 seq418 374 1e-98 seq635 255 7e-63 seq339 132 6e-26 seq446 114 2e-20 seq92 111 2e-19 >seq30 Length=8517879 Score = 401 bits (444), Expect = 7e-107 Identities = 689/994 (69%), Gaps = 16/994 (2%) Strand=Plus/Minus Query 23767 AAATATCGGCAT---TTATGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTT 23823 ||||||| ||| || ||| |||| |||||| |||| || | |||| ||||| Sbjct 2592037 AAATATCAGCACACCTTCAGTTCATTTAGAAGTCAGCATCCAAGGTAAAAGAGTTGTCCG 2591978 Query 23824 CTTGA----GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTA 23879 |||| ||||| || ||||| | || || || || | | || | || || ||| Sbjct 2591977 -TTGAACTTGACATCACACCCATCCTCTGATACTCGCCTAGTCTCTTCTTAAAGAAGTTA 2591919 Query 23880 GTTTTACCTTCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATT 23939 ||||| ||||| ||||| || || ||||| || || ||||||| || | | | Sbjct 2591918 GTTTTGCCTTCCAATGAAATGTTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACC 2591859 Query 23940 CTTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATC 23999 | | || |||| || || | ||| || || || || || || || ||||| Sbjct 2591858 TTGCTGAAGCCCAGCTCCAGTATGAGTCTGTCGGCCACGAATTCAATGTACTGCTTCATT 2591799 Query 24000 ATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCA 24059 | || ||||| || || || || ||||| | ||| || || || || ||||| Sbjct 2591798 AAAGTGCAGTTCATCCCGATGAGATTCACTGGCAAGGCCTTTGTGAGGAACTCCTGTTCT 2591739 Query 24060 ATAGAGACCGCGT---CTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAAT 24116 || ||| || | | ||||| | ||| ||| | | || ||| || | Sbjct 2591738 ATCCTGACAGCATTGACAATTATATTTC-TCTGACTCTCTGCTCCGAAGGTTTATGTAGC 2591680 Query 24117 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAAT 24176 | |||||| ||||| ||||| || ||||| || || || ||||| ||||| ||||||| Sbjct 2591679 AGATGTTTGAACATTAAACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGC 2591620 Query 24177 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 24236 || || ||||| || || |||||||| || || || || || ||||| |||||||| ||| Sbjct 2591619 TCATTCGAAAATGTAAGACCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCA 2591560 Query 24237 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAA 24296 || || ||||||||||| |||||||| ||||| |||||||| | | | |||||||| Sbjct 2591559 AAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAGGCTACTACACATTCTCCATGG 2591500 Query 24297 CCGGCGC---TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 24353 ||| |||| ||||| |||||||| |||||||| |||||||||||| Sbjct 2591499 GTGGCTTCTTTGTCCCCAATCCAACACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGC 2591440 Query 24354 ATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCA 24413 |||||||| ||||| || ||||| | | | || || ||||||||| || ||||| Sbjct 2591439 ATTGTCTCAATAGCGTTGAAGAGGAATTCCCTCTCTTTGGAATCTTTAACGTAAGTATCG 2591380 Query 24414 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAA 24473 || | ||||| |||||||| || || |||||||| ||||| || || || || |||||| Sbjct 2591379 ATGAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAA 2591320 Query 24474 CATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACT 24533 || | || || |||||||| |||||| | ||| || || | || |||||| ||||| Sbjct 2591319 CAGCAGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCACTCACT 2591260 Query 24534 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGT 24593 || || ||||||||||| || || |||| ||||| |||||||||| | || || ||| Sbjct 2591259 ATGCCATCACTGGCTGCGAAGAAAGCCAGGACATGGGATATAAAATATCTCTCCTCAGGT 2591200 Query 24594 GTTA-GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 24652 | | | | ||| | | ||| || | || | ||||| || || |||||||||| Sbjct 2591199 TTCAGGGGCCTCCCAGTGCTGGATGTCCCTGGAAAGGTCCACCTCCTCAGCTGTCCAAAA 2591140 Query 24653 TGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAAC 24712 ||| ||||| ||||| |||||||| | |||||| ||||| |||| || ||||| || || Sbjct 2591139 TGAGGCCTCGGCCTTCTTATACATCTGCCAGATATCATGGTATTCGATGGGAAAGATGAC 2591080 Query 24713 AAATCTATTTGGATTTTTTGCAAGGATTGGTTCC 24746 ||| | | || |||| | |||| ||| ||| Sbjct 2591079 AAAGCGACGGGGGTTTTCTCTTAGGAGTGGCTCC 2591046 >seq602 Length=1640730 Score = 385 bits (426), Expect = 6e-102 Identities = 649/935 (69%), Gaps = 12/935 (1%) Strand=Plus/Plus Query 23788 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA----GACATAACTCCCATT 23843 |||| |||||| |||| || | |||| ||| | |||| ||||| || ||||| Sbjct 122106 TTTAGAAGTCAGCATCCAAGGTAAAAGAGTTGCCCG-TTGAACTTGACATCACGCCCATC 122164 Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903 | | || || || || | || || || |||||||| ||||| ||||| || || Sbjct 122165 CTCTAATACTCGCCTACTCTCTTA---AAGAAGTTAGTTTTGCCTTCCAATGAAATGTTC 122221 Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATC 23963 ||||| || || ||||||| || | | | | | | || |||| || || Sbjct 122222 TCCATAAAGTCAAATGGATTCTCTACTCTGAAAACTTTGCTGAAGCCCAGCTCCAGTATA 122281 Query 23964 AATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 24023 | ||| || || || || || | || ||||| | |||||||| || || || Sbjct 122282 AGTCTGTCCGCCACGAATTCAGTGTACTGCTTCATTAAAGTGCAATTCATCCCGATGAGA 122341 Query 24024 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 24083 || | ||| | ||| | ||||| || || ||||| || ||| || | || || Sbjct 122342 TTTATTGGCAAGGCCTCTGTAAGGAACTCCTGTTCTATCCTGACAGCATTGACGATTATT 122401 Query 24084 GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 24143 ||| ||| | | || ||| || | | |||||| ||||| || || || ||| Sbjct 122402 TCTCTGACTCTCTGCTCCGAAGGTTTATGTAGCAGATGTTTGAACATTAA-CACGCAAAA 122460 Query 24144 TCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 24203 || || || || ||||| ||||| ||||||| | | || ||||| || || || ||||| Sbjct 122461 TCACAATGGAGTCCCTCATCTCTGCTAATTAGTGCATTCGAAAATGTAAGACCAGGCATC 122520 Query 24204 AGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCT 24263 | || || || || ||||| |||||||| ||||| || | ||||||||| |||||||| Sbjct 122521 AATCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACTAGAAAAGAAGATTCCTTCC 122580 Query 24264 ACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGC---TGTCATGTATCCACTTT 24320 ||||| |||||||| | | | ||||||||| ||| |||| ||||| | Sbjct 122581 ACTGCTGCAAAGGCTACTACACATTCTCCATAGGTGGCTTCTTTGTCCCCAATCCAATGC 122640 Query 24321 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAG 24380 |||||||| |||||||| |||||||||||||||||||| ||||| || ||||| | Sbjct 122641 AAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGAAGAGGAAT 122700 Query 24381 tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA 24440 | | || || || ||||| || ||||| || | ||||| |||||||| || || Sbjct 122701 TCCCTCTCTTTGGAATGTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAGTGT 122760 Query 24441 ATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 |||||||| ||||| || || || || |||||||| | || || |||||||| |||||| Sbjct 122761 ATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCAGGCTTCTGTAATCTGAACTTCT 122820 Query 24501 ATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCC 24560 | ||| || | | || ||||||||||||||||| |||||||| || ||||| || Sbjct 122821 TGGCTAAACCGCTTCACCAAGTTTTCATTCACTATTCCATCACTGGCCGCGAAAAAAGCA 122880 Query 24561 AATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCT 24620 | ||||| |||||||||| | || || ||| | || | ||| | | ||| || Sbjct 122881 AGCACATGGGATATAAAATATCTCTCCTCAGGTTTCAGGGCCTCCCAGTGCTGGATGTCC 122940 Query 24621 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 24680 || || | ||||| || || ||||||||||||| ||||| ||||| |||||||| | | Sbjct 122941 TTGGAAAGGTCCACCTCCTCAGCTGTCCAAAATGAGGCCTCGGCCTTCTTATACATCTGC 123000 Query 24681 CAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 ||||| ||||| |||| || ||||| || ||||| Sbjct 123001 CAGATATCATGGTATTTGATGGGAAAGATGACAAA 123035 >seq418 Length=2079112 Score = 374 bits (414), Expect = 1e-98 Identities = 660/959 (69%), Gaps = 16/959 (2%) Strand=Plus/Plus Query 23767 AAATATCGGCAT---TTATGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTT 23823 ||||||| ||| || ||| |||| |||||| |||| || | |||| ||||| Sbjct 761001 AAATATCAGCACACCTTCAGTTCGTTTAGAAGTCAGCATCCAAGGTAAAAGAGTTGTCCG 761060 Query 23824 CTTGA----GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTA 23879 |||| ||||| | ||||| | || || || || || | || || || || ||| Sbjct 761061 -TTGAACTTGACATCATGCCCATCCTCTGATACTCCCCTACTCTCTTCTCAAAGAAGTTA 761119 Query 23880 GTTTTACCTTCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATT 23939 ||||| ||||| ||||| || || ||||| || || ||||||| || | | | Sbjct 761120 GTTTTGCCTTCCAATGAAATGTTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACC 761179 Query 23940 CTTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATC 23999 | | || |||| || || | ||| || || ||||| || || || ||||| Sbjct 761180 TTGCTGAAGCCCAGCTCCAGTATAAGTCTGTCCGCCACAAATTCAATGTACTGCTTCATT 761239 Query 24000 ATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCA 24059 | || ||||| || || || || ||||| | ||| | || || || || ||||| Sbjct 761240 AAAGTGCAGTTCATCCCGATGAGATTCACTGGCAAGGCCTCTGTGAGGAACTCCTGTTCT 761299 Query 24060 ATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAA 24119 || ||| || | || || ||| ||| | | || ||| || | | | Sbjct 761300 ATCCTGACTGCATTGACAATTATTTCTCTGACTCTCTGCTCCAAAGGTTTATGTACCAGA 761359 Query 24120 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 24179 ||||| ||||| ||||| || ||||| || || || ||||| ||||| ||||||| | Sbjct 761360 TGTTTGAACATTAAACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTTA 761419 Query 24180 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 24239 || ||||| || || || ||||| | || || || |||||||| |||||||| ||||| Sbjct 761420 TTCGAAAATGTAAGACCAGGCATCAATCCTCGTTTCTTAAGCCAGAATATGGATGCAAAA 761479 Query 24240 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCG 24299 || |||||| |||| |||||||| ||||| |||||| | ||||||||| | Sbjct 761480 GAACCAGAATAGAAGATTCCTTCCACTGCTCTAAAGGCTCCTACATGTTCTCCATAGGTG 761539 Query 24300 GCGC---TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATT 24356 || |||| ||||| |||||||| |||||||| ||||||||||||||| Sbjct 761540 GCTTCTTTGTCCCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATT 761599 Query 24357 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 24416 ||||| ||||| || ||||| | | | || || |||||||| ||||| || Sbjct 761600 GTCTCAATAGCGTTGAAGAGGAATTCCCTCTCTTTGGAATCTTTAA-----GTATCGATG 761654 Query 24417 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 24476 | ||||| |||||||| || || |||||||| ||||| || || || || |||||||| Sbjct 761655 AGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAG 761714 Query 24477 CTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATT 24536 || || || |||||||| |||||| | ||| || || | || |||||||||||||| Sbjct 761715 CTGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACAAAGTTTTCATTCACTATG 761774 Query 24537 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 24596 || |||||||| || || || |||| ||||| |||||||||| | || || ||| | Sbjct 761775 CCATCACTGGCCGCGAAGAAAGCCAGCACATGGGATATAAAATATCTCTCCTCAGGTTTC 761834 Query 24597 AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 24656 || | ||| | | ||| || || || | ||||| || || ||||||||| ||| Sbjct 761835 AGGGCCTCCCAGTGCTGGATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAGTGAA 761894 Query 24657 GCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 ||||| || || |||||||| | ||| || ||||| |||| || ||||| || ||||| Sbjct 761895 GCCTCGGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATGGGAAAGATGACAAA 761953 >seq635 Length=1382696 Score = 255 bits (282), Expect = 7e-63 Identities = 344/474 (73%), Gaps = 5/474 (1%) Strand=Plus/Plus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 |||||||| |||||| | ||| ||| | || | || |||||||||||| || || | | Sbjct 1180144 GTGAATTGGATGGGATAAGCTGCTGGTCTTGTCCTTAAATAGTACATTCCAGTCTTCAAA 1180203 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || | |||| ||||| || |||||||| || || ||| || | || || | || Sbjct 1180204 CCCTGCTTCCAGCCGTAGAAGTGCATACTAGTGAGCTTGCCGTAGTTAGGCTCAGTAATG 1180263 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 |||||||||| || || |||||||| ||||| || || || || || |||| || | Sbjct 1180264 TGGATATTCAGTGACTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCAGCTTGAGA 1180323 Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 53047 | || || || | |||||||| | ||| ||||| | | |||| | ||| ||||||| Sbjct 1180324 ACTGTTTTCTGAGAGATTTCCCACACAGTCTTATACAGTTGCTTCAGATCATCTGGAATT 1180383 Query 53048 TTTG-TAT--TCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 53104 | || ||| |||| || |||||| | | ||||| || || ||||| |||||| Sbjct 1180384 TCTGGTATGCTCTGGATGGATCCATTACACGCAGTAATCTGGTTTTTCATCTCTTCATTC 1180443 Query 53105 CATAATTTTCTCTCGGTTAAAACTCTA-AGGAGATGCGGATTAACTACTTGAAATTCTCC 53163 ||||| | | | || || | ||| || | ||| ||||| || | ||||||||||| Sbjct 1180444 CATAAGCCCCGCCCAGT-AAGATTCTTCAGTAAATGAGGATTTACAATCTGAAATTCTCC 1180502 Query 53164 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 53223 || || ||||| |||||||| ||||| |||||||| ||||| | ||||||||||||||| Sbjct 1180503 CGATAAGACTCTACGAGTGTAGATATTGCTGGTATAAGGTTCAATAGACTCATTATTTCC 1180562 Query 53224 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCT 53277 || ||| ||||||||||| ||||| ||||| || || | | |||||| || || Sbjct 1180563 CAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGAGCAATAAGTAAACTGTTCCT 1180616 >seq339 Length=2552696 Score = 132 bits (146), Expect = 6e-26 Identities = 106/128 (83%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| || || ||||| |||||||| ||||| |||||||| ||||| | | Sbjct 2056698 ACCTGAAATTCTCCCGATAAGACTCTACGAGTGTAGATATTGCTGGTATAAGGTTCAATA 2056639 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 |||||||||||||||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 2056638 GACTCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATCGGAGCAATAAGTAAA 2056579 Query 53270 CTATTTCT 53277 || || || Sbjct 2056578 CTGTTCCT 2056571 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| |||||||||||||| | || || || || || || || || || | Sbjct 2031457 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACAGCAATCCTTGCTGCCAGGA 2031398 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || || | ||||| ||||| ||| |||| || | || || |||| Sbjct 2031397 TGGCATAGTCAGGGTGCTTAGTAGTCAGGGTGGCAGCTGTTTCAGCAGCCAATGTATCCA 2031338 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || ||| |||||| || |||||||| ||||| Sbjct 2031337 GTTCCACAGTGGTAACCCCACTATATAAGCCCTGGATAACTTTCAT 2031292 Score = 95.1 bits (104), Expect = 1e-14 Identities = 100/129 (78%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || ||||||||||||||||||||| || |||||||| || | || || || |||| | Sbjct 2043623 CTCCACTCGTTTCATAAAGAGATCCGGGATCCAAAGGGCAAAGAAGAGGTCCCTGGCCCG 2043564 Query 54085 ATGTTCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCC 54143 || || || ||||||||||| || |||||| || |||||| | | || || |||||| Sbjct 2043563 CTGCTCTTCCTTTCCTGTATTTTTCTTTAAG-TCAAGGAACTCAAAGATGTCTAAATGCC 2043505 Query 54144 ACGGTTCCA 54152 | ||||||| Sbjct 2043504 ATGGTTCCA 2043496 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447 |||| || || ||||| || || || || |||||||| || || || || || || | Sbjct 2048235 CATAGGTTTCATATGGGCCCAGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAGGCTCCAT 2048176 Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507 ||||||||||||| ||||| | ||||| || || || || | || ||||| |||| Sbjct 2048175 AATAAATGGTTTCAAAGATTTGTTTATTCAGTAACTGGGCCTCTGGACTTTCAAAAGGAT 2048116 Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567 | | ||||||||| || ||||| || ||||| || || || || || || | || | Sbjct 2048115 ACCGCATGAGAATAAAAGCATCTGCCAAACCTTGTACCCCGATTCCAATGGGGCGGTGAC 2048056 Query 53568 TCTTATTAGA 53577 ||||| || Sbjct 2048055 GTTTATTTGA 2048046 >seq446 Length=2046506 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||||| || || ||||| || || || ||||| || || || || | Sbjct 492610 CCTCATCTCTGCTAATTAGCTCATTTGAAAATGTAAGACCAGGCATCAGTCCTCGTTTCT 492551 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| |||||||| ||||| || ||||||||||| |||||||| ||||| ||||||| Sbjct 492550 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAGG 492491 Query 24277 C 24277 | Sbjct 492490 C 492490 >seq92 Length=5367877 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| || || | || |||||||| |||||||| ||||| ||||| | ||||| Sbjct 3850914 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTTTTTTTT 3850855 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 24277 ||||||||||| | || || ||||| |||||||||||||||||||| || || ||||| Sbjct 3850854 AGCCAAAATATAGCAGCGAAAGATCCTGAAAAGAAAATTCCTTCTACAGCAGCGAAGGC 3850796 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 24519 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 24578 ||||||||||| || ||||| ||||||||||||||||| ||||| | || |||||| Sbjct 3842359 AAATTTTCATTTACGATTCCATCACTGGCTGCAAAAAAGGCCAAGATGTGAGAGATAAAA 3842300 Query 24579 TATTTTTCGTCTGGTGTTAGTTTATTCCA 24607 ||||| || || ||||| || || ||||| Sbjct 3842299 TATTTCTCATCCGGTGTAAGCTTGTTCCA 3842271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593678532919440