Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq30 333 3e-86
seq602 331 9e-86
seq418 306 4e-78
seq446 120 3e-22
seq34 93.3 4e-14
seq956 86.0 6e-12
>seq30
Length=8517879
Score = 333 bits (368), Expect = 3e-86
Identities = 619/899 (69%), Gaps = 15/899 (2%)
Strand=Plus/Minus
Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957
|| || || ||||| | ||||| || | | ||| || | ||||||||||||||| |||
Sbjct 2591969 GACATCACACCCATCCTCTGATACTCGCCTAGTCTCTTCTTAAAGAAGTTAGTTTTGCCT 2591910
Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATT-TGTTGACATAAACACTTTATCACA 14016
|||| ||| || || |||||||| ||||||||||| | | | ||| ||| | | |
Sbjct 2591909 TCCAATGAAATGTTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTGA-A 2591851
Query 14017 ACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACA 14076
|| || || | || | ||| || || | ||| ||||| || || ||||||| ||
Sbjct 2591850 GCCCAGCTCCAGTATGAGTCTGTCGGCCACGAATTCAATGTACTGCTTCATTAAAGTGCA 2591791
Query 14077 ATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACAC 14136
||||| || || || || || || | || || | || || | |||||| ||
Sbjct 2591790 GTTCATCCCGATGAGATTCACTGGCAAGGCCTTTGTGAGGAACTCCTGTTCTATCCTGAC 2591731
Query 14137 AGCCTCGTTTATAATAATCGTAATAATTTCA--TTAGAAGGAGGATATTTTAGATGTTTA 14194
||| | | || ||| | | | | || | ||||| || | ||||||||
Sbjct 2591730 AGCATTGACAATTATATTTCTCTGACTCTCTGCTCCGAAGGTTTATGTAGCAGATGTTTG 2591671
Query 14195 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 14254
|| ||||||||||||||||||||||| || ||||||||||| ||||| || || || |||
Sbjct 2591670 AACATTAAACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTCATTCGAA 2591611
Query 14255 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCG 14314
||||| | || ||||||| ||||||||| || | ||| ||||| | || || || ||
Sbjct 2591610 AATGTAAGACCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCA 2591551
Query 14315 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTT 14374
|||||||| ||||| |||||||| ||||| |||| || | ||||||| | |||| |
Sbjct 2591550 GAAAAGAAGATTCCTTCAACTGCTGCAAAGGCTACTACACATTCTCCATGGGTGGCTTCT 2591491
Query 14375 TTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCA 14434
|||| | ||||| ||||| || | || || || | | || |||||| |||
Sbjct 2591490 TTGTCCCCAATCCAACACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCA 2591431
Query 14435 ATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAG 14494
||||| || || | |||| ||||||| | | | || ||| ||||| || || |
Sbjct 2591430 ATAGCGTTGAAGAGGAATTCCCTCTCTTTGGAATCTTTAACGTAAGTATCGATGAGGAGA 2591371
Query 14495 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCT 14554
|| |||||||||||||||||||||||||| || ||||| || ||||| ||||| | |||
Sbjct 2591370 CTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCAGGCT 2591311
Query 14555 TCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14614
|||| || || ||| | ||| | || |||| |||||| | ||||| ||||||
Sbjct 2591310 TCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCACTCACTATGCCATCA 2591251
Query 14615 CTAGCTGCAAAAAATGCCA--ATATGTTTTTAATAAAGTATTGCTCTTCA--TTGCTGAG 14670
|| ||||| || || |||| | ||| | ||||| ||| ||| ||| || | | |
Sbjct 2591250 CTGGCTGCGAAGAAAGCCAGGACATGGGAT--ATAAAATATCTCTCCTCAGGTTTCAG-G 2591194
Query 14671 TTTTTTCCAATCGGCT--AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTA 14728
| ||| | ||| | ||| | ||||| || || || ||| ||||||||||
Sbjct 2591193 GGCCTCCCAGT--GCTGGATGTCCCTGGAAAGGTCCACCTCCTCAGCTGTCCAAAATGAG 2591136
Query 14729 GCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14787
|| | || || |||||||| ||| || || | ||| || ||||| | |||||
Sbjct 2591135 GCCTCGGCCTTCTTATACATCTGCCAGATATCATGGTATTCGATGGGAAAGATGACAAA 2591077
>seq602
Length=1640730
Score = 331 bits (366), Expect = 9e-86
Identities = 617/897 (69%), Gaps = 18/897 (2%)
Strand=Plus/Plus
Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957
|| || |||||||| | | ||| || | ||||| || ||||||||||||||| |||
Sbjct 122150 GACATCACGCCCATCCTCTAATACTCGCCTACTCTCTT---AAAGAAGTTAGTTTTGCCT 122206
Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAA 14017
|||| ||| || || |||||||| ||||||||||| | | || ||||| |
Sbjct 122207 TCCAATGAAATGTTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACTTTGCTGAAG 122266
Query 14018 CCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAA 14077
|| || || | || | ||| ||||| | ||| ||| | || || ||||||| |||
Sbjct 122267 CCCAGCTCCAGTATAAGTCTGTCCGCCACGAATTCAGTGTACTGCTTCATTAAAGTGCAA 122326
Query 14078 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 14137
||||| || || || |||| || | | || | || || | |||||| |||
Sbjct 122327 TTCATCCCGATGAGATTTATTGGCAAGGCCTCTGTAAGGAACTCCTGTTCTATCCTGACA 122386
Query 14138 GCCT---CGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTA 14194
|| | || |||| | || | | | | | ||||| || | ||||||||
Sbjct 122387 GCATTGACGATTAT--TTCTCTGACTCTCTGC-TCCGAAGGTTTATGTAGCAGATGTTTG 122443
Query 14195 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 14254
|| ||||| ||||||||||||||||| || ||||||||||| ||||| ||| | || |||
Sbjct 122444 AACATTAA-CACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGTGCATTCGAA 122502
Query 14255 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCG 14314
||||| | || ||||||||||||||||| || | ||| ||||| | || || || |
Sbjct 122503 AATGTAAGACCAGGCATCAATCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACTA 122562
Query 14315 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTT 14374
|||||||| ||||| || ||||| ||||| |||| || | ||||||| | | |||| |
Sbjct 122563 GAAAAGAAGATTCCTTCCACTGCTGCAAAGGCTACTACACATTCTCCATAGGTGGCTTCT 122622
Query 14375 TTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCA 14434
|||| | ||||| | ||||| || | || || || | | || |||||| |||
Sbjct 122623 TTGTCCCCAATCCAATGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCA 122682
Query 14435 ATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAG 14494
||||| || || | |||| ||||||| | | | |||||| ||||| || || |
Sbjct 122683 ATAGCGTTGAAGAGGAATTCCCTCTCTTTGGAATGTTTAATGTAAGTATCGATGAGGAGA 122742
Query 14495 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCT 14554
|| |||||||||||||||||||||||||| || ||||| || ||||| ||||| | |||
Sbjct 122743 CTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCAGGCT 122802
Query 14555 TCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14614
|||| || || ||| | ||| | | |||| |||||||| ||||| ||||||
Sbjct 122803 TCTGTAATCTGAACTTCTTGGCTAAACCGCTTCACCAAGTTTTCATTCACTATTCCATCA 122862
Query 14615 CTAGCTGCAAAAAATGCCA--ATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTT 14672
|| || || ||||| || | | ||| | ||||| ||| ||| ||| | ||
Sbjct 122863 CTGGCCGCGAAAAAAGCAAGCACATGGGAT--ATAAAATATCTCTCCTCAGGTTTCAGGG 122920
Query 14673 TTTTCCAATCGGCT--AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGC 14730
| ||| | ||| | ||||| ||||| || || || ||| |||||||||| ||
Sbjct 122921 CCTCCCAGT--GCTGGATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAATGAGGC 122978
Query 14731 AACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14787
| || || |||||||| ||| || || | ||| || ||||| | |||||
Sbjct 122979 CTCGGCCTTCTTATACATCTGCCAGATATCATGGTATTTGATGGGAAAGATGACAAA 123035
>seq418
Length=2079112
Score = 306 bits (338), Expect = 4e-78
Identities = 610/896 (68%), Gaps = 17/896 (2%)
Strand=Plus/Plus
Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957
|| || | |||||| | ||||| || | ||||| || ||||||||||||||||| |||
Sbjct 761069 GACATCATGCCCATCCTCTGATACTCCCCTACTCTCTTCTCAAAGAAGTTAGTTTTGCCT 761128
Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATT-TGTTGACATAAACACTTTATCACA 14016
|||| ||| || || |||||||| ||||||||||| | | | ||| ||| | | |
Sbjct 761129 TCCAATGAAATGTTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTGA-A 761187
Query 14017 ACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACA 14076
|| || || | || | ||| ||||| | || ||||| || || ||||||| ||
Sbjct 761188 GCCCAGCTCCAGTATAAGTCTGTCCGCCACAAATTCAATGTACTGCTTCATTAAAGTGCA 761247
Query 14077 ATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACAC 14136
||||| || || || || || || | | || | || || | |||||| ||
Sbjct 761248 GTTCATCCCGATGAGATTCACTGGCAAGGCCTCTGTGAGGAACTCCTGTTCTATCCTGAC 761307
Query 14137 AGCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAA 14196
|| | | || || | | | | | |||| || | |||||||| ||
Sbjct 761308 TGCATTGACAATTATTTCTCTGACTCTCTGCTCCAAAGGTTTATGTACCAGATGTTTGAA 761367
Query 14197 AATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAA 14256
||||||||||||||||||||||| || ||||||||||| ||||| || | || |||||
Sbjct 761368 CATTAAACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTTATTCGAAAA 761427
Query 14257 TGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGA 14316
||| | || ||||||||||||||||| || | ||| ||||| | || || || || ||
Sbjct 761428 TGTAAGACCAGGCATCAATCCTCGTTTCTTAAGCCAGAATATGGATGCAAAAGAACCAGA 761487
Query 14317 AAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTT 14376
| |||| ||||| || ||||| ||| ||| || |||||||| | | |||| |||
Sbjct 761488 ATAGAAGATTCCTTCCACTGCTCTAAAGGCTCCTACATGTTCTCCATAGGTGGCTTCTTT 761547
Query 14377 GTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAAT 14436
|| | ||||| ||||| || | || || || | | || |||||| |||||
Sbjct 761548 GTCCCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAAT 761607
Query 14437 AGCATTAAATAAATGTTCCTTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAGC 14495
||| || || | |||| ||||||| | | ||| || ||||| || || | |
Sbjct 761608 AGCGTTGAAGAGGAATTCCCTCTCTTTGGAATCTT------TAAGTATCGATGAGGAGAC 761661
Query 14496 TATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTT 14555
| |||||||||||||||||||||||||| || ||||| || ||||| ||||| || ||||
Sbjct 761662 TGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCTGGCTT 761721
Query 14556 CTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCAC 14615
||| || || ||| | ||| | || | || |||||||| ||||| |||||||
Sbjct 761722 CTGTAATCTGAACTTCTTGGCTAAACCGCTCCACAAAGTTTTCATTCACTATGCCATCAC 761781
Query 14616 TAGCTGCAAAAAATGCCA--ATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTT 14673
| || || || || |||| | ||| | ||||| ||| ||| ||| | ||
Sbjct 761782 TGGCCGCGAAGAAAGCCAGCACATGGGAT--ATAAAATATCTCTCCTCAGGTTTCAGGGC 761839
Query 14674 TTTCCAATCGGCT--AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCA 14731
| ||| | ||| | ||||| ||||| || || || ||| ||||||||| |||
Sbjct 761840 CTCCCAGT--GCTGGATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAGTGAAGCC 761897
Query 14732 ACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14787
| ||||| |||||||| ||| || || | ||| || ||||| | |||||
Sbjct 761898 TCGGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATGGGAAAGATGACAAA 761953
>seq446
Length=2046506
