Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq30 127 4e-24 seq602 98.7 2e-15 seq446 93.3 8e-14 >seq30 Length=8517879 Score = 127 bits (140), Expect = 4e-24 Identities = 225/325 (69%), Gaps = 11/325 (3%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || |||||||| ||||||||||||||||||||| |||| | || |||||||| |||||| Sbjct 2591516 GTAGCCTTTGCAGCAGTTGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGG 2591575 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | || | |||| ||||| || | || |||||| | ||| || || Sbjct 2591576 CTCAAGAAACGAGGACTGATGCCCGGTCTTACATTTTCGAATGAGCTAATTAGCAGAGAT 2591635 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 || || || ||| | || ||||| || | |||| ||| | | | | ||| || Sbjct 2591636 GAGGGACTCCATTGTGATTTTGCGTGTTTAATGTTCAAACA---TCTGCTACATAAACCT 2591692 Query 102098 TC--AAGAGAAAG---GATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAAT 102152 || | ||| || || | |||||||| | || ||| | || ||||| || | Sbjct 2591693 TCGGAGCAGAGAGTCAGAGAAATATAATTGTCA---ATGCTGTCAGGATAGAACAGGAGT 2591749 Query 102153 TTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGT 102212 | |||||| || |||| || || | | || |||||||||| || |||| |||| Sbjct 2591750 TCCTCACAAAGGCCTTGCCAGTGAATCTCATCGGGATGAACTGCACTTTAATGAAGCAGT 2591809 Query 102213 ACATTGAATTTGTGGCAGATAAACT 102237 |||||||||| ||||| || | ||| Sbjct 2591810 ACATTGAATTCGTGGCCGACAGACT 2591834 >seq602 Length=1640730 Score = 98.7 bits (108), Expect = 2e-15 Identities = 217/321 (68%), Gaps = 6/321 (2%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || |||||||| ||||| ||||||||||||||| | || | || |||||||| |||||| Sbjct 122597 GTAGCCTTTGCAGCAGTGGAAGGAATCTTCTTTTCTAGTTCTTTTGCATCCATATTCTGG 122538 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | || | |||||||||| || | || |||| | ||| || || Sbjct 122537 CTCAAGAAACGAGGATTGATGCCTGGTCTTACATTTTCGAATGCACTAATTAGCAGAGAT 122478 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 || || || ||| | || ||||| || | |||| ||| | | | | ||| || Sbjct 122477 GAGGGACTCCATTGTGATTTTGCGTG-TTAATGTTCAAACA---TCTGCTACATAAACCT 122422 Query 102098 TCAAGAGAAAGGATTC-TTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCT 102156 || ||| | || || ||||| || | || ||| | || ||||| || || || Sbjct 122421 TC-GGAGCAGAGAGTCAGAGAAATAATCGTCAATGCTGTCAGGATAGAACAGGAGTTCCT 122363 Query 102157 CACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACAT 102216 |||| || |||| | || | | || ||||| |||| || |||| ||||||| Sbjct 122362 TACAGAGGCCTTGCCAATAAATCTCATCGGGATGAATTGCACTTTAATGAAGCAGTACAC 122303 Query 102217 TGAATTTGTGGCAGATAAACT 102237 |||||| ||||| || | ||| Sbjct 122302 TGAATTCGTGGCGGACAGACT 122282 >seq446 Length=2046506 Score = 93.3 bits (102), Expect = 8e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || |||||||| ||||| ||||||||||||||| |||| | || |||||||| |||||| Sbjct 492487 GTAGCCTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGG 492546 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATT 102028 ||||||| | || | |||||||||| || | || |||||| | ||| Sbjct 492547 CTCAAGAAACGAGGACTGATGCCTGGTCTTACATTTTCAAATGAGCTAATT 492597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989510423501865