Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq30 196 4e-45
seq418 168 6e-37
seq602 163 3e-35
seq339 136 4e-27
seq24 111 1e-19
seq92 87.8 2e-12
seq41 84.2 2e-11
>seq30
Length=8517879
Score = 196 bits (216), Expect = 4e-45
Identities = 535/802 (67%), Gaps = 33/802 (4%)
Strand=Plus/Plus
Query 57524 AGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTA 57583
||| || |||||| | |||||||| ||||| || ||||| | || || ||| | |||||
Sbjct 2591061 AGAAAACCCCCGTCGCTTTGTCATCTTTCCCATCGAATACCATGATATCTGGCAGATGTA 2591120
Query 57584 CAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTG-A 57642
|| ||||| || || || |||||||| | || || || ||||| || | ||| | |
Sbjct 2591121 TAAGAAGGCCGAGGCCTCATTTTGGACAGCTGAGGAGGTGGACCTTTCCAGGGACATCCA 2591180
Query 57643 GCGATTGGGATTCCC-TCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTT 57701
|| | ||||| ||| | ||| |||||| ||||||| || || |||| ||
Sbjct 2591181 GC-ACTGGGAGGCCCCTGAAACCTGAGGAGAGATATTTTATATCCCATGTCCTGGCTTTC 2591239
Query 57702 TTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTG 57761
||||| || ||||| || || | || || ||||| || | ||| ||||||||
Sbjct 2591240 TTCGCAGCCAGTGATGGCATAGTGAGTGAAAACTTGGTGGAGCGGTTTAGCCAAGAAGTT 2591299
Query 57762 CAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCA 57821
|| | || || || | || || || || || || | ||||| |||||| | || ||
Sbjct 2591300 CAGATTACAGAAGCCTGCTGTTTCTATGGCTTCCAGATTGCCATGGAAAACATACACTCT 2591359
Query 57822 GAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA---CAACGACGAGAAACGTAGA 57878
|||||||| || ||||||||||| ||||| || || ||| || ||| | |
Sbjct 2591360 GAAATGTACAGTCTCCTCATCGATACTTACGTTAAAGATTCCAAAGA-GAGGGAATT--C 2591416
Query 57879 CTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAA 57938
|| |||||||| || || |||||||| | ||||||||||| ||| | |
Sbjct 2591417 CTCTTCAACGCTATTGAGACAATGCCTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGTGT 2591476
Query 57939 TGGAT-----AAAAAG-CGCCACGGCCACGTTCGCCGAGA--GGCTAATCGCGTTCGCCG 57990
||||| | |||| ||||| ||| | |||| | || | || || || |
Sbjct 2591477 TGGATTGGGGACAAAGAAGCCAC--CCATG------GAGAATGTGTAGTAGCCTTTGCAG 2591528
Query 57991 CCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCG 58050
| || ||||| || |||||||| || ||||| | ||||| ||| | |||||||| |
Sbjct 2591529 CAGTTGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGGCTCAAGAAACGAG 2591588
Query 58051 GCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGC-GCGACGAGGGTCTCCAT 58109
| ||||||||||| || || ||| || ||| | || | || | || ||||| ||||||
Sbjct 2591589 GACTGATGCCCGGTCTTACATTTTCGAATGAGCTAAT-TAGCAGAGATGAGGGACTCCAT 2591647
Query 58110 ACTGATTTTGCGTGCCTAATGTACTCTCACAT-TG-TCAATAAACCGACGCGGGATCGCA 58167
|||||||||||| |||||| || |||| || | ||||||| || | | |
Sbjct 2591648 TGTGATTTTGCGTGTTTAATGT--TCAAACATCTGCTACATAAACCTTCGGAGCAGAGAG 2591705
Query 58168 TCTTGG--ACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCT 58225
|| | | || || | | || ||| ||| ||| | ||||| |||| | ||| |
Sbjct 2591706 TCAGAGAAATATAATTGTCAATGCTGTCAGGATAGAACAGGAGTTCCTCACAAAGGCCTT 2591765
Query 58226 ACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGC 58285
|| ||| | |||| |||||| ||| ||| |||||||||| || || ||
Sbjct 2591766 GCCAGTGAATCTCATCGGGATGAACTGCACTTTAATGAAGCAGTACATTGAATTCGTGGC 2591825
Query 58286 CGACAGACTTTTGCTCGAACTG 58307
||||||||| | || || |||
Sbjct 2591826 CGACAGACTCATACTGGAGCTG 2591847
>seq418
Length=2079112
Score = 168 bits (186), Expect = 6e-37
Identities = 527/807 (65%), Gaps = 23/807 (3%)
Strand=Plus/Minus
Query 57510 GAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGAC 57569
|| ||||| || ||| || |||||| |||||||| ||||| || ||||| | ||
Sbjct 761983 GAGCCACTCCTGAGAGAAAACCCCCGTCACTTTGTCATCTTTCCCATCGAATACCATGAT 761924
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|||||| | ||||| || || || || || || ||||||| | || || || |||||
Sbjct 761923 ATTTGGCAGATGTATAAGAAAGCCGAGGCTTCACTTTGGACAGCTGAGGAGGTGGACCTT 761864
