Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq23 1043 0.0 seq47 82.4 5e-11 >seq23 Length=8387762 Score = 1043 bits (1156), Expect = 0.0 Identities = 1094/1435 (76%), Gaps = 32/1435 (2%) Strand=Plus/Plus Query 107228 AGTTTGTAATTAAAGGCATTTTGTTCTGTCCAAGGATCTC---CTCCTCCACCTTG---- 107280 ||||||||| | ||||||||||||||||||||||||| | ||||||||||| | Sbjct 3564198 AGTTTGTAACTGAAGGCATTTTGTTCTGTCCAAGGATTCCACCCTCCTCCACCTCGTCTT 3564257 Query 107281 ---------CCTGTGCCCAAACTCT-CCTGA--TCTCC---CATCCCATG----AAGATG 107321 |||||| | |||| |||| ||||| | || || | |||| Sbjct 3564258 TCTCCTCCACCTGTGGCT---CTCTGCCTGGGTTCTCCTGACTGCCGGTGCCCCAGGATG 3564314 Query 107322 GCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTGCTATATG 107381 |||||||||||| | |||||| || | ||||||||| |||| ||||| || Sbjct 3564315 AACTGGTGGAAGAAGATG---TGCCGGCAGCACTACCTGTGGGCCTTGGGTTGCTACCTG 3564371 Query 107382 CTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGATTCCTTG 107441 |||||||| || ||| || | ||| || ||| ||| | |||||| | || ||| | Sbjct 3564372 CTGCTGGCTGTCGTTGTCCTCAAACTCTCTCTCCGGTCCAGATGTGACCTGGACTCCCCG 3564431 Query 107442 GATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACAATAGCCTG 107501 |||||||||||||||||| | ||||||| |||||| || |||| | ||| | ||| Sbjct 3564432 GATCTGGAGTCCAGGGACCTGCAGAGTCTGCACTGCAGAGACACCCTCTACCACTCTCTG 3564491 Query 107502 AAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCA 107561 |||||||| || ||||| |||||||||||||||| |||||||| ||||||| || || Sbjct 3564492 AAGCTGCCGGCCAAGAGCTCCATCAACTGTTCTGCCATCACGCGGGGGGACCCCGAGGCG 3564551 Query 107562 GTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGC 107621 ||| || ||||| |||||||||| ||||| |||||| ||| ||| | | | Sbjct 3564552 GTGAGAGGAGCTCTCCTGAACAACCTGGAGCACAAGAAGAAGCGGATGCCCCTCTCAGAC 3564611 Query 107622 ACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATA 107681 | | ||||||||| | ||| | ||||||| || ||||||| |||| |||| |||| | Sbjct 3564612 CCTGACTACCTCAACCTGACCCGGGACTGTGCGCACTTCAAGACCCAGAGGAGGTTCCTG 3564671 Query 107682 CAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCAT 107741 ||| | ||||| | | ||| | | ||||||| | |||||||| |||||||||||| Sbjct 3564672 ACCTTCTCCCTGAGCAGGGCCGAGTTGGCCTTCCCCCTCGCCTACTCCATGGTGGTCCAT 3564731 Query 107742 GAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATAC 107801 |||||| | || ||||| || ||||||||||| || ||||||||||| |||||||| ||| Sbjct 3564732 GAGAAGGTCGAGAACTTCGAGCGGCTGCTGCGGGCTGTGTATGCCCCCCAGAACATCTAC 3564791 Query 107802 TGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATT 107861 || || |||||||| ||||||||| || | ||||| || |||||||||| ||| || Sbjct 3564792 TGCGTGCACGTGGACCAGAAGTCCCCCGACTCCTTCAAGGACGCGGTCAAGGGCATCATC 3564851 Query 107862 TCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGG 107921 ||||||||||||||||||||| |||||||||||||||| | |||||| |||||||||||| Sbjct 3564852 TCCTGCTTCCCCAATGTCTTCCTGGCCAGTAAGTTGGTGCGGGTGGTGTATGCCTCCTGG 3564911 Query 107922 TCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGG 107981 ||| | |||||||| ||||| ||||| ||||| ||| | |||| |||| | || || ||| Sbjct 3564912 TCCCGGGTGCAAGCAGACCTCAACTGCATGGAGGACCTTCTCCGGAGCCCGGTCCCCTGG 3564971 Query 107982 AAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTC 108041 |||||||| || || || |||||||| |||||||||| |||||||| ||||||||||| Sbjct 3564972 AAGTACTTCCTCAACACCTGCGGGACCGACTTCCCCACCAAGACCAACGCCGAGATGGTG 3565031 Query 108042 CTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCC 108101 |||||||||| | || |||| || |||||||| |||||||| ||||| || | |||| | Sbjct 3565032 CTGGCCCTCAGGTTGCTGAATGGGAAGAACAGCATGGAGTCAGAGGTGCCCACCGAGTAC 3565091 Query 108102 aaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAG 108161 || | ||||||||||||| ||| |||||||||||||| || | ||| |||| Sbjct 3565092 AAGAGGTCCCGCTGGAAATACCACTACGAGGTGACAGACACTGTGCGCGGCACCGACAAG 3565151 Query 108162 ATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCC 108221 | |||||||||||||| || || | | |||||| || |||||||| |||||| Sbjct 3565152 CTCAAGGACCCTCCCCCAGAAAACCTCCAAATGTTCGTTGGCAATGCCTACATTGTGGTG 3565211 Query 108222 TCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGG 108281 || | ||||| ||||| || || | || ||||| | |||||| | | | || ||| Sbjct 3565212 TCCAGGGCCTTCGTCCAGCAGGTGCTGGAGAACCCCAGATCCCAGCGGTTCATCGAGTGG 3565271 Query 108282 GTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGG 108341 ||||| |||||||| ||||| ||||| ||||| ||||| ||||| ||| | ||||| ||| Sbjct 3565272 GTCAAGGACACCTACAGCCCTGACGAGCACCTGTGGGCTACCCTGCAGAGGGCTCCCTGG 3565331 Query 108342 ATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCC 108401 ||||||||||||| || |||||||||| |||| ||||||||||| ||||| ||| Sbjct 3565332 ATGCCTGGCTCTGACCCCTATCACCCCAAGTTCCACAACTCAGACATGAACGCCATTGCC 3565391 Query 108402 AGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCC 108461 ||||| |||||||||||| ||||||||| || ||||| |||||| || |||| |||| Sbjct 3565392 AGGCTGGTCAAGTGGCAGGGCCACGAGGGGGACATCAGCCAGGGGGCACCCTATGGACCC 3565451 Query 108462 TGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATT 108521 || || || ||| | | ||| | ||||||| ||||||| || |||||| ||||||| Sbjct 3565452 TGTTCGGGGGCCCACCAGCGGGGCGTCTGCATCTACGGGGTGGGTGACCTGCACTGGATG 3565511 Query 108522 CTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTG 108581 || |||| ||||||||| |||| |||||||||||||| | |||||| || || | | | Sbjct 3565512 CTGCAGACCCATCACCTGCTGGCCAACAAGTTTGACCCCAAGGTGGACGACAATGCCATT 3565571 Query 108582 CAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGAG 108636 |||||| | || |||||| |||| || |||||||||||||||| || || |||| Sbjct 3565572 CAGTGCCTCGAGGAGTACTTACGCCACAAGGCCATCTATGGGAAGGAGCTCTGAG 3565626 >seq47 Length=7047778 Score = 82.4 bits (90), Expect = 5e-11 Identities = 192/286 (67%), Gaps = 8/286 (3%) Strand=Plus/Minus Query 108276 GAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCT 108335 || ||| ||||||||| || ||||| || || | |||||||||||| ||||| | | | Sbjct 6982582 GAGTGGACCAAAGACACATACAGCCCAGATGAGTATCTCTGGGCCACCATTCAGAG-GAT 6982524 Query 108336 CCGTGGA-TGCCTGGCTCTGTTCC---TAGCCACCCCAAGTATCACATCTCAGACATGAC 108391 || ||| | || ||||| | || ||| | |||||| | || || |||||| Sbjct 6982523 CCCCGGAGTCCCAGGCTCACTGCCCTTAAGCTA---TAAGTATGATATGTCTGACATGCG 6982467 Query 108392 TGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCC 108451 ||| || || ||| | || |||||||||||| || || |||| || ||| || || Sbjct 6982466 TGCTATTGCTAGGTTTGTGAAGTGGCAGTACTTTGAAGGCAATGTTTCCAAGGGTGCTCC 6982407 Query 108452 TTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCT 108511 || | || ||| ||| | | | | | || | || | | || ||||| ||| | Sbjct 6982406 ATACCCGCCTTGCAATGGGGTTTACCTGCGCTCCGTGTGTGTGTTTGGAGCCGGAGACTT 6982347 Query 108512 GTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 | ||||||| || | | || ||| | || || || ||||||||| Sbjct 6982346 GAACTGGATGCTGCGCATGCACCACTTATTTGCCAATAAGTTTGAC 6982301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348244169015622