Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq660 307 1e-78 seq222 123 3e-23 seq453 120 4e-22 seq27 104 3e-17 seq550 82.4 9e-11 >seq660 Length=1287968 Score = 307 bits (340), Expect = 1e-78 Identities = 271/338 (80%), Gaps = 0/338 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||||||||||||||||||| ||| | | | ||| || ||||| |||||||||||||| Sbjct 90743 AGCAGGGCCTCGATGTCGGCCTCGATGTCGGCGGTGGGGAAGCGGCGGCTGTACCTGCGC 90684 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| |||||| ||||||| |||||||||||||||||||| |||||||||||| Sbjct 90683 ACCGGCACGCCGTCGCGGCCCACCAGGAACTTCTCGAAGTTCCAGGAGACGTCGTTGCGG 90624 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| || ||||||| ||||||| ||||||| ||| ||||| | ||||||||| Sbjct 90623 CACACGGGCGACCAGGTGATGAGCTTGGGGTCGGTCATGAGCGAGACGGCGTCGTCGCTG 90564 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || | ||||||||||| || ||||||||||||||||| || ||| || ||||| || Sbjct 90563 GGGACGGGCAGGGCCTCCCGCAGGAAGGCGAAGAGCGGGTGCGCCTGCGCGCCGTTCACG 90504 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||| ||||| ||||| |||||||| ||| || || ||||| | ||| Sbjct 90503 TCGCACTTCTCGAACAGCATGAAGTTGGGCTCGAACCCGCCGCCGGGTCGGACATACTTG 90444 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 |||||| ||||||||| |||||| | |||| ||||| Sbjct 90443 AGGGAATTCAAGATCTCTTCATTCTTGCCGTTCTCCTG 90406 Score = 147 bits (162), Expect = 3e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 83396 TGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGC 83455 || ||||||||||| || ||||| || ||||| ||||| ||||||| || | |||||| Sbjct 90100 TGCCCGAACTGGTTGCAGGGGAAGCCGAGCACGACCAGGCCCCGAGGCCCCAAGCGCCGG 90041 Query 83456 TGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTC 83515 ||||| || |||||||| ||||| ||||||||||| | |||||||| || || || || Sbjct 90040 TGCAGGTCATTCATCTGGGTGTAGTCCCGGACCGTCGTCCCTCAGAGCGAGGCCACATTT 89981 Query 83516 TCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATC 83575 || ||||||| ||| |||||| | | |||| | | || | || || |||| | | Sbjct 89980 TCAATGAGCAGCACCTTGCCCCGCAGGGAGCCCAGGTCCAGGGCGTCCCCGCCGGACAGC 89921 Query 83576 GGGCGTGCTGAGAAGGCGTACACAGA 83601 ||||| || | |||||||| ||| || Sbjct 89920 GGGCGCGCGGTGAAGGCGTGCACGGA 89895 >seq222 Length=3305530 Score = 123 bits (136), Expect = 3e-23 Identities = 190/266 (71%), Gaps = 4/266 (2%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| |||||| || |||| | ||| ||| || ||| ||||||||| ||| ||| Sbjct 845086 GCAGCTGCGCGGCATCTACGAGAGCAGCCAG-TCCATCGGCAACTTCGCGTCGCGCCTGC 845144 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| || |||||||| || |||||||||| || ||| | ||||||| Sbjct 845145 TGGTGCACCTGTTCCCCGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 845204 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 |||||| |||||||| |||| || |||||| ||| | || | |||| ||||| Sbjct 845205 GCGGCTCGCTGGGCAAGAAGCAG-CTGGACCCGGCCCGCATCCGGCTCATCCGCCACTAC 845263 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGCG 50647 |||||| |||| |||| ||| ||||| ||| | |||| ||||| ||| Sbjct 845264 GTGCAGCTGCTCTACCCCCGGGCCAAGAACGACCGCATCTGGACGCTGGAGTTCGTGGGC 845323 Query 50648 TGCCTGGACGAGCGCTGCCGGCGCCG 50673 ||||||||||||||||||||||| Sbjct 845324 AAGCTGGACGAGCGCTGCCGGCGCCG 845349 >seq453 Length=1954138 Score = 120 bits (132), Expect = 4e-22 Identities = 191/279 (68%), Gaps = 35/279 (13%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||||||||||||||||||| ||||| | | | ||| || ||| |||||||||||| ||| Sbjct 7678 AGCAGGGCCTCGATGTCGGCCTCCATGTCGATGGTGGGGAAGCAGTGGCTGTACCT-CGC 7736 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || |||| |||| |||||||||||| || | | | Sbjct 7737 ACCGGCG----------------------CTTCGCGAAGTTCCAGGAGACTTTG-----G 7769 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 | |||||| ||||||| |||| || || |||| ||| ||| | | || |||| Sbjct 7770 CCCACTGGCGACCAGGTGATGAACTTGGAGTCGGTCATGAGAGAAGCGGCGGCGGCGCTG 7829 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 | | || |||||||| || ||||||||||||||||| || || | ||| || Sbjct 7830 CGGACAGGTAGGGCCTCGCGCAGGAAGGCGAAGAGCGGGTGCGC-------CTGTTCACG 7882 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCG 83335 ||||||||||| || ||| | ||||| |||||||| ||| Sbjct 7883 TCGCACTTCTCAAACAGCGTGAAGTTGGGCTCGAACCCG 7921 >seq27 Length=8532063 Score = 104 bits (114), Expect = 3e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 83299 GCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAG 83358 |||||| | || ||||| ||||| |||| || ||| | ||||| | ||| ||| || Sbjct 5010120 GCACTTTTTAAACAGCATTAAGTTGGGCTT-AACCCGCTGCCAGGTCAGACAGACTTGAG 5010178 Query 83359 GGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAA 83418 |||| ||||||||| |||||| || ||| ||||| || ||||||||||| || ||| | Sbjct 5010179 GGAATTCAAGATCTCTTCATTCTTGGTGTTCTCCTGATGCCCGAACTGGTTGCAAGGGGA 5010238 Query 83419 CCCAAGCACTACCAGCCCCCGA-GCTCCTAGGCGCC 83453 || ||||| ||||| ||| || ||| | | ||||| Sbjct 5010239 GCCGAGCACCACCAGGCCCTGAGGCTGCCAAGCGCC 5010274 >seq550 Length=1596736 Score = 82.4 bits (90), Expect = 9e-11 Identities = 109/151 (72%), Gaps = 3/151 (2%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || || ||||| || ||||| ||||| || ||||| | || | | || Sbjct 1358299 CCTGATGTCCAAATTGGTTGCAAGGGAAGCCAAGAACCACCAGGCGCCTGGGA---AAGC 1358355 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 | | ||||||||||| | || ||||| |||||| || | ||||||||||| |||| Sbjct 1358356 GGCATTGCAGCTCGTTGAGTTGGGTGTAGTCCCGGGTGGTTGTGCCTCAGAGGGAAGCTA 1358415 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541 | ||||| || |||| | ||| ||| || || Sbjct 1358416 CATTCTCAATCAGCACGGCCCTGCCTCGAAA 1358446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608752639402120