Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq30 196 4e-45 seq418 168 6e-37 seq602 163 3e-35 seq339 136 4e-27 seq24 111 1e-19 seq92 87.8 2e-12 seq41 84.2 2e-11 >seq30 Length=8517879 Score = 196 bits (216), Expect = 4e-45 Identities = 535/802 (67%), Gaps = 33/802 (4%) Strand=Plus/Plus Query 57524 AGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTA 57583 ||| || |||||| | |||||||| ||||| || ||||| | || || ||| | ||||| Sbjct 2591061 AGAAAACCCCCGTCGCTTTGTCATCTTTCCCATCGAATACCATGATATCTGGCAGATGTA 2591120 Query 57584 CAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTG-A 57642 || ||||| || || || |||||||| | || || || ||||| || | ||| | | Sbjct 2591121 TAAGAAGGCCGAGGCCTCATTTTGGACAGCTGAGGAGGTGGACCTTTCCAGGGACATCCA 2591180 Query 57643 GCGATTGGGATTCCC-TCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTT 57701 || | ||||| ||| | ||| |||||| ||||||| || || |||| || Sbjct 2591181 GC-ACTGGGAGGCCCCTGAAACCTGAGGAGAGATATTTTATATCCCATGTCCTGGCTTTC 2591239 Query 57702 TTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTG 57761 ||||| || ||||| || || | || || ||||| || | ||| |||||||| Sbjct 2591240 TTCGCAGCCAGTGATGGCATAGTGAGTGAAAACTTGGTGGAGCGGTTTAGCCAAGAAGTT 2591299 Query 57762 CAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCA 57821 || | || || || | || || || || || || | ||||| |||||| | || || Sbjct 2591300 CAGATTACAGAAGCCTGCTGTTTCTATGGCTTCCAGATTGCCATGGAAAACATACACTCT 2591359 Query 57822 GAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA---CAACGACGAGAAACGTAGA 57878 |||||||| || ||||||||||| ||||| || || ||| || ||| | | Sbjct 2591360 GAAATGTACAGTCTCCTCATCGATACTTACGTTAAAGATTCCAAAGA-GAGGGAATT--C 2591416 Query 57879 CTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAA 57938 || |||||||| || || |||||||| | ||||||||||| ||| | | Sbjct 2591417 CTCTTCAACGCTATTGAGACAATGCCTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGTGT 2591476 Query 57939 TGGAT-----AAAAAG-CGCCACGGCCACGTTCGCCGAGA--GGCTAATCGCGTTCGCCG 57990 ||||| | |||| ||||| ||| | |||| | || | || || || | Sbjct 2591477 TGGATTGGGGACAAAGAAGCCAC--CCATG------GAGAATGTGTAGTAGCCTTTGCAG 2591528 Query 57991 CCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCG 58050 | || ||||| || |||||||| || ||||| | ||||| ||| | |||||||| | Sbjct 2591529 CAGTTGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGGCTCAAGAAACGAG 2591588 Query 58051 GCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGC-GCGACGAGGGTCTCCAT 58109 | ||||||||||| || || ||| || ||| | || | || | || ||||| |||||| Sbjct 2591589 GACTGATGCCCGGTCTTACATTTTCGAATGAGCTAAT-TAGCAGAGATGAGGGACTCCAT 2591647 Query 58110 ACTGATTTTGCGTGCCTAATGTACTCTCACAT-TG-TCAATAAACCGACGCGGGATCGCA 58167 |||||||||||| |||||| || |||| || | ||||||| || | | | Sbjct 2591648 TGTGATTTTGCGTGTTTAATGT--TCAAACATCTGCTACATAAACCTTCGGAGCAGAGAG 2591705 Query 58168 TCTTGG--ACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCT 58225 || | | || || | | || ||| ||| ||| | ||||| |||| | ||| | Sbjct 2591706 TCAGAGAAATATAATTGTCAATGCTGTCAGGATAGAACAGGAGTTCCTCACAAAGGCCTT 2591765 Query 58226 ACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGC 58285 || ||| | |||| |||||| ||| ||| |||||||||| || || || Sbjct 2591766 GCCAGTGAATCTCATCGGGATGAACTGCACTTTAATGAAGCAGTACATTGAATTCGTGGC 2591825 Query 58286 CGACAGACTTTTGCTCGAACTG 58307 ||||||||| | || || ||| Sbjct 2591826 CGACAGACTCATACTGGAGCTG 2591847 >seq418 Length=2079112 Score = 168 bits (186), Expect = 6e-37 Identities = 527/807 (65%), Gaps = 23/807 (3%) Strand=Plus/Minus Query 57510 GAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGAC 57569 || ||||| || ||| || |||||| |||||||| ||||| || ||||| | || Sbjct 761983 GAGCCACTCCTGAGAGAAAACCCCCGTCACTTTGTCATCTTTCCCATCGAATACCATGAT 761924 Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 |||||| | ||||| || || || || || || ||||||| | || || || ||||| Sbjct 761923 