Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq41 93.3 3e-14 seq24 91.5 1e-13 seq608 89.7 3e-13 >seq41 Length=6870668 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/212 (70%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || |||| ||| |||||||||| || || | | ||| Sbjct 2879618 AGGACCAGGTGCAGGGTTAACTCTTCCTGGCTGTTGTAGTCAGAAAGAGTGCAGCTGTCT 2879677 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||| || || ||||||| |||||||||| ||| | || ||||| || Sbjct 2879678 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCG--GGGGATGCCTTCCTTATCT 2879735 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 | |||| ||| | || | || | |||| | | || || |||| ||||||||| Sbjct 2879736 GGG-TCTTGGCCTTCACATTCTCGATGGTATCGCTAGGTTTCACTTCCAGGGTGATGGTT 2879794 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| | || || ||||| ||||| ||||| Sbjct 2879795 TTGCCATTCAGGGTCTTCACGAAGATTTGCAT 2879826 >seq24 Length=8999101 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| |||| || || || | || || || || ||||||||||| ||| Sbjct 2890500 CCACCACGCAGTCTCAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCCGAC 2890559 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || | | | || |||| ||||||||| || ||||| || || |||||||| || Sbjct 2890560 AGAGTATGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGGA 2890619 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || || || || ||| || ||||| | || |||| | ||| | | ||||| Sbjct 2890620 ATGCCTTCTTTATCCTGGATC-TTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGAC 2890678 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||||||| || || ||||| || ||||| || ||||||||| Sbjct 2890679 CTCGAGCGTGATGGTCTTCCCAGTGAGGGTCTTCACGAAAATCTGCATC 2890727 >seq608 Length=1396534 Score = 89.7 bits (98), Expect = 3e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 34181 ACCAGGTGTAAAGT--ACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGT 34238 |||||||| | || ||||| ||||| ||||||||||| || || ||| | || | Sbjct 1124034 ACCAGGTGCAGGGTCAACTTT--TTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTT 1123977 Query 34239 CCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGG 34298 |||||||||| || || || ||||||| |||||| || | | | || ||||| || Sbjct 1123976 CCAACTGCTTTCCAGCAAAGATGAGCCTCTGCTGATCAGAGAGAATGCCTTCCTTATCCT 1123917 Query 34299 CTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTT 34358 ||||| ||| | || |||| ||||| | ||| | |||| |||||||||| Sbjct 1123916 GGATCTTGGCCTTCACATTCTCTATGGAATCACTGAGTTCCATTTCCAGGGTGATGGTTT 1123857 Query 34359 TGCCGGTGAGAGTTTTCACAAAGAT 34383 || | || || | ||||||||||| Sbjct 1123856 TGTCAGTCAGGATCTTCACAAAGAT 1123832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323049151035680