Query 57630 TCTAAGGATCTG-AGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACA 57688
|| ||||| | ||| | ||||| |||| ||| |||||| ||||||| ||
Sbjct 761863 TCCAAGGACATCCAGC-ACTGGGAGGCCCTGAAACCTGAGGAGAGATATTTTATATCCCA 761805
Query 57689 CGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATT 57748
||| |||| || ||||| || ||||| || || || || || || || || | ||
Sbjct 761804 TGTGCTGGCTTTCTTCGCGGCCAGTGATGGCATAGTGAATGAAAACTTTGTGGAGCGGTT 761745
Query 57749 TTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGA 57808
| |||||||| || | || || || || || || || || || || | ||||| ||
Sbjct 761744 TAGCCAAGAAGTTCAGATTACAGAAGCCAGCTGTTTCTATGGCTTCCAGATTGCCATGGA 761685
Query 57809 AAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAG--GACAACGAC 57866
|||| | || || |||||||| || ||||||||||| || ||| ||| ||
Sbjct 761684 AAACATACACTCTGAAATGTACAGTCTCCTCATCGATACTTA----AAGATTCCAAAGA- 761630
Query 57867 GAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAG 57926
||| | | || |||||||| || || |||||||| | |||||||||||
Sbjct 761629 GAGGGAATT--CCTCTTCAACGCTATTGAGACAATGCCTTGTGTAAAGAAGAAGGCAGAT 761572
Query 57927 TGGTCAATCAAATGGAT-----AAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCG 57981
||| | | ||||| | |||| ||||| | | || || |
Sbjct 761571 TGGGCCTTGCGCTGGATTGGGGACAAAG-----AAGCCACCTATGGAGAACATGTAGGAG 761517
Query 57982 CGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGA 58041
| || || || ||||| || |||| ||| || ||||| | ||||| ||| | |
Sbjct 761516 CCTTTAGAGCAGTGGAAGGAATCTTCTATTCTGGTTCTTTTGCATCCATATTCTGGCTTA 761457
Query 58042 AGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGC-GCGACGAG 58100
||||||| || ||||||| || || || ||| || || | || | || | || |||
Sbjct 761456 AGAAACGAGGATTGATGCCTGGTCTTACATTTTCGAATAAGCTAAT-TAGCAGAGATGAG 761398
Query 58101 GGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGG 58160
|| |||||| |||||||||||| |||||| | || | || ||||||| | |
Sbjct 761397 GGACTCCATTGTGATTTTGCGTGTTTAATGTTCAAACATCTGGTACATAAACCTTTGGAG 761338
Query 58161 GATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAA 58220
| | || || || || | | || ||| ||| ||| | ||||| |||| ||
Sbjct 761337 CAGAGAGTCAGAGAAATAATTGTCAATGCAGTCAGGATAGAACAGGAGTTCCTCACAGAG 761278
Query 58221 GCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTT 58280
||| | || ||| | |||| |||||| ||| ||| |||||||||| |||
Sbjct 761277 GCCTTGCCAGTGAATCTCATCGGGATGAACTGCACTTTAATGAAGCAGTACATTGAATTT 761218
Query 58281 GTTGCCGACAGACTTTTGCTCGAACTG 58307
|| || ||||||||| | || || |||
Sbjct 761217 GTGGCGGACAGACTTATACTGGAGCTG 761191
>seq602
Length=1640730
Score = 163 bits (180), Expect = 3e-35
Identities = 425/638 (67%), Gaps = 24/638 (4%)
Strand=Plus/Minus
Query 57507 GATGAACCACTTTTGCAAGAGAATCCCC---GTAGATTTGTCATGTTTCCGATTGAATAT 57563
|| || |||||| || ||| || | || || | |||||||| ||||| || ||||
Sbjct 123071 GAGGAGCCACTTCTGAGAGAAAACCACCACCGTCGCTTTGTCATCTTTCCCATCAAATAC 123012
Query 57564 CCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTA 57623
| || || ||| | ||||| || ||||| || || || |||||||| | || || ||
Sbjct 123011 CATGATATCTGGCAGATGTATAAGAAGGCCGAGGCCTCATTTTGGACAGCTGAGGAGGTG 122952
Query 57624 GACCTGTCTAAGGATCTG-AGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTAT 57682
||||| || ||||| | ||| | ||||| |||| ||| |||||| |||||||
Sbjct 122951 GACCTTTCCAAGGACATCCAGC-ACTGGGAGGCCCTGAAACCTGAGGAGAGATATTTTAT 122893
Query 57683 TAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGA 57742
|| ||| | || |||||||| || ||||| || || || || || ||||| |
Sbjct 122892 ATCCCATGTGCTTGCTTTTTTCGCGGCCAGTGATGGAATAGTGAATGAAAACTTGGTGAA 122833
Query 57743 AAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGC 57802
| ||| |||||||| || | || || || | || || || || || || | ||
Sbjct 122832 GCGGTTTAGCCAAGAAGTTCAGATTACAGAAGCCTGCTGTTTCTATGGCTTCCAGATTGC 122773
Query 57803 CATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA--- 57859
||| |||||| | || || |||||||| || ||||||||||| ||| | || |
Sbjct 122772 CATGGAAAACATACACTCTGAAATGTACAGTCTCCTCATCGATACTTACATTAAACATTC 122713
Query 57860 CAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAA 57919
||| || ||| | | || |||||||| || || |||||||| | |||||
Sbjct 122712 CAAAGA-GAGGGAATT--CCTCTTCAACGCTATTGAGACAATGCCTTGTGTAAAGAAGAA 122656
Query 57920 GGCAGAGTGGTCAATCAAATGGAT-----AAAAAGCGCCACGGCCACGTTCGCCGAGAGG 57974
|||||| ||| | | | ||||| | |||| ||||| | | || |
Sbjct 122655 GGCAGATTGGGCCTTGCATTGGATTGGGGACAAAG-----AAGCCACCTATGGAGAATGT 122601
Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034
|| | || || || || || ||||| || |||||||| | ||||| | |||||
Sbjct 122600 GTAGTAGCCTTTGCAGCAGTGGAAGGAATCTTCTTTTCTAGTTCTTTTGCATCCATATTC 122541
Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGC-G 58093
||| | |||||||| || ||||||| || || || ||| || | | || | || |
Sbjct 122540 TGGCTCAAGAAACGAGGATTGATGCCTGGTCTTACATTTTCGAATGCACTAAT-TAGCAG 122482
Query 58094 CGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGT 58131
|| ||||| |||||| |||||||||||| ||||||
Sbjct 122481 AGATGAGGGACTCCATTGTGATTTTGCGTG-TTAATGT 122445
>seq339
Length=2552696
Score = 136 bits (150), Expect = 4e-27
Identities = 117/145 (81%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107
||||| |||||| ||||||||||||| ||| || || |||||||| || || || ||
Sbjct 2045409 ACCTCATCTTTGCTGGTGTACTCTACAACTTCTGTGCACAGATTGCTGCATTTGATGGTT 2045350
Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167
|||| || ||||||||| || |||||||| ||||| |||||||||||||| || |||
Sbjct 2045349 CCCAGGTTCTGCTGGTTGCTCTTCCGATTGCAAGAATCTTTGTAGAGCATGTAGGGGGTG 2045290
Query 23168 CCCGTCTCGACCTGCGACTCGATGA 23192
|||||||| ||| ||||||||||
Sbjct 2045289 CCCGTCTCTGTCTGAGACTCGATGA 2045265
>seq24
Length=8999101
Score = 111 bits (122), Expect = 1e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||||| ||||| || || || || || ||||| |||| || || ||
Sbjct 2890729 AAGATGCAGATTTTCGTGAAGACCCTCACTGGGAAGACCATCACGCTCGAGGTCGAGCCC 2890670
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| || | | | || | || ||| | || ||| || |||||| | || || |||
Sbjct 2890669 TCAGATACTATAGAGAATGTGAAAGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGAC 2890610
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369
||||| ||||| || || |||||||| ||| ||||||| ||| || || ||
Sbjct 2890609 CAGCAACGTCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCATACTCTGTCGGACTAC 2890550
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
||||||||||| || || || |||||||| || | |||||| | || |||
Sbjct 2890549 AACATTCAAAAGGAGTCCACACTTCATCTTGTTTTGAGACTGCGTGGTGGT 2890499
>seq92
Length=5367877
Score = 87.8 bits (96), Expect = 2e-12
Identities = 74/91 (81%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 57532 CCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGG 57591
|||| | |||||||| ||||| || | ||||| ||||||||||| ||||||||| |||
Sbjct 3837418 CCCGGCGGTTTGTCATCTTTCCCATCCAGTATCCCGACATTTGGAAGATGTACAAACAGG 3837477
Query 57592 CAGAAGCATCGTTTTGGACCGTCGAAGAAGT 57622
|| ||||||| || ||||| | |||||| ||
Sbjct 3837478 CACAAGCATCCTTCTGGACAGCCGAAGAGGT 3837508
>seq41
Length=6870668
Score = 84.2 bits (92), Expect = 2e-11
Identities = 119/163 (73%), Gaps = 6/163 (4%)
Strand=Plus/Minus
Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246
||||| |||||||| ||||| ||||| |||| |||||||| |||||| | || || ||
Sbjct 2879831 TCAAA-ATGCAAATCTTCGTGAAGACCCTGAATGGCAAAACCATCACCCTGGAAGTGAAA 2879773
Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCG-GACAAGGAAGGCGTGCCGCC 31305
|| ||| | |||| | || || | || | | || ||||||||| | || |
Sbjct 2879772 CCTAGCGATACCATCGAGAATGTGAAG--GCCAAGACCCAGATAAGGAAGGCATCCC--C 2879717
Query 31306 CGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348
|||||||||| | || || || |||||||| ||| ||||||||
Sbjct 2879716 CGACCAGCAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAAGAC 2879674
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445734065219760
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