ATTTGGCAGATGTATAAGAAAGCCGAGGCTTCACTTTGGACAGCTGAGGAGGTGGACCTT 761864 Query 57630 TCTAAGGATCTG-AGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACA 57688 || ||||| | ||| | ||||| |||| ||| |||||| ||||||| || Sbjct 761863 TCCAAGGACATCCAGC-ACTGGGAGGCCCTGAAACCTGAGGAGAGATATTTTATATCCCA 761805 Query 57689 CGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATT 57748 ||| |||| || ||||| || ||||| || || || || || || || || | || Sbjct 761804 TGTGCTGGCTTTCTTCGCGGCCAGTGATGGCATAGTGAATGAAAACTTTGTGGAGCGGTT 761745 Query 57749 TTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGA 57808 | |||||||| || | || || || || || || || || || || | ||||| || Sbjct 761744 TAGCCAAGAAGTTCAGATTACAGAAGCCAGCTGTTTCTATGGCTTCCAGATTGCCATGGA 761685 Query 57809 AAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAG--GACAACGAC 57866 |||| | || || |||||||| || ||||||||||| || ||| ||| || Sbjct 761684 AAACATACACTCTGAAATGTACAGTCTCCTCATCGATACTTA----AAGATTCCAAAGA- 761630 Query 57867 GAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAG 57926 ||| | | || |||||||| || || |||||||| | ||||||||||| Sbjct 761629 GAGGGAATT--CCTCTTCAACGCTATTGAGACAATGCCTTGTGTAAAGAAGAAGGCAGAT 761572 Query 57927 TGGTCAATCAAATGGAT-----AAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCG 57981 ||| | | ||||| | |||| ||||| | | || || | Sbjct 761571 TGGGCCTTGCGCTGGATTGGGGACAAAG-----AAGCCACCTATGGAGAACATGTAGGAG 761517 Query 57982 CGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGA 58041 | || || || ||||| || |||| ||| || ||||| | ||||| ||| | | Sbjct 761516 CCTTTAGAGCAGTGGAAGGAATCTTCTATTCTGGTTCTTTTGCATCCATATTCTGGCTTA 761457 Query 58042 AGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGC-GCGACGAG 58100 ||||||| || ||||||| || || || ||| || || | || | || | || ||| Sbjct 761456 AGAAACGAGGATTGATGCCTGGTCTTACATTTTCGAATAAGCTAAT-TAGCAGAGATGAG 761398 Query 58101 GGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGG 58160 || |||||| |||||||||||| |||||| | || | || ||||||| | | Sbjct 761397 GGACTCCATTGTGATTTTGCGTGTTTAATGTTCAAACATCTGGTACATAAACCTTTGGAG 761338 Query 58161 GATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAA 58220 | | || || || || | | || ||| ||| ||| | ||||| |||| || Sbjct 761337 CAGAGAGTCAGAGAAATAATTGTCAATGCAGTCAGGATAGAACAGGAGTTCCTCACAGAG 761278 Query 58221 GCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTT 58280 ||| | || ||| | |||| |||||| ||| ||| |||||||||| ||| Sbjct 761277 GCCTTGCCAGTGAATCTCATCGGGATGAACTGCACTTTAATGAAGCAGTACATTGAATTT 761218 Query 58281 GTTGCCGACAGACTTTTGCTCGAACTG 58307 || || ||||||||| | || || ||| Sbjct 761217 GTGGCGGACAGACTTATACTGGAGCTG 761191 >seq602 Length=1640730 Score = 163 bits (180), Expect = 3e-35 Identities = 425/638 (67%), Gaps = 24/638 (4%) Strand=Plus/Minus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCC---GTAGATTTGTCATGTTTCCGATTGAATAT 57563 || || |||||| || ||| || | || || | |||||||| ||||| || |||| Sbjct 123071 GAGGAGCCACTTCTGAGAGAAAACCACCACCGTCGCTTTGTCATCTTTCCCATCAAATAC 123012 Query 57564 CCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTA 57623 | || || ||| | ||||| || ||||| || || || |||||||| | || || || Sbjct 123011 CATGATATCTGGCAGATGTATAAGAAGGCCGAGGCCTCATTTTGGACAGCTGAGGAGGTG 122952 Query 57624 GACCTGTCTAAGGATCTG-AGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTAT 57682 ||||| || ||||| | ||| | ||||| |||| ||| |||||| ||||||| Sbjct 122951 GACCTTTCCAAGGACATCCAGC-ACTGGGAGGCCCTGAAACCTGAGGAGAGATATTTTAT 122893 Query 57683 TAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGA 57742 || ||| | || |||||||| || ||||| || || || || || ||||| | Sbjct 122892 ATCCCATGTGCTTGCTTTTTTCGCGGCCAGTGATGGAATAGTGAATGAAAACTTGGTGAA 122833 Query 57743 AAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGC 57802 | ||| |||||||| || | || || || | || || || || || || | || Sbjct 122832 GCGGTTTAGCCAAGAAGTTCAGATTACAGAAGCCTGCTGTTTCTATGGCTTCCAGATTGC 122773 Query 57803 CATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA--- 57859 ||| |||||| | || || |||||||| || ||||||||||| ||| | || | Sbjct 122772 CATGGAAAACATACACTCTGAAATGTACAGTCTCCTCATCGATACTTACATTAAACATTC 122713 Query 57860 CAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAA 57919 ||| || ||| | | || |||||||| || || |||||||| | ||||| Sbjct 122712 CAAAGA-GAGGGAATT--CCTCTTCAACGCTATTGAGACAATGCCTTGTGTAAAGAAGAA 122656 Query 57920 GGCAGAGTGGTCAATCAAATGGAT-----AAAAAGCGCCACGGCCACGTTCGCCGAGAGG 57974 |||||| ||| | | | ||||| | |||| ||||| | | || | Sbjct 122655 GGCAGATTGGGCCTTGCATTGGATTGGGGACAAAG-----AAGCCACCTATGGAGAATGT 122601 Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || | || || || || || ||||| || |||||||| | ||||| | ||||| Sbjct 122600 GTAGTAGCCTTTGCAGCAGTGGAAGGAATCTTCTTTTCTAGTTCTTTTGCATCCATATTC 122541 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGC-G 58093 ||| | |||||||| || ||||||| || || || ||| || | | || | || | Sbjct 122540 TGGCTCAAGAAACGAGGATTGATGCCTGGTCTTACATTTTCGAATGCACTAAT-TAGCAG 122482 Query 58094 CGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGT 58131 || ||||| |||||| |||||||||||| |||||| Sbjct 122481 AGATGAGGGACTCCATTGTGATTTTGCGTG-TTAATGT 122445 >seq339 Length=2552696 Score = 136 bits (150), Expect = 4e-27 Identities = 117/145 (81%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| ||||||||||||| ||| || || |||||||| || || || || Sbjct 2045409 ACCTCATCTTTGCTGGTGTACTCTACAACTTCTGTGCACAGATTGCTGCATTTGATGGTT 2045350 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| || |||||||| ||||| |||||||||||||| || ||| Sbjct 2045349 CCCAGGTTCTGCTGGTTGCTCTTCCGATTGCAAGAATCTTTGTAGAGCATGTAGGGGGTG 2045290 Query 23168 CCCGTCTCGACCTGCGACTCGATGA 23192 |||||||| ||| |||||||||| Sbjct 2045289 CCCGTCTCTGTCTGAGACTCGATGA 2045265 >seq24 Length=8999101 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || || || || ||||| |||| || || || Sbjct 2890729 AAGATGCAGATTTTCGTGAAGACCCTCACTGGGAAGACCATCACGCTCGAGGTCGAGCCC 2890670 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | | || | || ||| | || ||| || |||||| | || || ||| Sbjct 2890669 TCAGATACTATAGAGAATGTGAAAGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGAC 2890610 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||| ||||| || || |||||||| ||| ||||||| ||| || || || Sbjct 2890609 CAGCAACGTCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCATACTCTGTCGGACTAC 2890550 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||||||||| || || || |||||||| || | |||||| | || ||| Sbjct 2890549 AACATTCAAAAGGAGTCCACACTTCATCTTGTTTTGAGACTGCGTGGTGGT 2890499 >seq92 Length=5367877 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 57532 CCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGG 57591 |||| | |||||||| ||||| || | ||||| ||||||||||| ||||||||| ||| Sbjct 3837418 CCCGGCGGTTTGTCATCTTTCCCATCCAGTATCCCGACATTTGGAAGATGTACAAACAGG 3837477 Query 57592 CAGAAGCATCGTTTTGGACCGTCGAAGAAGT 57622 || ||||||| || ||||| | |||||| || Sbjct 3837478 CACAAGCATCCTTCTGGACAGCCGAAGAGGT 3837508 >seq41 Length=6870668 Score = 84.2 bits (92), Expect = 2e-11 Identities = 119/163 (73%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| |||||||| ||||| ||||| |||| |||||||| |||||| | || || || Sbjct 2879831 TCAAA-ATGCAAATCTTCGTGAAGACCCTGAATGGCAAAACCATCACCCTGGAAGTGAAA 2879773 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCG-GACAAGGAAGGCGTGCCGCC 31305 || ||| | |||| | || || | || | | || ||||||||| | || | Sbjct 2879772 CCTAGCGATACCATCGAGAATGTGAAG--GCCAAGACCCAGATAAGGAAGGCATCCC--C 2879717 Query 31306 CGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||||||| | || || || |||||||| ||| |||||||| Sbjct 2879716 CGACCAGCAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAAGAC 2879674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445734065219760