Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq24 111 1e-19 seq41 84.2 2e-11 >seq24 Length=8999101 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| || | || | ||| | |||||||||||||||||||| ||||||| | Sbjct 2890500 CCACCACGCAGTCTCAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCCGAC 2890559 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || |||||||| ||||| ||| |||| || | |||||||| || Sbjct 2890560 AGAGTATGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGGA 2890619 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||| || || |||||| |||||| | | | |||||| |||||| Sbjct 2890620 ATGCCTTCTTTATCCTGGATCTTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGACC 2890679 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | || |||||||| || || | || || || || || ||||| ||| Sbjct 2890680 TCGAGCGTGATGGTCTTCCCAGTGAGGGTCTTCACGAAAATCTGCATCTTG 2890730 >seq41 Length=6870668 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/217 (69%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| || |||| | || |||| ||||| | || || | ||| Sbjct 2879618 AGGACCAGGTGCAGGGTTAACTCTTCCTGGCTGTTGTAGTCAGAAAGAGTGCAGCTGTCT 2879677 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || ||||||||||| ||| | ||||||||| || Sbjct 2879678 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTC--GGGGGATGCCTTCCTTATCT 2879735 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 | | |||| ||||| | ||| ||||| | || | | ||||| ||| ||||| Sbjct 2879736 G-GGTCTTGGCCTTCACATTCTCGATGGTATCGCTAGGTTTCACTTCCAGGGTGATGGTT 2879794 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 ||||| | | || || || || ||||||||||||| Sbjct 2879795 TTGCCATTCAGGGTCTTCACGAAGATTTGCATTTTGA 2879831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422229336113948