Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_002188.1
Length=288539
Score E
Sequences producing significant alignments: (Bits) Value
seq163 114 2e-20
>seq163
Length=3864798
Score = 114 bits (126), Expect = 2e-20
Identities = 122/161 (76%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 51895 GCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATA 51954
|| || |||| ||||| |||||| ||||| | || || ||||| || || ||||| ||
Sbjct 18375 GCTTTGTGGTGGTACTTTATATCTAAAGGAGTTGAGTATTTGGACACAGTGTTTTTTATC 18434
Query 51955 CTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTT 52014
|| ||||| ||| ||||| || ||| || || ||||||||||||| ||| ||||||
Sbjct 18435 CTGAGGAAGAAAAACAATCAAGTCTCTTTCCTTCATGTATATCATCATTGTACAATGTTT 18494
Query 52015 ACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055
|| || | ||||| || ||||| ||| |||| ||||| ||
Sbjct 18495 ACACTGTGGTGGATTGGAATTAAGTGGGTTGCAGGAGGACA 18535
Score = 91.5 bits (100), Expect = 3e-13
Identities = 102/133 (77%), Gaps = 4/133 (3%)
Strand=Plus/Plus
Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116
|||||||||||||| ||| | ||||| || || ||||| || |||||| | || |||||
Sbjct 20741 GCATTTTTTGGAGCCCAGATGAATTCCTTCATTCATGTGATCATGTACTCATACTATGGG 20800
Query 52117 ATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTA 52174
| | || | ||| || ||| ||||| ||||| || ||||||||||| || || || |
Sbjct 20801 TTAACAGCATTTGG-CCCATGGATTCAG-AAGTACCTTTGGTGGAAACGATACCTGACCA 20858
Query 52175 TAATGCAGTTGGT 52187
| ||||||||||
Sbjct 20859 TGCTGCAGTTGGT 20871
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 923129833612120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |