Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq30 293 2e-74 seq602 291 8e-74 seq418 286 3e-72 seq446 122 8e-23 seq92 93.3 4e-14 >seq30 Length=8517879 Score = 293 bits (324), Expect = 2e-74 Identities = 514/745 (69%), Gaps = 10/745 (1%) Strand=Plus/Minus Query 15927 TTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTC 15986 ||||||| || ||| | ||||| || | | |||||| | |||||| || ||||| | Sbjct 2591971 TTGACATCACACCCATCCTCTGATACTCGCCTAGTCTCTTCTTAAAGAAGTTAGTTTTGC 2591912 Query 15987 CTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGC 16046 |||| |||||||| || |||||||| ||||| ||||| | | | | || | Sbjct 2591911 CTTCCAATGAAATGTTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTGA 2591852 Query 16047 ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC 16106 | |||| |||| | | ||| || ||||| ||||| || ||||| ||||||||| | Sbjct 2591851 AGCCCAGCTCCAGTATGAGTCTGTCGGCCACGAATTCAATGTACTGCTTCATTAAAGTGC 2591792 Query 16107 AGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAA 16166 ||||||| || || | || || || | || | ||| | || | | |||||| | | Sbjct 2591791 AGTTCATCCCGATGAGATTCACTGGCAAGGCCTTTGTGAGGAACTCCTGTTCTATCCTGA 2591732 Query 16167 CCGCTTCAATGATTATAT--CTCTTACTACACTATTTAACGGAGGGTTTAATAAG----T 16220 | || | | ||||||| |||| ||| | || | | || |||||| || | Sbjct 2591731 CAGCATTGACAATTATATTTCTCTGACT-CTCTGCT---CCGAAGGTTTATGTAGCAGAT 2591676 Query 16221 GTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGT 16280 |||| ||||||| ||| |||||||||||||| | ||| || || || || |||| ||| | Sbjct 2591675 GTTTGAACATTAAACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTCAT 2591616 Query 16281 TTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATG 16340 | |||||||||||||| ||||| ||||||||||| || | ||| ||||| | ||||| | Sbjct 2591615 TCGAAAATGTAAGACCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAG 2591556 Query 16341 AACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTC 16400 ||||||||||||| || ||||||||||| ||||| || || | | || || | || Sbjct 2591555 AACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAGGCTACTACACATTCTCCATGGGTGG 2591496 Query 16401 TAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGT 16460 | ||| | ||||| ||||||| ||| || | || ||||| ||| Sbjct 2591495 CTTCTTTGTCCCCAATCCAACACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTG 2591436 Query 16461 TCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTA 16520 |||| || || || || | | | | |||||| |||| || |||||||| || | Sbjct 2591435 TCTCAATAGCGTTGAAGAGGAATTCCCTCTCTTTGGAATCTTTAACGTAAGTATCGATGA 2591376 Query 16521 GTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATC 16580 | | ||| |||||||| || || || || ||||| || ||||| || ||||| || || | Sbjct 2591375 GGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGC 2591316 Query 16581 TAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTC 16640 ||||| | || || ||||| | ||||| || | |||||||| | ||||| | Sbjct 2591315 AGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCACTCACTATGC 2591256 Query 16641 CATCGCTAGCTGCAAAAAACGCAAG 16665 |||| || ||||| || || || || Sbjct 2591255 CATCACTGGCTGCGAAGAAAGCCAG 2591231 >seq602 Length=1640730 Score = 291 bits (322), Expect = 8e-74 Identities = 592/875 (68%), Gaps = 12/875 (1%) Strand=Plus/Plus Query 15927 TTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTC 15986 ||||||| || ||| | | ||| || | |||||||| |||||| || ||||| | Sbjct 122148 TTGACATCACGCCCATCCTCTAATACTCGCCTACTCTCTT---AAAGAAGTTAGTTTTGC 122204 Query 15987 CTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGC 16046 |||| |||||||| || |||||||| ||||| ||||| | | | | ||| | Sbjct 122205 CTTCCAATGAAATGTTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACTTTGCTGA 122264 Query 16047 ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC 16106 | |||| |||| | | ||| |||||||| ||||| | ||||| ||||||||| | Sbjct 122265 AGCCCAGCTCCAGTATAAGTCTGTCCGCCACGAATTCAGTGTACTGCTTCATTAAAGTGC 122324 Query 16107 AGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAA 16166 | ||||| || || | || | || | || ||||| | || | | |||||| | | Sbjct 122325 AATTCATCCCGATGAGATTTATTGGCAAGGCCTCTGTAAGGAACTCCTGTTCTATCCTGA 122384 Query 16167 CCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAG----TGT 16222 | || | | |||||| ||||| ||| | || | | || |||||| || ||| Sbjct 122385 CAGCATTGACGATTATTTCTCTGACT-CTCTGCT---CCGAAGGTTTATGTAGCAGATGT 122440 Query 16223 TTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTT 16282 || ||||||| ||| |||||||||||||| | ||| || || || || |||| | || Sbjct 122441 TTGAACATTA-ACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGTGCATTC 122499 Query 16283 GAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAA 16342 |||||||||||||| ||||| | ||||||||| || | ||| ||||| | ||||| ||| Sbjct 122500 GAAAATGTAAGACCAGGCATCAATCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAA 122559 Query 16343 CCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTA 16402 | ||||||||| || ||||| ||||| ||||| || || | | || || || || Sbjct 122560 CTAGAAAAGAAGATTCCTTCCACTGCTGCAAAGGCTACTACACATTCTCCATAGGTGGCT 122619 Query 16403 tttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTC 16462 | ||| | ||||| | ||||||| ||| || | || ||||| ||| || Sbjct 122620 TCTTTGTCCCCAATCCAATGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTC 122679 Query 16463 TCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGT 16522 || || || || || | | | | |||||| || | ||| |||||||| || || Sbjct 122680 TCAATAGCGTTGAAGAGGAATTCCCTCTCTTTGGAATGTTTAATGTAAGTATCGATGAGG 122739 Query 16523 AAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTA 16582 | ||| |||||||| || || || || ||||| || ||||| || ||||| || || | Sbjct 122740 AGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCAG 122799 Query 16583 GCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCA 16642 ||||| | || || ||||| | ||||| | | |||||||| || ||||||||| Sbjct 122800 GCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTTCACCAAGTTTTCATTCACTATTCCA 122859 Query 16643 TCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGT 16702 || || || || ||||| ||||| | || ||||||| | | || | | | || Sbjct 122860 TCACTGGCCGCGAAAAAAGCAAGCACATGGGATATAAAATATCTCTCCTCAGGTTTCAGG 122919 Query 16703 TTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCA 16762 ||||| | || || || | || ||||| || | |||||||| || || Sbjct 122920 GCCTCCCAGTGCTGGATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAATGAGGCC 122979 Query 16763 ACAGCCTTTTTATACATTTTCCATATGTCTTCGTA 16797 | ||||| |||||||| | ||| || || | ||| Sbjct 122980 TCGGCCTTCTTATACATCTGCCAGATATCATGGTA 123014 >seq418 Length=2079112 Score = 286 bits (316), Expect = 3e-72 Identities = 587/867 (68%), Gaps = 13/867 (1%) Strand=Plus/Plus Query 15947 TGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCC 16006 ||||| || | |||||||| |||||||| || ||||| ||||| |||||||| || ||| Sbjct 761087 TGATACTCCCCTACTCTCTTCTCAAAGAAGTTAGTTTTGCCTTCCAATGAAATGTTCTCC 761146 Query 16007 ATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATAAT 16066 ||||| ||||| ||||| | | | | || | | |||| |||| | | | Sbjct 761147 ATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTGAAGCCCAGCTCCAGTATAAGT 761206 Query 16067 CTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTA 16126 || |||||||||||||| || ||||| ||||||||| |||||||| || || | || Sbjct 761207 CTGTCCGCCACAAATTCAATGTACTGCTTCATTAAAGTGCAGTTCATCCCGATGAGATTC 761266 Query 16127 ACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCT 16186 || || | || ||||| | || | | |||||| | || || | | ||||| ||| Sbjct 761267 ACTGGCAAGGCCTCTGTGAGGAACTCCTGTTCTATCCTGACTGCATTGACAATTATTTCT 761326 Query 16187 CTTACTACACTATTTAACGGAGGGTTTAA-TA--AG-TGTTTAAACATTATACAAGCAAA 16242 || ||| | || | | | |||||| || || ||||| ||||||| ||| ||||| Sbjct 761327 CTGACT-CTCTGCTCCA---AAGGTTTATGTACCAGATGTTTGAACATTAAACACGCAAA 761382 Query 16243 ATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCAT 16302 ||||||||| | ||| || || || || |||| || || |||||||||||||| ||||| Sbjct 761383 ATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTTATTCGAAAATGTAAGACCAGGCAT 761442 Query 16303 TAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTC 16362 | ||||||||| |||| ||| ||||| | ||||| ||||||||| |||| || ||||| Sbjct 761443 CAATCCTCGTTTCTTAAGCCAGAATATGGATGCAAAAGAACCAGAATAGAAGATTCCTTC 761502 Query 16363 AACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattt 16422 ||||| ||| || | | | || || || || | ||| | ||||| Sbjct 761503 CACTGCTCTAAAGGCTCCTACATGTTCTCCATAGGTGGCTTCTTTGTCCCCAATCCAGCG 761562 Query 16423 tttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATA 16482 ||||||| ||| || | || ||||| ||| |||| || || || || | | Sbjct 761563 CAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGAAGAGGAA 761622 Query 16483 AtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATG 16542 | | |||||| ||| | |||||||| || || | ||| |||||||| || || Sbjct 761623 TTCCCTCTCTTTGGAATC-----TTTAAGTATCGATGAGGAGACTGTACATTTCAGAGTG 761677 Query 16543 AATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 || || ||||| || ||||| || ||||| || || || ||||| | || || ||||| Sbjct 761678 TATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCTGGCTTCTGTAATCTGAACTTC 761737 Query 16603 AGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGC 16662 | ||||| || | |||||||| || ||||| ||||| || || || || || || Sbjct 761738 TTGGCTAAACCGCTCCACAAAGTTTTCATTCACTATGCCATCACTGGCCGCGAAGAAAGC 761797 Query 16663 AAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATC 16722 || | || ||||||| | | || | | | || ||||| | || Sbjct 761798 CAGCACATGGGATATAAAATATCTCTCCTCAGGTTTCAGGGCCTCCCAGTGCTGGATGTC 761857 Query 16723 TTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTT 16782 || || | || ||||| || | ||||||| ||||| | || || |||||||| | Sbjct 761858 CTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAGTGAAGCCTCGGCTTTCTTATACATCTG 761917 Query 16783 CCATATGTCTTCGTAAACAATAGGAAA 16809 ||| || || | ||| | || ||||| Sbjct 761918 CCAAATATCATGGTATTCGATGGGAAA 761944 >seq446 Length=2046506 Score = 122 bits (134), Expect = 8e-23 Identities = 100/122 (82%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || |||| ||| ||||||||||||||||| ||||| ||||||||||| || Sbjct 492608 TCATCTCTGCTAATTAGCTCATTTGAAAATGTAAGACCAGGCATCAGTCCTCGTTTCTTG 492549 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| |||||||||||||| || ||||| ||||| ||||| || Sbjct 492548 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAGGCT 492489 Query 16379 AC 16380 || Sbjct 492488 AC 492487 >seq92 Length=5367877 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 16257 CTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTT 16316 |||| || || || || | ||| || ||||| || || || ||||| || |||| ||||| Sbjct 3850916 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTTTTTT 3850857 Query 16317 TAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATG 16376 | | |||||||||||| || || || || |||||||| || ||||| || || || || | Sbjct 3850856 TTAGCCAAAATATAGCAGCGAAAGATCCTGAAAAGAAAATTCCTTCTACAGCAGCGAAGG 3850797 Query 16377 CAACCA 16382 | |||| Sbjct 3850796 CTACCA 3850791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462478450535800