Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq23 1043 0.0
seq47 82.4 5e-11
>seq23
Length=8387762
Score = 1043 bits (1156), Expect = 0.0
Identities = 1094/1435 (76%), Gaps = 32/1435 (2%)
Strand=Plus/Plus
Query 107228 AGTTTGTAATTAAAGGCATTTTGTTCTGTCCAAGGATCTC---CTCCTCCACCTTG---- 107280
||||||||| | ||||||||||||||||||||||||| | ||||||||||| |
Sbjct 3564198 AGTTTGTAACTGAAGGCATTTTGTTCTGTCCAAGGATTCCACCCTCCTCCACCTCGTCTT 3564257
Query 107281 ---------CCTGTGCCCAAACTCT-CCTGA--TCTCC---CATCCCATG----AAGATG 107321
|||||| | |||| |||| ||||| | || || | ||||
Sbjct 3564258 TCTCCTCCACCTGTGGCT---CTCTGCCTGGGTTCTCCTGACTGCCGGTGCCCCAGGATG 3564314
Query 107322 GCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTGCTATATG 107381
|||||||||||| | |||||| || | ||||||||| |||| ||||| ||
Sbjct 3564315 AACTGGTGGAAGAAGATG---TGCCGGCAGCACTACCTGTGGGCCTTGGGTTGCTACCTG 3564371
Query 107382 CTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGATTCCTTG 107441
|||||||| || ||| || | ||| || ||| ||| | |||||| | || ||| |
Sbjct 3564372 CTGCTGGCTGTCGTTGTCCTCAAACTCTCTCTCCGGTCCAGATGTGACCTGGACTCCCCG 3564431
Query 107442 GATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACAATAGCCTG 107501
|||||||||||||||||| | ||||||| |||||| || |||| | ||| | |||
Sbjct 3564432 GATCTGGAGTCCAGGGACCTGCAGAGTCTGCACTGCAGAGACACCCTCTACCACTCTCTG 3564491
Query 107502 AAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCA 107561
|||||||| || ||||| |||||||||||||||| |||||||| ||||||| || ||
Sbjct 3564492 AAGCTGCCGGCCAAGAGCTCCATCAACTGTTCTGCCATCACGCGGGGGGACCCCGAGGCG 3564551
Query 107562 GTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGC 107621
||| || ||||| |||||||||| ||||| |||||| ||| ||| | | |
Sbjct 3564552 GTGAGAGGAGCTCTCCTGAACAACCTGGAGCACAAGAAGAAGCGGATGCCCCTCTCAGAC 3564611
Query 107622 ACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATA 107681
| | ||||||||| | ||| | ||||||| || ||||||| |||| |||| |||| |
Sbjct 3564612 CCTGACTACCTCAACCTGACCCGGGACTGTGCGCACTTCAAGACCCAGAGGAGGTTCCTG 3564671
Query 107682 CAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCAT 107741
||| | ||||| | | ||| | | ||||||| | |||||||| ||||||||||||
Sbjct 3564672 ACCTTCTCCCTGAGCAGGGCCGAGTTGGCCTTCCCCCTCGCCTACTCCATGGTGGTCCAT 3564731
Query 107742 GAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATAC 107801
|||||| | || ||||| || ||||||||||| || ||||||||||| |||||||| |||
Sbjct 3564732 GAGAAGGTCGAGAACTTCGAGCGGCTGCTGCGGGCTGTGTATGCCCCCCAGAACATCTAC 3564791
Query 107802 TGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATT 107861
|| || |||||||| ||||||||| || | ||||| || |||||||||| ||| ||
Sbjct 3564792 TGCGTGCACGTGGACCAGAAGTCCCCCGACTCCTTCAAGGACGCGGTCAAGGGCATCATC 3564851
Query 107862 TCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGG 107921
||||||||||||||||||||| |||||||||||||||| | |||||| ||||||||||||
Sbjct 3564852 TCCTGCTTCCCCAATGTCTTCCTGGCCAGTAAGTTGGTGCGGGTGGTGTATGCCTCCTGG 3564911
Query 107922 TCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGG 107981
||| | |||||||| ||||| ||||| ||||| ||| | |||| |||| | || || |||
Sbjct 3564912 TCCCGGGTGCAAGCAGACCTCAACTGCATGGAGGACCTTCTCCGGAGCCCGGTCCCCTGG 3564971
Query 107982 AAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTC 108041
|||||||| || || || |||||||| |||||||||| |||||||| |||||||||||
Sbjct 3564972 AAGTACTTCCTCAACACCTGCGGGACCGACTTCCCCACCAAGACCAACGCCGAGATGGTG 3565031
Query 108042 CTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCC 108101
