Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq602 307 1e-78
seq30 306 4e-78
seq418 291 8e-74
seq446 120 3e-22
seq34 86.0 6e-12
>seq602
Length=1640730
Score = 307 bits (340), Expect = 1e-78
Identities = 634/933 (68%), Gaps = 25/933 (3%)
Strand=Plus/Plus
Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413
|| || |||||||| | | ||| || | ||||| || ||| ||||||||||| |||
Sbjct 122150 GACATCACGCCCATCCTCTAATACTCGCCTACTCTCTT---AAAGAAGTTAGTTTTGCCT 122206
Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA 13473
|||| ||| || || |||||||| || |||||||| | | || ||||| |
Sbjct 122207 TCCAATGAAATGTTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACTTTGCTGAAG 122266
Query 13474 CCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13533
|| || || | || | ||| || || | || ||| | || || ||||||| |||
Sbjct 122267 CCCAGCTCCAGTATAAGTCTGTCCGCCACGAATTCAGTGTACTGCTTCATTAAAGTGCAA 122326
Query 13534 TTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACA 13593
||||| || || || |||| || | | || | || || | |||||| |||
Sbjct 122327 TTCATCCCGATGAGATTTATTGGCAAGGCCTCTGTAAGGAACTCCTGTTCTATCCTGACA 122386
Query 13594 GCCT---CGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTA 13650
|| | || |||| | ||| | | | | | ||||| || | ||||||||
Sbjct 122387 GCATTGACGATTAT--TTCTCTGACTC-TCTGCTCCGAAGGTTTATGTAGCAGATGTTTG 122443
Query 13651 AAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 13710
|| ||||| ||||||||||||||||| || ||||||||||| ||||| ||| | || |||
Sbjct 122444 AACATTAA-CACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGTGCATTCGAA 122502
Query 13711 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCG 13770
||||| | || ||||||||||||||||| || | ||| ||||| | || || || |
Sbjct 122503 AATGTAAGACCAGGCATCAATCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACTA 122562
Query 13771 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTT 13830
|||||||| ||||| || ||||| ||||| |||| || | ||||||| | | |||| |
Sbjct 122563 GAAAAGAAGATTCCTTCCACTGCTGCAAAGGCTACTACACATTCTCCATAGGTGGCTTCT 122622
Query 13831 TTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCG 13890
|||| ||||| | ||||| || | || || || | | || |||||| ||
Sbjct 122623 TTGTCCCCAATCCAATGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCA 122682
Query 13891 ATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAG 13950
|| || ||||| | |||| ||||||| | | | |||||| ||||| || || |
Sbjct 122683 ATAGCGTTGAAGAGGAATTCCCTCTCTTTGGAATGTTTAATGTAAGTATCGATGAGGAGA 122742
Query 13951 CTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCT 14010
|| ||||||||||||||||||||||| || || ||||| || ||||| ||||| | |||
Sbjct 122743 CTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCAGGCT 122802
Query 14011 TCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCA 14070
|||| || || || | ||| | | ||||||||||||| || || ||||||
Sbjct 122803 TCTGTAATCTGAACTTCTTGGCTAAACCGCTTCACCAAGTTTTCATTCACTATTCCATCA 122862
Query 14071 CTAGCTGCAAAAAATGCCA--ATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTT 14128
|| || || ||||| || | | ||| | ||||| ||| ||| ||| || ||
Sbjct 122863 CTGGCCGCGAAAAAAGCAAGCACATGGGAT--ATAAAATATCTCTCCTCAGGTTTCAGGG 122920
Query 14129 TTTTCCAATCGGCT--AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGC 14186
| ||| | ||| | ||||| ||||| || || || ||| |||||||||| ||
Sbjct 122921 CCTCCCAGT--GCTGGATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAATGAGGC 122978
Query 14187 GACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT 14246
| || || |||||||| ||| || || | ||| || ||||| | ||||| |
Sbjct 122979 CTCGGCCTTCTTATACATCTGCCAGATATCATGGTATTTGATGGGAAAGATGACAAAGC- 123037
Query 14247 TGAAGATG-----TTTCTTTAAGAATTGGCTCC 14274
|| | || ||||| | |||| |||||||
Sbjct 123038 -GACGGTGGTGGTTTTCTCTCAGAAGTGGCTCC 123069
>seq30
Length=8517879
Score = 306 bits (338), Expect = 4e-78
Identities = 612/898 (68%), Gaps = 13/898 (1%)
Strand=Plus/Minus
Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413
|| || || ||||| | ||||| || | | ||| || | ||| ||||||||||| |||
Sbjct 2591969 GACATCACACCCATCCTCTGATACTCGCCTAGTCTCTTCTTAAAGAAGTTAGTTTTGCCT 2591910
Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATT-TGTTGACATAAACACTTTATCACA 13472
|||| ||| || || |||||||| || |||||||| | | | ||| ||| | | |
Sbjct 2591909 TCCAATGAAATGTTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTGA-A 2591851
Query 13473 ACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACA 13532
|| || || | || | ||| || || | || ||||| || || ||||||| ||
Sbjct 2591850 GCCCAGCTCCAGTATGAGTCTGTCGGCCACGAATTCAATGTACTGCTTCATTAAAGTGCA 2591791
Query 13533 ATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACAC 13592
||||| || || || || || || | || || | || || | |||||| ||
Sbjct 2591790 GTTCATCCCGATGAGATTCACTGGCAAGGCCTTTGTGAGGAACTCCTGTTCTATCCTGAC 2591731
Query 13593 AGCCTCGT---TTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTT 13649
||| | | ||||| | ||| | | | | | ||||| || | ||||||||
Sbjct 2591730 AGCATTGACAATTATATTTCTCTGACTC-TCTGCTCCGAAGGTTTATGTAGCAGATGTTT 2591672
Query 13650 AAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGA 13709
|| ||||||||||||||||||||||| || ||||||||||| ||||| || || || ||
Sbjct 2591671 GAACATTAAACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTCATTCGA 2591612
Query 13710 AAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCC 13769
|||||| | || ||||||| ||||||||| || | ||| ||||| | || || || ||
Sbjct 2591611 AAATGTAAGACCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACC 2591552
Query 13770 GGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTT 13829
|||||||| ||||| |||||||| ||||| |||| || | ||||||| | ||||
Sbjct 2591551 AGAAAAGAAGATTCCTTCAACTGCTGCAAAGGCTACTACACATTCTCCATGGGTGGCTTC 2591492
Query 13830 TTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTC 13889
||||| ||||| ||||| || | || || || | | || |||||| ||
Sbjct 2591491 TTTGTCCCCAATCCAACACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTC 2591432
Query 13890 GATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAA 13949
|| || ||||| | |||| ||||||| | | | || ||| ||||| || || |
Sbjct 2591431 AATAGCGTTGAAGAGGAATTCCCTCTCTTTGGAATCTTTAACGTAAGTATCGATGAGGAG 2591372
Query 13950 GCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGC 14009
|| ||||||||||||||||||||||| || || ||||| || ||||| ||||| | ||
Sbjct 2591371 ACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCAGGC 2591312
Query 14010 TTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATC 14069
||||| || || || | ||| | || ||||||||||| | || || |||||
Sbjct 2591311 TTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCACTCACTATGCCATC 2591252
Query 14070 ACTAGCTGCAAAAAATGCCA--ATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT 14127
||| ||||| || || |||| | ||| | ||||| ||| ||| ||| || ||
Sbjct 2591251 ACTGGCTGCGAAGAAAGCCAGGACATGGGAT--ATAAAATATCTCTCCTCAGGTTTCAGG 2591194
Query 14128 TTTTTCCAATCGGCT--AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAG 14185
||| | ||| | ||| | ||||| || || || ||| |||||||||| |
Sbjct 2591193 GGCCTCCCA-GTGCTGGATGTCCCTGGAAAGGTCCACCTCCTCAGCTGTCCAAAATGAGG 2591135
Query 14186 CGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14243
| | || || |||||||| ||| || || | ||| || ||||| | |||||
Sbjct 2591134 CCTCGGCCTTCTTATACATCTGCCAGATATCATGGTATTCGATGGGAAAGATGACAAA 2591077
>seq418
Length=2079112
Score = 291 bits (322), Expect = 8e-74
Identities = 633/935 (68%), Gaps = 23/935 (2%)
Strand=Plus/Plus
Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413
|| || | |||||| | ||||| || | ||||| || ||||| ||||||||||| |||
Sbjct 761069 GACATCATGCCCATCCTCTGATACTCCCCTACTCTCTTCTCAAAGAAGTTAGTTTTGCCT 761128
Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATT-TGTTGACATAAACACTTTATCACA 13472
|||| ||| || || |||||||| || |||||||| | | | ||| ||| | | |
Sbjct 761129 TCCAATGAAATGTTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTGA-A 761187
Query 13473 ACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACA 13532
|| || || | || | ||| || || | ||| ||||| || || ||||||| ||
Sbjct 761188 GCCCAGCTCCAGTATAAGTCTGTCCGCCACAAATTCAATGTACTGCTTCATTAAAGTGCA 761247
Query 13533 ATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACAC 13592
||||| || || || || || || | | || | || || | |||||| ||
Sbjct 761248 GTTCATCCCGATGAGATTCACTGGCAAGGCCTCTGTGAGGAACTCCTGTTCTATCCTGAC 761307
Query 13593 AGCCTCGTTTATAATAA-TCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAA 13651
|| | | || || ||| | | | | | |||| || | |||||||| |
Sbjct 761308 TGCATTGACAATTATTTCTCTGACTC-TCTGCTCCAAAGGTTTATGTACCAGATGTTTGA 761366
Query 13652 AAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAA 13711
| ||||||||||||||||||||||| || ||||||||||| ||||| || | || ||||
Sbjct 761367 ACATTAAACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTTATTCGAAA 761426
Query 13712 ATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGG 13771
|||| | || ||||||||||||||||| || | ||| ||||| | || || || || |
