Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq9 105 8e-18 seq740 104 3e-17 seq1618 102 9e-17 seq39 100 3e-16 seq650 98.7 1e-15 seq197 98.7 1e-15 seq24 93.3 5e-14 seq41 91.5 2e-13 >seq9 Length=10989404 Score = 105 bits (116), Expect = 8e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 6494326 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 6494385 Query 60124 TATACTACCGAGGATTGA 60141 ||||||| |||||| ||| Sbjct 6494386 TATACTAACGAGGACTGA 6494403 >seq740 Length=1116153 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 758831 TTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 758772 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 758771 CTATACTAACGAGGA 758757 >seq1618 Length=105872 Score = 102 bits (112), Expect = 9e-17 Identities = 73/83 (88%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 60056 GAAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 |||||||| || ||| || | |||||| |||||| ||||||||||||||||||||| || Sbjct 44507 GAAAAATTATCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 44448 Query 60115 ACTCACCACTATACTACCGAGGA 60137 |||||||||||||||| |||||| Sbjct 44447 ACTCACCACTATACTAACGAGGA 44425 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 89919 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 89860 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 89859 TACTAACGAGGACTG 89845 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 70442 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 70383 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 70382 TACTAACGAGGA 70371 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 105265 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 105206 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 105205 TACTAACGAGGA 105194 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 41419 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 41360 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 41359 ATACTAACGAGGA 41347 >seq39 Length=7040410 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 3811356 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 3811297 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 3811296 TACTAACGAGGAT 3811284 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 3804837 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 3804778 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 3804777 ATACTAACGAGGA 3804765 >seq650 Length=1370792 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 29052 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 28993 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 28992 TACTAACGAGGA 28981 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 35970 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 35911 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 35910 TACTAACGAGGA 35899 >seq197 Length=3815976 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 234486 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 234545 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 234546 TACTAACGAGGA 234557 >seq24 Length=8999101 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 ||| || | ||| | |||| |||||||||||| ||||| || | |||||| || | || Sbjct 2890514 CAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCCGACAGAGTATGCCCATC 2890573 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || |||||||| ||||| || || || || |||||||| | || | || || || || Sbjct 2890574 TTCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGGAATGCCTTCTTTATC 2890633 Query 43091 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 43150 | ||| || ||| | || | | || || | || || |||| ||||||||| Sbjct 2890634 CTGGATCTTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGACCTCGAGCGTGATGGT 2890693 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || || || || ||||| || || || ||||| || Sbjct 2890694 CTTCCCAGTGAGGGTCTTCACGAAAATCTGCATCTT 2890729 >seq41 Length=6870668 Score = 91.5 bits (100), Expect = 2e-13 Identities = 136/187 (73%), Gaps = 7/187 (4%) Strand=Plus/Plus Query 43005 TTGTAATCAGCCAGAGTCC-GCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTG 43063 ||||| |||| ||||| | ||| ||| || |||||||| ||||| || ||||| | ||| Sbjct 2879651 TTGTAGTCAGAAAGAGTGCAGCT-GTCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTG 2879709 Query 43064 CTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGT 43122 |||||||| || | || ||||| || || | || | || | || | | || | Sbjct 2879710 CTGGTCGG--GGGATGCCTTCCTTATC--TGGGTCTTGGCCTTCACATTCTCGATGGTAT 2879765 Query 43123 CGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCA 43182 |||| | || ||| || | |||||||||||||| | || ||||| || |||||||||| Sbjct 2879766 CGCTAGGTTTCACTTCCAGGGTGATGGTTTTGCCATTCAGGGTCTTCACGAAGATTTGCA 2879825 Query 43183 TTTTTAC 43189 |||| || Sbjct 2879826 TTTTGAC 2879832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571776121780840