|||||||||| | || |||| || |||||||| |||||||| ||||| || | |||| |
Sbjct 3565032 CTGGCCCTCAGGTTGCTGAATGGGAAGAACAGCATGGAGTCAGAGGTGCCCACCGAGTAC 3565091
Query 108102 aaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAG 108161
|| | ||||||||||||| ||| |||||||||||||| || | ||| ||||
Sbjct 3565092 AAGAGGTCCCGCTGGAAATACCACTACGAGGTGACAGACACTGTGCGCGGCACCGACAAG 3565151
Query 108162 ATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCC 108221
| |||||||||||||| || || | | |||||| || |||||||| ||||||
Sbjct 3565152 CTCAAGGACCCTCCCCCAGAAAACCTCCAAATGTTCGTTGGCAATGCCTACATTGTGGTG 3565211
Query 108222 TCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGG 108281
|| | ||||| ||||| || || | || ||||| | |||||| | | | || |||
Sbjct 3565212 TCCAGGGCCTTCGTCCAGCAGGTGCTGGAGAACCCCAGATCCCAGCGGTTCATCGAGTGG 3565271
Query 108282 GTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGG 108341
||||| |||||||| ||||| ||||| ||||| ||||| ||||| ||| | ||||| |||
Sbjct 3565272 GTCAAGGACACCTACAGCCCTGACGAGCACCTGTGGGCTACCCTGCAGAGGGCTCCCTGG 3565331
Query 108342 ATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCC 108401
||||||||||||| || |||||||||| |||| ||||||||||| ||||| |||
Sbjct 3565332 ATGCCTGGCTCTGACCCCTATCACCCCAAGTTCCACAACTCAGACATGAACGCCATTGCC 3565391
Query 108402 AGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCC 108461
||||| |||||||||||| ||||||||| || ||||| |||||| || |||| ||||
Sbjct 3565392 AGGCTGGTCAAGTGGCAGGGCCACGAGGGGGACATCAGCCAGGGGGCACCCTATGGACCC 3565451
Query 108462 TGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATT 108521
|| || || ||| | | ||| | ||||||| ||||||| || |||||| |||||||
Sbjct 3565452 TGTTCGGGGGCCCACCAGCGGGGCGTCTGCATCTACGGGGTGGGTGACCTGCACTGGATG 3565511
Query 108522 CTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTG 108581
|| |||| ||||||||| |||| |||||||||||||| | |||||| || || | | |
Sbjct 3565512 CTGCAGACCCATCACCTGCTGGCCAACAAGTTTGACCCCAAGGTGGACGACAATGCCATT 3565571
Query 108582 CAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGAG 108636
|||||| | || |||||| |||| || |||||||||||||||| || || ||||
Sbjct 3565572 CAGTGCCTCGAGGAGTACTTACGCCACAAGGCCATCTATGGGAAGGAGCTCTGAG 3565626
>seq47
Length=7047778
Score = 82.4 bits (90), Expect = 5e-11
Identities = 192/286 (67%), Gaps = 8/286 (3%)
Strand=Plus/Minus
Query 108276 GAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCT 108335
|| ||| ||||||||| || ||||| || || | |||||||||||| ||||| | | |
Sbjct 6982582 GAGTGGACCAAAGACACATACAGCCCAGATGAGTATCTCTGGGCCACCATTCAGAG-GAT 6982524
Query 108336 CCGTGGA-TGCCTGGCTCTGTTCC---TAGCCACCCCAAGTATCACATCTCAGACATGAC 108391
|| ||| | || ||||| | || ||| | |||||| | || || ||||||
Sbjct 6982523 CCCCGGAGTCCCAGGCTCACTGCCCTTAAGCTA---TAAGTATGATATGTCTGACATGCG 6982467
Query 108392 TGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCC 108451
||| || || ||| | || |||||||||||| || || |||| || ||| || ||
Sbjct 6982466 TGCTATTGCTAGGTTTGTGAAGTGGCAGTACTTTGAAGGCAATGTTTCCAAGGGTGCTCC 6982407
Query 108452 TTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCT 108511
|| | || ||| ||| | | | | | || | || | | || ||||| ||| |
Sbjct 6982406 ATACCCGCCTTGCAATGGGGTTTACCTGCGCTCCGTGTGTGTGTTTGGAGCCGGAGACTT 6982347
Query 108512 GTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557
| ||||||| || | | || ||| | || || || |||||||||
Sbjct 6982346 GAACTGGATGCTGCGCATGCACCACTTATTTGCCAATAAGTTTGAC 6982301
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 348244169015622
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |