Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq30 333 3e-86 seq602 331 9e-86 seq418 318 6e-82 seq446 123 2e-23 seq34 93.3 4e-14 seq956 86.0 6e-12 >seq30 Length=8517879 Score = 333 bits (368), Expect = 3e-86 Identities = 617/898 (69%), Gaps = 13/898 (1%) Strand=Plus/Minus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || ||||| | ||||| || | | ||| || | ||||||||||||||| ||| Sbjct 2591969 GACATCACACCCATCCTCTGATACTCGCCTAGTCTCTTCTTAAAGAAGTTAGTTTTGCCT 2591910 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATT-TATTGACATAAACACTTTATCACA 13684 |||| ||| || || |||||||| ||||||||||| | | | ||| ||| | | | Sbjct 2591909 TCCAATGAAATGTTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTGA-A 2591851 Query 13685 ACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACA 13744 || || || | || | ||| || || | || ||||| || || ||||||| || Sbjct 2591850 GCCCAGCTCCAGTATGAGTCTGTCGGCCACGAATTCAATGTACTGCTTCATTAAAGTGCA 2591791 Query 13745 ATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACAC 13804 ||||| || || || || || || | || || | || || | |||||| || Sbjct 2591790 GTTCATCCCGATGAGATTCACTGGCAAGGCCTTTGTGAGGAACTCCTGTTCTATCCTGAC 2591731 Query 13805 AGCCTCTTTTATAATAATTGTAATAATCTCA--TTAGAAGGAGGATATTTTAGATGTTTA 13862 ||| | || ||| || | | |||| | ||||| || | |||||||| Sbjct 2591730 AGCATTGACAATTATATTTCTCTGACTCTCTGCTCCGAAGGTTTATGTAGCAGATGTTTG 2591671 Query 13863 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 13922 || ||||||||||||||||||||||| || ||||||||||| ||||| || || || ||| Sbjct 2591670 AACATTAAACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTCATTCGAA 2591611 Query 13923 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCG 13982 ||||| | || ||||||| ||||||||| || | ||| ||||| | ||||| || || Sbjct 2591610 AATGTAAGACCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCA 2591551 Query 13983 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTT 14042 |||||||| ||||| |||||||| ||||| |||| || | ||||||| | |||| | Sbjct 2591550 GAAAAGAAGATTCCTTCAACTGCTGCAAAGGCTACTACACATTCTCCATGGGTGGCTTCT 2591491 Query 14043 TTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCA 14102 |||| | ||||| ||||| || | || || || | | || |||||| ||| Sbjct 2591490 TTGTCCCCAATCCAACACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCA 2591431 Query 14103 ATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAG 14162 ||||| || || | ||||| ||||||| | | | || ||| ||||| || || | Sbjct 2591430 ATAGCGTTGAAGAGGAATTCCCTCTCTTTGGAATCTTTAACGTAAGTATCGATGAGGAGA 2591371 Query 14163 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCT 14222 || |||||||||||||||||||||||||| || ||||| || ||||| || || | ||| Sbjct 2591370 CTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCAGGCT 2591311 Query 14223 TCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14282 || | || ||||| | ||| | || |||| |||||| | ||||| |||||| Sbjct 2591310 TCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCACTCACTATGCCATCA 2591251 Query 14283 CTAGCTGCAAAAAATGCCA--ATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTT 14340 || ||||| || || |||| | ||| | ||||| ||| ||| ||| || || Sbjct 2591250 CTGGCTGCGAAGAAAGCCAGGACATGGGAT--ATAAAATATCTCTCCTCAGGTTTCAGGG 2591193 Query 14341 TTTTCCAA---TCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAG 14397 ||| | |||| ||| | ||||| || || || ||| |||||||||| | Sbjct 2591192 GCCTCCCAGTGCTGGAT--GTCCCTGGAAAGGTCCACCTCCTCAGCTGTCCAAAATGAGG 2591135 Query 14398 CGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14455 | | || || |||||||| ||| || || | ||| || ||||| | ||||| Sbjct 2591134 CCTCGGCCTTCTTATACATCTGCCAGATATCATGGTATTCGATGGGAAAGATGACAAA 2591077 >seq602 Length=1640730 Score = 331 bits (366), Expect = 9e-86 Identities = 635/928 (68%), Gaps = 15/928 (2%) Strand=Plus/Plus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || |||||||| | | ||| || | ||||| || ||||||||||||||| ||| Sbjct 122150 GACATCACGCCCATCCTCTAATACTCGCCTACTCTCTT---AAAGAAGTTAGTTTTGCCT 122206 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAA 13685 |||| ||| || || |||||||| ||||||||||| | | || ||||| | Sbjct 122207 TCCAATGAAATGTTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACTTTGCTGAAG 122266 Query 13686 CCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13745 || || || | || | ||| || || | || ||| | || || ||||||| ||| Sbjct 122267 CCCAGCTCCAGTATAAGTCTGTCCGCCACGAATTCAGTGTACTGCTTCATTAAAGTGCAA 122326 Query 13746 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 13805 ||||| || || || |||| || | | || | || || | |||||| ||| Sbjct 122327 TTCATCCCGATGAGATTTATTGGCAAGGCCTCTGTAAGGAACTCCTGTTCTATCCTGACA 122386 Query 13806 GCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAA 13865 || | || || | | | ||| | ||||| || | |||||||| || Sbjct 122387 GCATTGACGATTATTTCTCTGACTCTCTGCTCCGAAGGTTTATGTAGCAGATGTTTGAAC 122446 Query 13866 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 13925 ||||| ||||||||||||||||| || ||||||||||| ||||| ||| | || |||||| Sbjct 122447 ATTAA-CACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGTGCATTCGAAAAT 122505 Query 13926 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAA 13985 || | || ||||||||||||||||| || | ||| ||||| | ||||| || | ||| Sbjct 122506 GTAAGACCAGGCATCAATCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACTAGAA 122565 Query 13986 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTG 14045 ||||| ||||| || ||||| ||||| |||| || | ||||||| | | |||| |||| Sbjct 122566 AAGAAGATTCCTTCCACTGCTGCAAAGGCTACTACACATTCTCCATAGGTGGCTTCTTTG 122625 Query 14046 TTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATA 14105 | | ||||| | ||||| || | || || || | | || |||||| |||||| Sbjct 122626 TCCCCAATCCAATGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATA 122685 Query 14106 GCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA 14165 || || || | ||||| ||||||| | | | |||||| ||||| || || | || Sbjct 122686 GCGTTGAAGAGGAATTCCCTCTCTTTGGAATGTTTAATGTAAGTATCGATGAGGAGACTG 122745 Query 14166 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCC 14225 |||||||||||||||||||||||||| || ||||| || ||||| || || | ||||| Sbjct 122746 TACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCAGGCTTCT 122805 Query 14226 GACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14285 | || ||||| | ||| | | |||| |||||||| ||||| |||||||| Sbjct 122806 GTAATCTGAACTTCTTGGCTAAACCGCTTCACCAAGTTTTCATTCACTATTCCATCACTG 122865 Query 14286 GCTGCAAAAAATGCCA--ATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTT 14343 || || ||||| || | | ||| | ||||| ||| ||| ||| || || | Sbjct 122866 GCCGCGAAAAAAGCAAGCACATGGGAT--ATAAAATATCTCTCCTCAGGTTTCAGGGCCT 122923 Query 14344 TCCAAT--CGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGAC 14401 ||| | |||| ||||| ||||| || || || ||| |||||||||| || | Sbjct 122924 CCCAGTGCTGGAT--GTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAATGAGGCCTC 122981 Query 14402 AGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC-TCG 14460 || || |||||||| ||| || || | ||| || ||||| | ||||| | || Sbjct 122982 