Sbjct 761427 ATGTAAGACCAGGCATCAATCCTCGTTTCTTAAGCCAGAATATGGATGCAAAAGAACCAG 761486
Query 13772 AAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTT 13831
|| |||| ||||| || ||||| ||| ||| || |||||||| | | |||| ||
Sbjct 761487 AATAGAAGATTCCTTCCACTGCTCTAAAGGCTCCTACATGTTCTCCATAGGTGGCTTCTT 761546
Query 13832 TGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGA 13891
||| ||||| ||||| || | || || || | | || |||||| || |
Sbjct 761547 TGTCCCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAA 761606
Query 13892 TTGCATTGAATAAATGTTCCTTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAG 13950
| || ||||| | |||| ||||||| | | ||| || ||||| || || |
Sbjct 761607 TAGCGTTGAAGAGGAATTCCCTCTCTTTGGAATCTT------TAAGTATCGATGAGGAGA 761660
Query 13951 CTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCT 14010
|| ||||||||||||||||||||||| || || ||||| || ||||| ||||| || |||
Sbjct 761661 CTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCTGGCT 761720
Query 14011 TCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCA 14070
|||| || || || | ||| | || | ||||||||||| || || ||||||
Sbjct 761721 TCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACAAAGTTTTCATTCACTATGCCATCA 761780
Query 14071 CTAGCTGCAAAAAATGCCA--ATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTT 14128
|| || || || || |||| | ||| | ||||| ||| ||| ||| || ||
Sbjct 761781 CTGGCCGCGAAGAAAGCCAGCACATGGGAT--ATAAAATATCTCTCCTCAGGTTTCAGGG 761838
Query 14129 TTTTCCAATCGGCT--AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGC 14186
| ||| | ||| | ||||| ||||| || || || ||| ||||||||| |||
Sbjct 761839 CCTCCCAGT--GCTGGATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAGTGAAGC 761896
Query 14187 GACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT 14246
| ||||| |||||||| ||| || || | ||| || ||||| | |||||
Sbjct 761897 CTCGGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATGGGAAAGATGACAAA--G 761954
Query 14247 TGAAGATG--TTTCTTTAAGAATTGGCTCCATTTT 14279
||| | | ||||| | || | ||||||| ||||
Sbjct 761955 TGACGGGGGTTTTCTCTCAGGAGTGGCTCCTTTTT 761989
>seq446
Length=2046506
Score = 120 bits (132), Expect = 3e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741
|||||||||| ||||| || || ||||||||||| | || ||||||| ||||||||| |
Sbjct 492610 CCTCATCTCTGCTAATTAGCTCATTTGAAAATGTAAGACCAGGCATCAGTCCTCGTTTCT 492551
Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801
| | ||| ||||| | || || || || |||||||| ||||| || ||||| ||||| |
Sbjct 492550 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAGG 492491
Query 13802 CTATTAGTCGTTCTCC 13817
||| || ||||||||
Sbjct 492490 CTACTACACGTTCTCC 492475
Score = 86.0 bits (94), Expect = 6e-12
Identities = 80/102 (78%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 13913 TCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 13972
||||||| | | | |||||| ||||| || || | || |||||||||||||||||||
Sbjct 489528 TCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAGTGTATGT 489469
Query 13973 TTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14014
|||| || || ||||| || ||||| ||||| | |||||||
Sbjct 489468 TTTCCATGGCAATCTGGAAGCCATAGAAACAGCGGGCTTCTG 489427
Score = 86.0 bits (94), Expect = 6e-12
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413
|| || |||||||| | ||||| || | ||||| || ||||| ||||||||||| |||
Sbjct 493894 GACATCACGCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTTTTGCCT 493835
Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATT 13448
|||| ||| || || |||||||| || ||||||||
Sbjct 493834 TCCAATGAAATGTTCTCCATAAAGTCAAATGGATT 493800
>seq34
Length=7729394
Score = 86.0 bits (94), Expect = 6e-12
Identities = 126/178 (71%), Gaps = 9/178 (5%)
Strand=Plus/Minus
Query 13642 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13701
|||||||| || || ||| | ||||| | |||||| || ||||||||||| ||
Sbjct 4966371 AGATGTTTGAACATCAAATATGCAAAGTGACAATGGAGTCCCTCATCTCT--------GT 4966320
Query 13702 TCGTTTGAAAA-TGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC 13760
|| || ||||| ||| | || | |||||||| || ||| || || | ||||| | ||
Sbjct 4966319 TCATTGGAAAAATGTAAGACCAGACATCAATCTTCATTTCTTGAATGAGAATATGGATGC 4966260
Query 13761 GAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCA 13818
|| || || | ||||||||||| || | || ||||| |||| || |||||||
Sbjct 4966259 AAAAGAACCAGGAAAGAATATTCTTTCCATAGCTGCAAAAGCTACTACATATTCTCCA 4966202
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478554084364920
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