Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq41 93.3 3e-14
seq24 91.5 1e-13
seq608 89.7 3e-13
>seq41
Length=6870668
Score = 93.3 bits (102), Expect = 3e-14
Identities = 149/212 (70%), Gaps = 3/212 (1%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| |||||||| | || |||| ||| |||||||||| || || | | |||
Sbjct 2879618 AGGACCAGGTGCAGGGTTAACTCTTCCTGGCTGTTGTAGTCAGAAAGAGTGCAGCTGTCT 2879677
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|||| ||||||||| || || ||||||| |||||||||| ||| | || ||||| ||
Sbjct 2879678 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCG--GGGGATGCCTTCCTTATCT 2879735
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
| |||| ||| | || | || | |||| | | || || |||| |||||||||
Sbjct 2879736 GGG-TCTTGGCCTTCACATTCTCGATGGTATCGCTAGGTTTCACTTCCAGGGTGATGGTT 2879794
Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
||||| | || || ||||| ||||| |||||
Sbjct 2879795 TTGCCATTCAGGGTCTTCACGAAGATTTGCAT 2879826
>seq24
Length=8999101
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| |||| || || || | || || || || ||||||||||| |||
Sbjct 2890500 CCACCACGCAGTCTCAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCCGAC 2890559
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| | | | || |||| ||||||||| || ||||| || || |||||||| ||
Sbjct 2890560 AGAGTATGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGGA 2890619
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341
| || || || || ||| || ||||| | || |||| | ||| | | |||||
Sbjct 2890620 ATGCCTTCTTTATCCTGGATC-TTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGAC 2890678
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390
|| | ||||||||| || || ||||| || ||||| || |||||||||
Sbjct 2890679 CTCGAGCGTGATGGTCTTCCCAGTGAGGGTCTTCACGAAAATCTGCATC 2890727
>seq608
Length=1396534
Score = 89.7 bits (98), Expect = 3e-13
Identities = 144/205 (70%), Gaps = 4/205 (2%)
Strand=Plus/Minus
Query 34181 ACCAGGTGTAAAGT--ACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGT 34238
|||||||| | || ||||| ||||| ||||||||||| || || ||| | || |
Sbjct 1124034 ACCAGGTGCAGGGTCAACTTT--TTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTT 1123977
Query 34239 CCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGG 34298
|||||||||| || || || ||||||| |||||| || | | | || ||||| ||
Sbjct 1123976 CCAACTGCTTTCCAGCAAAGATGAGCCTCTGCTGATCAGAGAGAATGCCTTCCTTATCCT 1123917
Query 34299 CTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTT 34358
||||| ||| | || |||| ||||| | ||| | |||| ||||||||||
Sbjct 1123916 GGATCTTGGCCTTCACATTCTCTATGGAATCACTGAGTTCCATTTCCAGGGTGATGGTTT 1123857
Query 34359 TGCCGGTGAGAGTTTTCACAAAGAT 34383
|| | || || | |||||||||||
Sbjct 1123856 TGTCAGTCAGGATCTTCACAAAGAT 1123832
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323049151035680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |