Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq24 86.0 5e-12 >seq24 Length=8999101 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || || || ||| | || || || || || || |||| ||||| | Sbjct 2890726 ATGCAGATTTTCGTGAAGACCCTCACTGGGAAGACCATCACGCTCGAGGTCGAGCCCTCA 2890667 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | |||| | ||| || | || || | ||||||||| | || ||||||| Sbjct 2890666 GATACTATAGAGAATGTGAAAGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCAG 2890607 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGAT-TCCATGACTATGAACGATTACAG 25010 |||||| | || | ||| ||||| || ||||||||| ||| ||| || || |||| Sbjct 2890606 CAACGTCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCAT-ACTCTGTCGGACTACAA 2890548 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 ||| || || ||| |||| |||||| | || || || |||| || ||| Sbjct 2890547 CATTCAAAAGGAGTCCACACTTCATCTTGTTTTGAGACTGCGTGGTGGT 2890499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418274415841760