Score = 120 bits (132), Expect = 3e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285
|||||||||| ||||| || || ||||||||||| | || ||||||| ||||||||| |
Sbjct 492610 CCTCATCTCTGCTAATTAGCTCATTTGAAAATGTAAGACCAGGCATCAGTCCTCGTTTCT 492551
Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345
| | ||| ||||| | || || || || |||||||| ||||| || ||||| ||||| |
Sbjct 492550 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAGG 492491
Query 14346 CTATTAATCGTTCTCC 14361
||| || ||||||||
Sbjct 492490 CTACTACACGTTCTCC 492475
Score = 95.1 bits (104), Expect = 1e-14
Identities = 78/95 (82%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957
|| || |||||||| | ||||| || | ||||| || ||||||||||||||||| |||
Sbjct 493894 GACATCACGCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTTTTGCCT 493835
Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATT 13992
|||| ||| || || |||||||| |||||||||||
Sbjct 493834 TCCAATGAAATGTTCTCCATAAAGTCAAATGGATT 493800
Score = 89.7 bits (98), Expect = 5e-13
Identities = 81/102 (79%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 14457 TCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 14516
||||||| | | | |||||| ||||| || || | || |||||||||||||||||||
Sbjct 489528 TCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAGTGTATGT 489469
Query 14517 TTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14558
||||||| || ||||| || ||||| ||||| | |||||||
Sbjct 489468 TTTCCATGGCAATCTGGAAGCCATAGAAACAGCGGGCTTCTG 489427
>seq34
Length=7729394
Score = 93.3 bits (102), Expect = 4e-14
Identities = 240/364 (66%), Gaps = 39/364 (11%)
Strand=Plus/Minus
Query 14186 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 14245
|||||||| || || ||| | ||||| | |||||| || ||||||||||| ||
Sbjct 4966371 AGATGTTTGAACATCAAATATGCAAAGTGACAATGGAGTCCCTCATCTCT--------GT 4966320
Query 14246 TCGTTTGAAAA-TGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC 14304
|| || ||||| ||| | || | |||||||| || ||| || || | ||||| | ||
Sbjct 4966319 TCATTGGAAAAATGTAAGACCAGACATCAATCTTCATTTCTTGAATGAGAATATGGATGC 4966260
Query 14305 GAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAA 14364
|| || || | ||||||||||| || | || ||||| |||| || |||||||
Sbjct 4966259 AAAAGAACCAGGAAAGAATATTCTTTCCATAGCTGCAAAAGCTACTACATATTCTCCA-- 4966202
Query 14365 CGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATC 14424
||||| | | ||| | ||||| || | ||| ||| ||| ||
Sbjct 4966201 ------TTTTTGGCCCCCAATCAAACACAAGGCCCAGTCTGCTTTCTTT---ATACAAGA 4966151
Query 14425 CATTGTTTCAATAGCATT--AAATAAATGTTCCTTCTCTTTAGTA-CTTGAAATGTATGT 14481
|||||| ||||||| || || ||||| | ||||||| | | ||| ||| |
Sbjct 4966150 CATTGTCTCAATAGTGTTGAAAGGGAATGT--CCTCTCTTTGGAATCTTTAAA------T 4966099
Query 14482 ATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATA 14541
|| || || | |||| |||||||| ||| ||||||||| || ||||||||
Sbjct 4966098 ATTGATGAGGAGATTATATATTTCAGAATGTTTGTTTTCCA--------TGGAAACCATA 4966047
Query 14542 AAAA 14545
||||
Sbjct 4966046 AAAA 4966043
>seq956
Length=748348
Score = 86.0 bits (94), Expect = 6e-12
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957
|| || ||| |||| | ||| | || | ||||| || ||||||||||||||||| |||
Sbjct 286099 GACATCACGGCCATCCTCTGAAACTCGCCTACTCTCTTCTCAAAGAAGTTAGTTTTGCCT 286158
Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATT 13992
|||| ||| || || |||||||| |||||||||||
Sbjct 286159 TCCAATGAAATGTTCTCCATAAAGTCAAATGGATT 286193
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482310611856040
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