GGCCTTCTTATACATCTGCCAGATATCATGGTATTTGATGGGAAAGATGACAAAGCGACG 123041 Query 14461 AAGATG--TTTCTTTAAGAATTGGTTCC 14486 | || ||||| | |||| ||| ||| Sbjct 123042 GTGGTGGTTTTCTCTCAGAAGTGGCTCC 123069 >seq418 Length=2079112 Score = 318 bits (352), Expect = 6e-82 Identities = 639/936 (68%), Gaps = 25/936 (3%) Strand=Plus/Plus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || | |||||| | ||||| || | ||||| || ||||||||||||||||| ||| Sbjct 761069 GACATCATGCCCATCCTCTGATACTCCCCTACTCTCTTCTCAAAGAAGTTAGTTTTGCCT 761128 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATT-TATTGACATAAACACTTTATCACA 13684 |||| ||| || || |||||||| ||||||||||| | | | ||| ||| | | | Sbjct 761129 TCCAATGAAATGTTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTGA-A 761187 Query 13685 ACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACA 13744 || || || | || | ||| || || | ||| ||||| || || ||||||| || Sbjct 761188 GCCCAGCTCCAGTATAAGTCTGTCCGCCACAAATTCAATGTACTGCTTCATTAAAGTGCA 761247 Query 13745 ATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACAC 13804 ||||| || || || || || || | | || | || || | |||||| || Sbjct 761248 GTTCATCCCGATGAGATTCACTGGCAAGGCCTCTGTGAGGAACTCCTGTTCTATCCTGAC 761307 Query 13805 AGCCTCTTTTATAATAATTGTAATAA---TCTCATTAGAAGGAGGATATTTTAGATGTTT 13861 || | | | ||| ||| | | ||| | |||| || | |||||||| Sbjct 761308 TGCAT---TGACAATTATTTCTCTGACTCTCTGCTCCAAAGGTTTATGTACCAGATGTTT 761364 Query 13862 AAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGA 13921 || ||||||||||||||||||||||| || ||||||||||| ||||| || | || || Sbjct 761365 GAACATTAAACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTTATTCGA 761424 Query 13922 AAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCC 13981 |||||| | || ||||||||||||||||| || | ||| ||||| | ||||| || || Sbjct 761425 AAATGTAAGACCAGGCATCAATCCTCGTTTCTTAAGCCAGAATATGGATGCAAAAGAACC 761484 Query 13982 GGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTT 14041 ||| |||| ||||| || ||||| ||| ||| || |||||||| | | |||| Sbjct 761485 AGAATAGAAGATTCCTTCCACTGCTCTAAAGGCTCCTACATGTTCTCCATAGGTGGCTTC 761544 Query 14042 TTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTC 14101 ||||| | ||||| ||||| || | || || || | | || |||||| || Sbjct 761545 TTTGTCCCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTC 761604 Query 14102 AATAGCATTAAATAAATATTCCTTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTA 14160 |||||| || || | ||||| ||||||| | | ||| || ||||| || || | Sbjct 761605 AATAGCGTTGAAGAGGAATTCCCTCTCTTTGGAATCTT------TAAGTATCGATGAGGA 761658 Query 14161 AGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAG 14220 || |||||||||||||||||||||||||| || ||||| || ||||| || || || | Sbjct 761659 GACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCTGG 761718 Query 14221 CTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCAT 14280 |||| | || ||||| | ||| | || | || |||||||| ||||| |||| Sbjct 761719 CTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACAAAGTTTTCATTCACTATGCCAT 761778 Query 14281 CACTAGCTGCAAAAAATGCCA--ATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAG 14338 |||| || || || || |||| | ||| | ||||| ||| ||| ||| || || Sbjct 761779 CACTGGCCGCGAAGAAAGCCAGCACATGGGAT--ATAAAATATCTCTCCTCAGGTTTCAG 761836 Query 14339 TTTTTTCCAAT--CGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTA 14396 | ||| | |||| ||||| ||||| || || || ||| ||||||||| | Sbjct 761837 GGCCTCCCAGTGCTGGAT--GTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAGTGAA 761894 Query 14397 GCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA- 14455 || | ||||| |||||||| ||| || || | ||| || ||||| | ||||| Sbjct 761895 GCCTCGGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATGGGAAAGATGACAAAG 761954 Query 14456 TCTCGAAGATGTTTCTTTAAGAATTGGTTCCATTTT 14491 | || | | ||||| | || | ||| ||| |||| Sbjct 761955 TGACGGGGGT-TTTCTCTCAGGAGTGGCTCCTTTTT 761989 >seq446 Length=2046506 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||| || || ||||||||||| | || ||||||| ||||||||| | Sbjct 492610 CCTCATCTCTGCTAATTAGCTCATTTGAAAATGTAAGACCAGGCATCAGTCCTCGTTTCT 492551 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| || || |||||||| ||||| || ||||| ||||| | Sbjct 492550 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAGG 492491 Query 14014 CTATTAATCGTTCTCC 14029 ||| || |||||||| Sbjct 492490 CTACTACACGTTCTCC 492475 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || |||||||| | ||||| || | ||||| || ||||||||||||||||| ||| Sbjct 493894 GACATCACGCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTTTTGCCT 493835 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATT 13660 |||| ||| || || |||||||| ||||||||||| Sbjct 493834 TCCAATGAAATGTTCTCCATAAAGTCAAATGGATT 493800 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 14125 TCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 14184 ||||||| | | | |||||| ||||| || || | || ||||||||||||||||||| Sbjct 489528 TCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAGTGTATGT 489469 Query 14185 TTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTC 14224 ||||||| || ||||| || ||||| || || | ||||| Sbjct 489468 TTTCCATGGCAATCTGGAAGCCATAGAAACAGCGGGCTTC 489429 >seq34 Length=7729394 Score = 93.3 bits (102), Expect = 4e-14 Identities = 225/340 (66%), Gaps = 27/340 (8%) Strand=Plus/Minus Query 13854 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13913 |||||||| || || ||| | ||||| | |||||| || ||||||||||| || Sbjct 4966371 AGATGTTTGAACATCAAATATGCAAAGTGACAATGGAGTCCCTCATCTCT--------GT 4966320 Query 13914 TCGTTTGAAAA-TGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC 13972 || || ||||| ||| | || | |||||||| || ||| || || | ||||| | || Sbjct 4966319 TCATTGGAAAAATGTAAGACCAGACATCAATCTTCATTTCTTGAATGAGAATATGGATGC 4966260 Query 13973 AAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAA 14032 ||| || || | ||||||||||| || | || ||||| |||| || ||||||| Sbjct 4966259 AAAAGAACCAGGAAAGAATATTCTTTCCATAGCTGCAAAAGCTACTACATATTCTCCA-- 4966202 Query 14033 CGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATC 14092 ||||| | | ||| | ||||| || | ||| ||| ||| || Sbjct 4966201 ------TTTTTGGCCCCCAATCAAACACAAGGCCCAGTCTGCTTTCTTT---ATACAAGA 4966151 Query 14093 CATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTA-CTTGAAATGTATGTAT 14151 |||||| ||||||| || || || | ||||||| | | ||| ||| ||| Sbjct 4966150 CATTGTCTCAATAGTGTTGAAAGGGAATGTCCTCTCTTTGGAATCTTTAAA------TAT 4966097 Query 14152 CAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCAT 14191 || || | |||| |||||||| ||| |||||||||| Sbjct 4966096 TGATGAGGAGATTATATATTTCAGAATGTTTGTTTTCCAT 4966057 >seq956 Length=748348 Score = 86.0 bits (94), Expect = 6e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || ||| |||| | ||| | || | ||||| || ||||||||||||||||| ||| Sbjct 286099 GACATCACGGCCATCCTCTGAAACTCGCCTACTCTCTTCTCAAAGAAGTTAGTTTTGCCT 286158 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATT 13660 |||| ||| || || |||||||| ||||||||||| Sbjct 286159 TCCAATGAAATGTTCTCCATAAAGTCAAATGGATT 286193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479693201730200