Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_001731.1
Length=190289
Score E
Sequences producing significant alignments: (Bits) Value
seq660 307 1e-78
seq222 123 3e-23
seq453 120 4e-22
seq27 104 3e-17
seq550 82.4 9e-11
>seq660
Length=1287968
Score = 307 bits (340), Expect = 1e-78
Identities = 271/338 (80%), Gaps = 0/338 (0%)
Strand=Plus/Minus
Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116
||||||||||||||||||| ||| | | | ||| || ||||| ||||||||||||||
Sbjct 90743 AGCAGGGCCTCGATGTCGGCCTCGATGTCGGCGGTGGGGAAGCGGCGGCTGTACCTGCGC 90684
Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176
|| ||| |||||| ||||||| |||||||||||||||||||| ||||||||||||
Sbjct 90683 ACCGGCACGCCGTCGCGGCCCACCAGGAACTTCTCGAAGTTCCAGGAGACGTCGTTGCGG 90624
Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236
||||| || ||||||| ||||||| ||||||| ||| ||||| | |||||||||
Sbjct 90623 CACACGGGCGACCAGGTGATGAGCTTGGGGTCGGTCATGAGCGAGACGGCGTCGTCGCTG 90564
Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296
|| | ||||||||||| || ||||||||||||||||| || ||| || ||||| ||
Sbjct 90563 GGGACGGGCAGGGCCTCCCGCAGGAAGGCGAAGAGCGGGTGCGCCTGCGCGCCGTTCACG 90504
Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356
|||||||||||||| ||||| ||||| |||||||| ||| || || ||||| | |||
Sbjct 90503 TCGCACTTCTCGAACAGCATGAAGTTGGGCTCGAACCCGCCGCCGGGTCGGACATACTTG 90444
Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394
|||||| ||||||||| |||||| | |||| |||||
Sbjct 90443 AGGGAATTCAAGATCTCTTCATTCTTGCCGTTCTCCTG 90406
Score = 147 bits (162), Expect = 3e-30
Identities = 156/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 83396 TGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGC 83455
|| ||||||||||| || ||||| || ||||| ||||| ||||||| || | ||||||
Sbjct 90100 TGCCCGAACTGGTTGCAGGGGAAGCCGAGCACGACCAGGCCCCGAGGCCCCAAGCGCCGG 90041
Query 83456 TGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTC 83515
||||| || |||||||| ||||| ||||||||||| | |||||||| || || || ||
Sbjct 90040 TGCAGGTCATTCATCTGGGTGTAGTCCCGGACCGTCGTCCCTCAGAGCGAGGCCACATTT 89981
Query 83516 TCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATC 83575
|| ||||||| ||| |||||| | | |||| | | || | || || |||| | |
Sbjct 89980 TCAATGAGCAGCACCTTGCCCCGCAGGGAGCCCAGGTCCAGGGCGTCCCCGCCGGACAGC 89921
Query 83576 GGGCGTGCTGAGAAGGCGTACACAGA 83601
||||| || | |||||||| ||| ||
Sbjct 89920 GGGCGCGCGGTGAAGGCGTGCACGGA 89895
>seq222
Length=3305530
Score = 123 bits (136), Expect = 3e-23
Identities = 190/266 (71%), Gaps = 4/266 (2%)
Strand=Plus/Plus
Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468
||| |||||| || |||| | ||| ||| || ||| ||||||||| ||| |||
Sbjct 845086 GCAGCTGCGCGGCATCTACGAGAGCAGCCAG-TCCATCGGCAACTTCGCGTCGCGCCTGC 845144
Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528
| ||| || |||| || |||||||| || |||||||||| || ||| | |||||||
Sbjct 845145 TGGTGCACCTGTTCCCCGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 845204
Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587
|||||| |||||||| |||| || |||||| ||| | || | |||| |||||
Sbjct 845205 GCGGCTCGCTGGGCAAGAAGCAG-CTGGACCCGGCCCGCATCCGGCTCATCCGCCACTAC 845263
Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGCG 50647
|||||| |||| |||| ||| ||||| ||| | |||| ||||| |||
Sbjct 845264 GTGCAGCTGCTCTACCCCCGGGCCAAGAACGACCGCATCTGGACGCTGGAGTTCGTGGGC 845323
Query 50648 TGCCTGGACGAGCGCTGCCGGCGCCG 50673
|||||||||||||||||||||||
Sbjct 845324 AAGCTGGACGAGCGCTGCCGGCGCCG 845349
>seq453
Length=1954138
Score = 120 bits (132), Expect = 4e-22
Identities = 191/279 (68%), Gaps = 35/279 (13%)
Strand=Plus/Plus
Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116
||||||||||||||||||| ||||| | | | ||| || ||| |||||||||||| |||
Sbjct 7678 AGCAGGGCCTCGATGTCGGCCTCCATGTCGATGGTGGGGAAGCAGTGGCTGTACCT-CGC 7736
Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176
|| |||| |||| |||||||||||| || | | |
Sbjct 7737 ACCGGCG----------------------CTTCGCGAAGTTCCAGGAGACTTTG-----G 7769
Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236
| |||||| ||||||| |||| || || |||| ||| ||| | | || ||||
Sbjct 7770 CCCACTGGCGACCAGGTGATGAACTTGGAGTCGGTCATGAGAGAAGCGGCGGCGGCGCTG 7829
Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296
| | || |||||||| || ||||||||||||||||| || || | ||| ||
Sbjct 7830 CGGACAGGTAGGGCCTCGCGCAGGAAGGCGAAGAGCGGGTGCGC-------CTGTTCACG 7882
Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCG 83335
||||||||||| || ||| | ||||| |||||||| |||
Sbjct 7883 TCGCACTTCTCAAACAGCGTGAAGTTGGGCTCGAACCCG 7921
>seq27
Length=8532063
Score = 104 bits (114), Expect = 3e-17
Identities = 118/156 (76%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 83299 GCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAG 83358
|||||| | || ||||| ||||| |||| || ||| | ||||| | ||| ||| ||
Sbjct 5010120 GCACTTTTTAAACAGCATTAAGTTGGGCTT-AACCCGCTGCCAGGTCAGACAGACTTGAG 5010178
Query 83359 GGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAA 83418
|||| ||||||||| |||||| || ||| ||||| || ||||||||||| || ||| |
Sbjct 5010179 GGAATTCAAGATCTCTTCATTCTTGGTGTTCTCCTGATGCCCGAACTGGTTGCAAGGGGA 5010238
Query 83419 CCCAAGCACTACCAGCCCCCGA-GCTCCTAGGCGCC 83453
|| ||||| ||||| ||| || ||| | | |||||
Sbjct 5010239 GCCGAGCACCACCAGGCCCTGAGGCTGCCAAGCGCC 5010274
>seq550
Length=1596736
Score = 82.4 bits (90), Expect = 9e-11
Identities = 109/151 (72%), Gaps = 3/151 (2%)
Strand=Plus/Plus
Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450
|||| || || || ||||| || ||||| ||||| || ||||| | || | | ||
Sbjct 1358299 CCTGATGTCCAAATTGGTTGCAAGGGAAGCCAAGAACCACCAGGCGCCTGGGA---AAGC 1358355
Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510
| | ||||||||||| | || ||||| |||||| || | ||||||||||| ||||
Sbjct 1358356 GGCATTGCAGCTCGTTGAGTTGGGTGTAGTCCCGGGTGGTTGTGCCTCAGAGGGAAGCTA 1358415
Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541
| ||||| || |||| | ||| ||| || ||
Sbjct 1358416 CATTCTCAATCAGCACGGCCCTGCCTCGAAA 1358446
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 608752639402120
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