Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq602 307 1e-78 seq30 306 4e-78 seq418 291 8e-74 seq446 120 3e-22 seq34 86.0 6e-12 >seq602 Length=1640730 Score = 307 bits (340), Expect = 1e-78 Identities = 634/933 (68%), Gaps = 25/933 (3%) Strand=Plus/Plus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || |||||||| | | ||| || | ||||| || ||| ||||||||||| ||| Sbjct 122150 GACATCACGCCCATCCTCTAATACTCGCCTACTCTCTT---AAAGAAGTTAGTTTTGCCT 122206 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA 13473 |||| ||| || || |||||||| || |||||||| | | || ||||| | Sbjct 122207 TCCAATGAAATGTTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACTTTGCTGAAG 122266 Query 13474 CCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13533 || || || | || | ||| || || | || ||| | || || ||||||| ||| Sbjct 122267 CCCAGCTCCAGTATAAGTCTGTCCGCCACGAATTCAGTGTACTGCTTCATTAAAGTGCAA 122326 Query 13534 TTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACA 13593 ||||| || || || |||| || | | || | || || | |||||| ||| Sbjct 122327 TTCATCCCGATGAGATTTATTGGCAAGGCCTCTGTAAGGAACTCCTGTTCTATCCTGACA 122386 Query 13594 GCCT---CGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTA 13650 || | || |||| | ||| | | | | | ||||| || | |||||||| Sbjct 122387 GCATTGACGATTAT--TTCTCTGACTC-TCTGCTCCGAAGGTTTATGTAGCAGATGTTTG 122443 Query 13651 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 13710 || ||||| ||||||||||||||||| || ||||||||||| ||||| ||| | || ||| Sbjct 122444 AACATTAA-CACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGTGCATTCGAA 122502 Query 13711 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCG 13770 ||||| | || ||||||||||||||||| || | ||| ||||| | || || || | Sbjct 122503 AATGTAAGACCAGGCATCAATCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACTA 122562 Query 13771 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTT 13830 |||||||| ||||| || ||||| ||||| |||| || | ||||||| | | |||| | Sbjct 122563 GAAAAGAAGATTCCTTCCACTGCTGCAAAGGCTACTACACATTCTCCATAGGTGGCTTCT 122622 Query 13831 TTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCG 13890 |||| ||||| | ||||| || | || || || | | || |||||| || Sbjct 122623 TTGTCCCCAATCCAATGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCA 122682 Query 13891 ATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAG 13950 || || ||||| | |||| ||||||| | | | |||||| ||||| || || | Sbjct 122683 ATAGCGTTGAAGAGGAATTCCCTCTCTTTGGAATGTTTAATGTAAGTATCGATGAGGAGA 122742 Query 13951 CTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCT 14010 || ||||||||||||||||||||||| || || ||||| || ||||| ||||| | ||| Sbjct 122743 CTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCAGGCT 122802 Query 14011 TCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCA 14070 |||| || || || | ||| | | ||||||||||||| || || |||||| Sbjct 122803 TCTGTAATCTGAACTTCTTGGCTAAACCGCTTCACCAAGTTTTCATTCACTATTCCATCA 122862 Query 14071 CTAGCTGCAAAAAATGCCA--ATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTT 14128 || || || ||||| || | | ||| | ||||| ||| ||| ||| || || Sbjct 122863 CTGGCCGCGAAAAAAGCAAGCACATGGGAT--ATAAAATATCTCTCCTCAGGTTTCAGGG 122920 Query 14129 TTTTCCAATCGGCT--AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGC 14186 | ||| | ||| | ||||| ||||| || || || ||| |||||||||| || Sbjct 122921 CCTCCCAGT--GCTGGATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAATGAGGC 122978 Query 14187 GACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT 14246 | || || |||||||| ||| || || | ||| || ||||| | ||||| | Sbjct 122979 CTCGGCCTTCTTATACATCTGCCAGATATCATGGTATTTGATGGGAAAGATGACAAAGC- 123037 Query 14247 TGAAGATG-----TTTCTTTAAGAATTGGCTCC 14274 || | || ||||| | |||| ||||||| Sbjct 123038 -GACGGTGGTGGTTTTCTCTCAGAAGTGGCTCC 123069 >seq30 Length=8517879 Score = 306 bits (338), Expect = 4e-78 Identities = 612/898 (68%), Gaps = 13/898 (1%) Strand=Plus/Minus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || ||||| | ||||| || | | ||| || | ||| ||||||||||| ||| Sbjct 2591969 GACATCACACCCATCCTCTGATACTCGCCTAGTCTCTTCTTAAAGAAGTTAGTTTTGCCT 2591910 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATT-TGTTGACATAAACACTTTATCACA 13472 |||| ||| || || |||||||| || |||||||| | | | ||| ||| | | | Sbjct 2591909 TCCAATGAAATGTTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTGA-A 2591851 Query 13473 ACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACA 13532 || || || | || | ||| || || | || ||||| || || ||||||| || Sbjct 2591850 GCCCAGCTCCAGTATGAGTCTGTCGGCCACGAATTCAATGTACTGCTTCATTAAAGTGCA 2591791 Query 13533 ATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACAC 13592 ||||| || || || || || || | || || | || || | |||||| || Sbjct 2591790 GTTCATCCCGATGAGATTCACTGGCAAGGCCTTTGTGAGGAACTCCTGTTCTATCCTGAC 2591731 Query 13593 AGCCTCGT---TTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTT 13649 ||| | | ||||| | ||| | | | | | ||||| || | |||||||| Sbjct 2591730 AGCATTGACAATTATATTTCTCTGACTC-TCTGCTCCGAAGGTTTATGTAGCAGATGTTT 2591672 Query 13650 AAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGA 13709 || ||||||||||||||||||||||| || ||||||||||| ||||| || || || || Sbjct 2591671 GAACATTAAACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTCATTCGA 2591612 Query 13710 AAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCC 13769 |||||| | || ||||||| ||||||||| || | ||| ||||| | || || || || Sbjct 2591611 AAATGTAAGACCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACC 2591552 Query 13770 GGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTT 13829 |||||||| ||||| |||||||| ||||| |||| || | ||||||| | |||| Sbjct 2591551 AGAAAAGAAGATTCCTTCAACTGCTGCAAAGGCTACTACACATTCTCCATGGGTGGCTTC 2591492 Query 13830 TTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTC 13889 ||||| ||||| ||||| || | || || || | | || |||||| || Sbjct 2591491 TTTGTCCCCAATCCAACACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTC 2591432 Query 13890 GATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAA 13949 || || ||||| | |||| ||||||| | | | || ||| ||||| || || | Sbjct 2591431 AATAGCGTTGAAGAGGAATTCCCTCTCTTTGGAATCTTTAACGTAAGTATCGATGAGGAG 2591372 Query 13950 GCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGC 14009 || ||||||||||||||||||||||| || || ||||| || ||||| ||||| | || Sbjct 2591371 ACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCAGGC 2591312 Query 14010 TTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATC 14069 ||||| || || || | ||| | || ||||||||||| | || || ||||| Sbjct 2591311 TTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCACTCACTATGCCATC 2591252 Query 14070 ACTAGCTGCAAAAAATGCCA--ATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT 14127 ||| ||||| || || |||| | ||| | ||||| ||| ||| ||| || || Sbjct 2591251 ACTGGCTGCGAAGAAAGCCAGGACATGGGAT--ATAAAATATCTCTCCTCAGGTTTCAGG 2591194 Query 14128 TTTTTCCAATCGGCT--AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAG 14185 ||| | ||| | ||| | ||||| || || || ||| |||||||||| | Sbjct 2591193 GGCCTCCCA-GTGCTGGATGTCCCTGGAAAGGTCCACCTCCTCAGCTGTCCAAAATGAGG 2591135 Query 14186 CGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14243 | | || || |||||||| ||| || || | ||| || ||||| | ||||| Sbjct 2591134 CCTCGGCCTTCTTATACATCTGCCAGATATCATGGTATTCGATGGGAAAGATGACAAA 2591077 >seq418 Length=2079112 Score = 291 bits (322), Expect = 8e-74 Identities = 633/935 (68%), Gaps = 23/935 (2%) Strand=Plus/Plus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || | |||||| | ||||| || | ||||| || ||||| ||||||||||| ||| Sbjct 761069 GACATCATGCCCATCCTCTGATACTCCCCTACTCTCTTCTCAAAGAAGTTAGTTTTGCCT 761128 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATT-TGTTGACATAAACACTTTATCACA 13472 |||| ||| || || |||||||| || |||||||| | | | ||| ||| | | | Sbjct 761129 TCCAATGAAATGTTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTGA-A 761187 Query 13473 ACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACA 13532 || || || | || | ||| || || | ||| ||||| || || ||||||| || Sbjct 761188 GCCCAGCTCCAGTATAAGTCTGTCCGCCACAAATTCAATGTACTGCTTCATTAAAGTGCA 761247 Query 13533 ATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACAC 13592 ||||| || || || || || || | | || | || || | |||||| || Sbjct 761248 GTTCATCCCGATGAGATTCACTGGCAAGGCCTCTGTGAGGAACTCCTGTTCTATCCTGAC 761307 Query 13593 AGCCTCGTTTATAATAA-TCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAA 13651 || | | || || ||| | | | | | |||| || | |||||||| | Sbjct 761308 TGCATTGACAATTATTTCTCTGACTC-TCTGCTCCAAAGGTTTATGTACCAGATGTTTGA 761366 Query 13652 AAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAA 13711 | ||||||||||||||||||||||| || ||||||||||| ||||| || | || |||| Sbjct 761367 ACATTAAACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTTATTCGAAA 761426 Query 13712 ATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGG 13771 |||| | || ||||||||||||||||| || | ||| ||||| | || || || || | Sbjct 761427 ATGTAAGACCAGGCATCAATCCTCGTTTCTTAAGCCAGAATATGGATGCAAAAGAACCAG 761486 Query 13772 AAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTT 13831 || |||| ||||| || ||||| ||| ||| || |||||||| | | |||| || Sbjct 761487 AATAGAAGATTCCTTCCACTGCTCTAAAGGCTCCTACATGTTCTCCATAGGTGGCTTCTT 761546 Query 13832 TGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGA 13891 ||| ||||| ||||| || | || || || | | || |||||| || | Sbjct 761547 TGTCCCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAA 761606 Query 13892 TTGCATTGAATAAATGTTCCTTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAG 13950 | || ||||| | |||| ||||||| | | ||| || ||||| || || | Sbjct 761607 TAGCGTTGAAGAGGAATTCCCTCTCTTTGGAATCTT------TAAGTATCGATGAGGAGA 761660 Query 13951 CTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCT 14010 || ||||||||||||||||||||||| || || ||||| || ||||| ||||| || ||| Sbjct 761661 CTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCTGGCT 761720 Query 14011 TCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCA 14070 |||| || || || | ||| | || | ||||||||||| || || |||||| Sbjct 761721 TCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACAAAGTTTTCATTCACTATGCCATCA 761780 Query 14071 CTAGCTGCAAAAAATGCCA--ATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTT 14128 || || || || || |||| | ||| | ||||| ||| ||| ||| || || Sbjct 761781 CTGGCCGCGAAGAAAGCCAGCACATGGGAT--ATAAAATATCTCTCCTCAGGTTTCAGGG 761838 Query 14129 TTTTCCAATCGGCT--AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGC 14186 | ||| | ||| | ||||| ||||| || || || ||| ||||||||| ||| Sbjct 761839 CCTCCCAGT--GCTGGATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAGTGAAGC 761896 Query 14187 GACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT 14246 | ||||| |||||||| ||| || || | ||| || ||||| | ||||| Sbjct 761897 CTCGGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATGGGAAAGATGACAAA--G 761954 Query 14247 TGAAGATG--TTTCTTTAAGAATTGGCTCCATTTT 14279 ||| | | ||||| | || | ||||||| |||| Sbjct 761955 TGACGGGGGTTTTCTCTCAGGAGTGGCTCCTTTTT 761989 >seq446 Length=2046506 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||||| || || ||||||||||| | || ||||||| ||||||||| | Sbjct 492610 CCTCATCTCTGCTAATTAGCTCATTTGAAAATGTAAGACCAGGCATCAGTCCTCGTTTCT 492551 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||| | || || || || |||||||| ||||| || ||||| ||||| | Sbjct 492550 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAGG 492491 Query 13802 CTATTAGTCGTTCTCC 13817 ||| || |||||||| Sbjct 492490 CTACTACACGTTCTCC 492475 Score = 86.0 bits (94), Expect = 6e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 13913 TCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 13972 ||||||| | | | |||||| ||||| || || | || ||||||||||||||||||| Sbjct 489528 TCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAGTGTATGT 489469 Query 13973 TTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14014 |||| || || ||||| || ||||| ||||| | ||||||| Sbjct 489468 TTTCCATGGCAATCTGGAAGCCATAGAAACAGCGGGCTTCTG 489427 Score = 86.0 bits (94), Expect = 6e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || |||||||| | ||||| || | ||||| || ||||| ||||||||||| ||| Sbjct 493894 GACATCACGCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTTTTGCCT 493835 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATT 13448 |||| ||| || || |||||||| || |||||||| Sbjct 493834 TCCAATGAAATGTTCTCCATAAAGTCAAATGGATT 493800 >seq34 Length=7729394 Score = 86.0 bits (94), Expect = 6e-12 Identities = 126/178 (71%), Gaps = 9/178 (5%) Strand=Plus/Minus Query 13642 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13701 |||||||| || || ||| | ||||| | |||||| || ||||||||||| || Sbjct 4966371 AGATGTTTGAACATCAAATATGCAAAGTGACAATGGAGTCCCTCATCTCT--------GT 4966320 Query 13702 TCGTTTGAAAA-TGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC 13760 || || ||||| ||| | || | |||||||| || ||| || || | ||||| | || Sbjct 4966319 TCATTGGAAAAATGTAAGACCAGACATCAATCTTCATTTCTTGAATGAGAATATGGATGC 4966260 Query 13761 GAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCA 13818 || || || | ||||||||||| || | || ||||| |||| || ||||||| Sbjct 4966259 AAAAGAACCAGGAAAGAATATTCTTTCCATAGCTGCAAAAGCTACTACATATTCTCCA 4966202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478554084364920