Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq30 333 3e-86 seq602 331 9e-86 seq418 306 4e-78 seq446 120 3e-22 seq34 93.3 4e-14 seq956 86.0 6e-12 >seq30 Length=8517879 Score = 333 bits (368), Expect = 3e-86 Identities = 619/899 (69%), Gaps = 15/899 (2%) Strand=Plus/Minus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || ||||| | ||||| || | | ||| || | ||||||||||||||| ||| Sbjct 2591969 GACATCACACCCATCCTCTGATACTCGCCTAGTCTCTTCTTAAAGAAGTTAGTTTTGCCT 2591910 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATT-TGTTGACATAAACACTTTATCACA 14016 |||| ||| || || |||||||| ||||||||||| | | | ||| ||| | | | Sbjct 2591909 TCCAATGAAATGTTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTGA-A 2591851 Query 14017 ACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACA 14076 || || || | || | ||| || || | ||| ||||| || || ||||||| || Sbjct 2591850 GCCCAGCTCCAGTATGAGTCTGTCGGCCACGAATTCAATGTACTGCTTCATTAAAGTGCA 2591791 Query 14077 ATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACAC 14136 ||||| || || || || || || | || || | || || | |||||| || Sbjct 2591790 GTTCATCCCGATGAGATTCACTGGCAAGGCCTTTGTGAGGAACTCCTGTTCTATCCTGAC 2591731 Query 14137 AGCCTCGTTTATAATAATCGTAATAATTTCA--TTAGAAGGAGGATATTTTAGATGTTTA 14194 ||| | | || ||| | | | | || | ||||| || | |||||||| Sbjct 2591730 AGCATTGACAATTATATTTCTCTGACTCTCTGCTCCGAAGGTTTATGTAGCAGATGTTTG 2591671 Query 14195 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 14254 || ||||||||||||||||||||||| || ||||||||||| ||||| || || || ||| Sbjct 2591670 AACATTAAACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTCATTCGAA 2591611 Query 14255 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCG 14314 ||||| | || ||||||| ||||||||| || | ||| ||||| | || || || || Sbjct 2591610 AATGTAAGACCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCA 2591551 Query 14315 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTT 14374 |||||||| ||||| |||||||| ||||| |||| || | ||||||| | |||| | Sbjct 2591550 GAAAAGAAGATTCCTTCAACTGCTGCAAAGGCTACTACACATTCTCCATGGGTGGCTTCT 2591491 Query 14375 TTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCA 14434 |||| | ||||| ||||| || | || || || | | || |||||| ||| Sbjct 2591490 TTGTCCCCAATCCAACACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCA 2591431 Query 14435 ATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAG 14494 ||||| || || | |||| ||||||| | | | || ||| ||||| || || | Sbjct 2591430 ATAGCGTTGAAGAGGAATTCCCTCTCTTTGGAATCTTTAACGTAAGTATCGATGAGGAGA 2591371 Query 14495 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCT 14554 || |||||||||||||||||||||||||| || ||||| || ||||| ||||| | ||| Sbjct 2591370 CTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCAGGCT 2591311 Query 14555 TCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14614 |||| || || ||| | ||| | || |||| |||||| | ||||| |||||| Sbjct 2591310 TCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCACTCACTATGCCATCA 2591251 Query 14615 CTAGCTGCAAAAAATGCCA--ATATGTTTTTAATAAAGTATTGCTCTTCA--TTGCTGAG 14670 || ||||| || || |||| | ||| | ||||| ||| ||| ||| || | | | Sbjct 2591250 CTGGCTGCGAAGAAAGCCAGGACATGGGAT--ATAAAATATCTCTCCTCAGGTTTCAG-G 2591194 Query 14671 TTTTTTCCAATCGGCT--AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTA 14728 | ||| | ||| | ||| | ||||| || || || ||| |||||||||| Sbjct 2591193 GGCCTCCCAGT--GCTGGATGTCCCTGGAAAGGTCCACCTCCTCAGCTGTCCAAAATGAG 2591136 Query 14729 GCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14787 || | || || |||||||| ||| || || | ||| || ||||| | ||||| Sbjct 2591135 GCCTCGGCCTTCTTATACATCTGCCAGATATCATGGTATTCGATGGGAAAGATGACAAA 2591077 >seq602 Length=1640730 Score = 331 bits (366), Expect = 9e-86 Identities = 617/897 (69%), Gaps = 18/897 (2%) Strand=Plus/Plus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || |||||||| | | ||| || | ||||| || ||||||||||||||| ||| Sbjct 122150 GACATCACGCCCATCCTCTAATACTCGCCTACTCTCTT---AAAGAAGTTAGTTTTGCCT 122206 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAA 14017 |||| ||| || || |||||||| ||||||||||| | | || ||||| | Sbjct 122207 TCCAATGAAATGTTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACTTTGCTGAAG 122266 Query 14018 CCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAA 14077 || || || | || | ||| ||||| | ||| ||| | || || ||||||| ||| Sbjct 122267 CCCAGCTCCAGTATAAGTCTGTCCGCCACGAATTCAGTGTACTGCTTCATTAAAGTGCAA 122326 Query 14078 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 14137 ||||| || || || |||| || | | || | || || | |||||| ||| Sbjct 122327 TTCATCCCGATGAGATTTATTGGCAAGGCCTCTGTAAGGAACTCCTGTTCTATCCTGACA 122386 Query 14138 GCCT---CGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTA 14194 || | || |||| | || | | | | | ||||| || | |||||||| Sbjct 122387 GCATTGACGATTAT--TTCTCTGACTCTCTGC-TCCGAAGGTTTATGTAGCAGATGTTTG 122443 Query 14195 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 14254 || ||||| ||||||||||||||||| || ||||||||||| ||||| ||| | || ||| Sbjct 122444 AACATTAA-CACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGTGCATTCGAA 122502 Query 14255 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCG 14314 ||||| | || ||||||||||||||||| || | ||| ||||| | || || || | Sbjct 122503 AATGTAAGACCAGGCATCAATCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACTA 122562 Query 14315 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTT 14374 |||||||| ||||| || ||||| ||||| |||| || | ||||||| | | |||| | Sbjct 122563 GAAAAGAAGATTCCTTCCACTGCTGCAAAGGCTACTACACATTCTCCATAGGTGGCTTCT 122622 Query 14375 TTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCA 14434 |||| | ||||| | ||||| || | || || || | | || |||||| ||| Sbjct 122623 TTGTCCCCAATCCAATGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCA 122682 Query 14435 ATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAG 14494 ||||| || || | |||| ||||||| | | | |||||| ||||| || || | Sbjct 122683 ATAGCGTTGAAGAGGAATTCCCTCTCTTTGGAATGTTTAATGTAAGTATCGATGAGGAGA 122742 Query 14495 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCT 14554 || |||||||||||||||||||||||||| || ||||| || ||||| ||||| | ||| Sbjct 122743 CTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCAGGCT 122802 Query 14555 TCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14614 |||| || || ||| | ||| | | |||| |||||||| ||||| |||||| Sbjct 122803 TCTGTAATCTGAACTTCTTGGCTAAACCGCTTCACCAAGTTTTCATTCACTATTCCATCA 122862 Query 14615 CTAGCTGCAAAAAATGCCA--ATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTT 14672 || || || ||||| || | | ||| | ||||| ||| ||| ||| | || Sbjct 122863 CTGGCCGCGAAAAAAGCAAGCACATGGGAT--ATAAAATATCTCTCCTCAGGTTTCAGGG 122920 Query 14673 TTTTCCAATCGGCT--AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGC 14730 | ||| | ||| | ||||| ||||| || || || ||| |||||||||| || Sbjct 122921 CCTCCCAGT--GCTGGATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAATGAGGC 122978 Query 14731 AACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14787 | || || |||||||| ||| || || | ||| || ||||| | ||||| Sbjct 122979 CTCGGCCTTCTTATACATCTGCCAGATATCATGGTATTTGATGGGAAAGATGACAAA 123035 >seq418 Length=2079112 Score = 306 bits (338), Expect = 4e-78 Identities = 610/896 (68%), Gaps = 17/896 (2%) Strand=Plus/Plus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || | |||||| | ||||| || | ||||| || ||||||||||||||||| ||| Sbjct 761069 GACATCATGCCCATCCTCTGATACTCCCCTACTCTCTTCTCAAAGAAGTTAGTTTTGCCT 761128 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATT-TGTTGACATAAACACTTTATCACA 14016 |||| ||| || || |||||||| ||||||||||| | | | ||| ||| | | | Sbjct 761129 TCCAATGAAATGTTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTGA-A 761187 Query 14017 ACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACA 14076 || || || | || | ||| ||||| | || ||||| || || ||||||| || Sbjct 761188 GCCCAGCTCCAGTATAAGTCTGTCCGCCACAAATTCAATGTACTGCTTCATTAAAGTGCA 761247 Query 14077 ATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACAC 14136 ||||| || || || || || || | | || | || || | |||||| || Sbjct 761248 GTTCATCCCGATGAGATTCACTGGCAAGGCCTCTGTGAGGAACTCCTGTTCTATCCTGAC 761307 Query 14137 AGCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAA 14196 || | | || || | | | | | |||| || | |||||||| || Sbjct 761308 TGCATTGACAATTATTTCTCTGACTCTCTGCTCCAAAGGTTTATGTACCAGATGTTTGAA 761367 Query 14197 AATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAA 14256 ||||||||||||||||||||||| || ||||||||||| ||||| || | || ||||| Sbjct 761368 CATTAAACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTTATTCGAAAA 761427 Query 14257 TGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGA 14316 ||| | || ||||||||||||||||| || | ||| ||||| | || || || || || Sbjct 761428 TGTAAGACCAGGCATCAATCCTCGTTTCTTAAGCCAGAATATGGATGCAAAAGAACCAGA 761487 Query 14317 AAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTT 14376 | |||| ||||| || ||||| ||| ||| || |||||||| | | |||| ||| Sbjct 761488 ATAGAAGATTCCTTCCACTGCTCTAAAGGCTCCTACATGTTCTCCATAGGTGGCTTCTTT 761547 Query 14377 GTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAAT 14436 || | ||||| ||||| || | || || || | | || |||||| ||||| Sbjct 761548 GTCCCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAAT 761607 Query 14437 AGCATTAAATAAATGTTCCTTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAGC 14495 ||| || || | |||| ||||||| | | ||| || ||||| || || | | Sbjct 761608 AGCGTTGAAGAGGAATTCCCTCTCTTTGGAATCTT------TAAGTATCGATGAGGAGAC 761661 Query 14496 TATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTT 14555 | |||||||||||||||||||||||||| || ||||| || ||||| ||||| || |||| Sbjct 761662 TGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCTGGCTT 761721 Query 14556 CTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCAC 14615 ||| || || ||| | ||| | || | || |||||||| ||||| ||||||| Sbjct 761722 CTGTAATCTGAACTTCTTGGCTAAACCGCTCCACAAAGTTTTCATTCACTATGCCATCAC 761781 Query 14616 TAGCTGCAAAAAATGCCA--ATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTT 14673 | || || || || |||| | ||| | ||||| ||| ||| ||| | || Sbjct 761782 TGGCCGCGAAGAAAGCCAGCACATGGGAT--ATAAAATATCTCTCCTCAGGTTTCAGGGC 761839 Query 14674 TTTCCAATCGGCT--AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCA 14731 | ||| | ||| | ||||| ||||| || || || ||| ||||||||| ||| Sbjct 761840 CTCCCAGT--GCTGGATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAGTGAAGCC 761897 Query 14732 ACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14787 | ||||| |||||||| ||| || || | ||| || ||||| | ||||| Sbjct 761898 TCGGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATGGGAAAGATGACAAA 761953 >seq446 Length=2046506 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| ||||| || || ||||||||||| | || ||||||| ||||||||| | Sbjct 492610 CCTCATCTCTGCTAATTAGCTCATTTGAAAATGTAAGACCAGGCATCAGTCCTCGTTTCT 492551 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||| | || || || || |||||||| ||||| || ||||| ||||| | Sbjct 492550 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAGG 492491 Query 14346 CTATTAATCGTTCTCC 14361 ||| || |||||||| Sbjct 492490 CTACTACACGTTCTCC 492475 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || |||||||| | ||||| || | ||||| || ||||||||||||||||| ||| Sbjct 493894 GACATCACGCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTTTTGCCT 493835 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATT 13992 |||| ||| || || |||||||| ||||||||||| Sbjct 493834 TCCAATGAAATGTTCTCCATAAAGTCAAATGGATT 493800 Score = 89.7 bits (98), Expect = 5e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 14457 TCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 14516 ||||||| | | | |||||| ||||| || || | || ||||||||||||||||||| Sbjct 489528 TCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAGTGTATGT 489469 Query 14517 TTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14558 ||||||| || ||||| || ||||| ||||| | ||||||| Sbjct 489468 TTTCCATGGCAATCTGGAAGCCATAGAAACAGCGGGCTTCTG 489427 >seq34 Length=7729394 Score = 93.3 bits (102), Expect = 4e-14 Identities = 240/364 (66%), Gaps = 39/364 (11%) Strand=Plus/Minus Query 14186 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 14245 |||||||| || || ||| | ||||| | |||||| || ||||||||||| || Sbjct 4966371 AGATGTTTGAACATCAAATATGCAAAGTGACAATGGAGTCCCTCATCTCT--------GT 4966320 Query 14246 TCGTTTGAAAA-TGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC 14304 || || ||||| ||| | || | |||||||| || ||| || || | ||||| | || Sbjct 4966319 TCATTGGAAAAATGTAAGACCAGACATCAATCTTCATTTCTTGAATGAGAATATGGATGC 4966260 Query 14305 GAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAA 14364 || || || | ||||||||||| || | || ||||| |||| || ||||||| Sbjct 4966259 AAAAGAACCAGGAAAGAATATTCTTTCCATAGCTGCAAAAGCTACTACATATTCTCCA-- 4966202 Query 14365 CGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATC 14424 ||||| | | ||| | ||||| || | ||| ||| ||| || Sbjct 4966201 ------TTTTTGGCCCCCAATCAAACACAAGGCCCAGTCTGCTTTCTTT---ATACAAGA 4966151 Query 14425 CATTGTTTCAATAGCATT--AAATAAATGTTCCTTCTCTTTAGTA-CTTGAAATGTATGT 14481 |||||| ||||||| || || ||||| | ||||||| | | ||| ||| | Sbjct 4966150 CATTGTCTCAATAGTGTTGAAAGGGAATGT--CCTCTCTTTGGAATCTTTAAA------T 4966099 Query 14482 ATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATA 14541 || || || | |||| |||||||| ||| ||||||||| || |||||||| Sbjct 4966098 ATTGATGAGGAGATTATATATTTCAGAATGTTTGTTTTCCA--------TGGAAACCATA 4966047 Query 14542 AAAA 14545 |||| Sbjct 4966046 AAAA 4966043 >seq956 Length=748348 Score = 86.0 bits (94), Expect = 6e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || ||| |||| | ||| | || | ||||| || ||||||||||||||||| ||| Sbjct 286099 GACATCACGGCCATCCTCTGAAACTCGCCTACTCTCTTCTCAAAGAAGTTAGTTTTGCCT 286158 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATT 13992 |||| ||| || || |||||||| ||||||||||| Sbjct 286159 TCCAATGAAATGTTCTCCATAAAGTCAAATGGATT 286193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482310611856040