Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq24 111 1e-19
seq41 84.2 2e-11
>seq24
Length=8999101
Score = 111 bits (122), Expect = 1e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| || | || | ||| | |||||||||||||||||||| ||||||| |
Sbjct 2890500 CCACCACGCAGTCTCAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCCGAC 2890559
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || || | || |||||||| ||||| ||| |||| || | |||||||| ||
Sbjct 2890560 AGAGTATGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGGA 2890619
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| |||||| || || |||||| |||||| | | | |||||| ||||||
Sbjct 2890620 ATGCCTTCTTTATCCTGGATCTTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGACC 2890679
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179
|| | || |||||||| || || | || || || || || ||||| |||
Sbjct 2890680 TCGAGCGTGATGGTCTTCCCAGTGAGGGTCTTCACGAAAATCTGCATCTTG 2890730
>seq41
Length=6870668
Score = 84.2 bits (92), Expect = 2e-11
Identities = 150/217 (69%), Gaps = 3/217 (1%)
Strand=Plus/Plus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
|| |||| |||| || |||| | || |||| ||||| | || || | |||
Sbjct 2879618 AGGACCAGGTGCAGGGTTAACTCTTCCTGGCTGTTGTAGTCAGAAAGAGTGCAGCTGTCT 2879677
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|||||||| ||||| ||| | || || ||||||||||| ||| | ||||||||| ||
Sbjct 2879678 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTC--GGGGGATGCCTTCCTTATCT 2879735
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
| | |||| ||||| | ||| ||||| | || | | ||||| ||| |||||
Sbjct 2879736 G-GGTCTTGGCCTTCACATTCTCGATGGTATCGCTAGGTTTCACTTCCAGGGTGATGGTT 2879794
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180
||||| | | || || || || |||||||||||||
Sbjct 2879795 TTGCCATTCAGGGTCTTCACGAAGATTTGCATTTTGA 2879831
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422229336113948
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |