Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq30 127 4e-24
seq602 98.7 2e-15
seq446 93.3 8e-14
>seq30
Length=8517879
Score = 127 bits (140), Expect = 4e-24
Identities = 225/325 (69%), Gaps = 11/325 (3%)
Strand=Plus/Plus
Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977
|| |||||||| ||||||||||||||||||||| |||| | || |||||||| ||||||
Sbjct 2591516 GTAGCCTTTGCAGCAGTTGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGG 2591575
Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037
||||||| | || | |||| ||||| || | || |||||| | ||| || ||
Sbjct 2591576 CTCAAGAAACGAGGACTGATGCCCGGTCTTACATTTTCGAATGAGCTAATTAGCAGAGAT 2591635
Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097
|| || || ||| | || ||||| || | |||| ||| | | | | ||| ||
Sbjct 2591636 GAGGGACTCCATTGTGATTTTGCGTGTTTAATGTTCAAACA---TCTGCTACATAAACCT 2591692
Query 102098 TC--AAGAGAAAG---GATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAAT 102152
|| | ||| || || | |||||||| | || ||| | || ||||| || |
Sbjct 2591693 TCGGAGCAGAGAGTCAGAGAAATATAATTGTCA---ATGCTGTCAGGATAGAACAGGAGT 2591749
Query 102153 TTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGT 102212
| |||||| || |||| || || | | || |||||||||| || |||| ||||
Sbjct 2591750 TCCTCACAAAGGCCTTGCCAGTGAATCTCATCGGGATGAACTGCACTTTAATGAAGCAGT 2591809
Query 102213 ACATTGAATTTGTGGCAGATAAACT 102237
|||||||||| ||||| || | |||
Sbjct 2591810 ACATTGAATTCGTGGCCGACAGACT 2591834
>seq602
Length=1640730
Score = 98.7 bits (108), Expect = 2e-15
Identities = 217/321 (68%), Gaps = 6/321 (2%)
Strand=Plus/Minus
Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977
|| |||||||| ||||| ||||||||||||||| | || | || |||||||| ||||||
Sbjct 122597 GTAGCCTTTGCAGCAGTGGAAGGAATCTTCTTTTCTAGTTCTTTTGCATCCATATTCTGG 122538
Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037
||||||| | || | |||||||||| || | || |||| | ||| || ||
Sbjct 122537 CTCAAGAAACGAGGATTGATGCCTGGTCTTACATTTTCGAATGCACTAATTAGCAGAGAT 122478
Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097
|| || || ||| | || ||||| || | |||| ||| | | | | ||| ||
Sbjct 122477 GAGGGACTCCATTGTGATTTTGCGTG-TTAATGTTCAAACA---TCTGCTACATAAACCT 122422
Query 102098 TCAAGAGAAAGGATTC-TTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCT 102156
|| ||| | || || ||||| || | || ||| | || ||||| || || ||
Sbjct 122421 TC-GGAGCAGAGAGTCAGAGAAATAATCGTCAATGCTGTCAGGATAGAACAGGAGTTCCT 122363
Query 102157 CACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACAT 102216
|||| || |||| | || | | || ||||| |||| || |||| |||||||
Sbjct 122362 TACAGAGGCCTTGCCAATAAATCTCATCGGGATGAATTGCACTTTAATGAAGCAGTACAC 122303
Query 102217 TGAATTTGTGGCAGATAAACT 102237
|||||| ||||| || | |||
Sbjct 122302 TGAATTCGTGGCGGACAGACT 122282
>seq446
Length=2046506
Score = 93.3 bits (102), Expect = 8e-14
Identities = 87/111 (78%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977
|| |||||||| ||||| ||||||||||||||| |||| | || |||||||| ||||||
Sbjct 492487 GTAGCCTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGG 492546
Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATT 102028
||||||| | || | |||||||||| || | || |||||| | |||
Sbjct 492547 CTCAAGAAACGAGGACTGATGCCTGGTCTTACATTTTCAAATGAGCTAATT 492597
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989510423501865
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |