Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq418 298 5e-76
seq30 295 6e-75
seq602 279 4e-70
seq446 129 5e-25
seq92 120 3e-22
>seq418
Length=2079112
Score = 298 bits (330), Expect = 5e-76
Identities = 595/873 (68%), Gaps = 25/873 (3%)
Strand=Plus/Plus
Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922
||||| || | ||||| || ||||| ||||| ||||| ||||| || ||||| || |||
Sbjct 761087 TGATACTCCCCTACTCTCTTCTCAAAGAAGTTAGTTTTGCCTTCCAATGAAATGTTCTCC 761146
Query 12923 ATAAAATCGAAAGGATTTT----TCGAACAATAGTATTTTTTACACCCTAATTCTAGTAA 12978
||||| || || ||||| | || | || || | | || | || ||||
Sbjct 761147 ATAAAGTCAAATGGATTCTCTACTCTGAAAACC----TTGCTGAAGCCCAGCTCCAGTAT 761202
Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038
| |||||| || ||||| || |||||||| ||||||||| |||||||| || || |
Sbjct 761203 AAGTCTGTCCGCCACAAATTCAATGTACTGCTTCATTAAAGTGCAGTTCATCCCGATGAG 761262
Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098
|| || |||| || ||||| | || | | |||||| ||||| | || || |||
Sbjct 761263 ATTCACTGGCAAGGCCTCTGTGAGGAACTCCTGTTCTATCCTGACTGCATTGACAATTAT 761322
Query 13099 GTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAA 13158
||||| | | | ||| || || || | ||||| || ||||| | ||| |||||
Sbjct 761323 TTCTCTGACTCTCTGCTCCAAAGGTTTATGTACCAGATGTTTGAACATTAAACACGCAAA 761382
Query 13159 ATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCAT 13218
|||||| || | ||| |||||||| || ||||||| || |||||||| ||||| |||||
Sbjct 761383 ATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTTATTCGAAAATGTAAGACCAGGCAT 761442
Query 13219 AAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTC 13278
| |||||||| |||| ||| ||||| | ||||| ||||| ||| | || ||||||||
Sbjct 761443 CAATCCTCGTTTCTTAAGCCAGAATATGGATGCAAAAGAACCAGAATAGAAGATTCCTTC 761502
Query 13279 AACTGCTGCAAACGCTATCAACCT-TTCACCATACGTACTATTTTTACTCTCTATCCACT 13337
|||||| ||| ||| | || | ||| ||||| || | ||| | | |||||
Sbjct 761503 CACTGCTCTAAAGGCT-CCTACATGTTCTCCATAGGTGGCTTCTTTGTCCCCAATCCAGC 761561
Query 13338 TTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAAT 13397
|||||| | ||| || | || || || ||| | || || ||||| || |
Sbjct 761562 GCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGAAGAGGA 761621
Query 13398 AAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAAT 13457
| || ||| || | || | |||||||| || | | || |||||||| || |
Sbjct 761622 A-----TTCCCTCTCTTTGGAATCTTTAAGTATCGATGAGGAGACTGTACATTTCAGAGT 761676
Query 13458 GAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTT 13517
| || |||||||| || || ||||| ||||| ||||| || || |||| | ||||||||
Sbjct 761677 GTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCTGGCTTCTGTAATCTGAACTT 761736
Query 13518 CGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaG 13577
| | ||| | || | |||||||| || ||||| || ||||| || || || ||||
Sbjct 761737 CTTGGCTAAACCGCTCCACAAAGTTTTCATTCACTATGCCATCACTGGCCGCGAAGAAAG 761796
Query 13578 CAAGTATGTGCTTAATAAAttttttttC----GTTTTCTGACAACTTTAACCAAT-CTGG 13632
| || | || ||||| | | | || | |||| | || ||| | ||||
Sbjct 761797 CCAGCACATGGGATATAAAATATCTCTCCTCAGGTTTCAG-GGCCT---CCCAGTGCTGG 761852
Query 13633 AAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATA 13692
| || || || | || ||||||||| | ||||||| ||||| | || ||||||||
Sbjct 761853 -ATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAGTGAAGCCTCGGCTTTCTTATA 761911
Query 13693 CATCATCCATATATCCTTATAAACAATGGGAAA 13725
|||| ||| ||||| | || | ||||||||
Sbjct 761912 CATCTGCCAAATATCATGGTATTCGATGGGAAA 761944
>seq30
Length=8517879
Score = 295 bits (326), Expect = 6e-75
Identities = 605/894 (68%), Gaps = 19/894 (2%)
Strand=Plus/Minus
Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902
||||||| ||| ||| | ||||| |||| | ||| || | ||| ||||| ||||| |
Sbjct 2591971 TTGACATCACACCCATCCTCTGATACTCGCCTAGTCTCTTCTTAAAGAAGTTAGTTTTGC 2591912
Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT----TCGAACAATAGTATTTT 12958
|||| || ||||| || |||||||| || || ||||| | || | || ||
Sbjct 2591911 CTTCCAATGAAATGTTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACC----TTG 2591856
Query 12959 TTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAA 13018
| | || | || |||| | |||||| || || || || |||||||| |||||||||
Sbjct 2591855 CTGAAGCCCAGCTCCAGTATGAGTCTGTCGGCCACGAATTCAATGTACTGCTTCATTAAA 2591796
Query 13019 TCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATA 13078
|||||||| || || | || || |||| || | ||| | || | | ||||||
Sbjct 2591795 GTGCAGTTCATCCCGATGAGATTCACTGGCAAGGCCTTTGTGAGGAACTCCTGTTCTATC 2591736
Query 13079 TCAACTGCTTCGATAACTATGT--CTCTTATTACGTTCTCTAATGGAGGATTTGATAGAT 13136
|| || | || || ||| | |||| | | | ||| | || || | ||||
Sbjct 2591735 CTGACAGCATTGACAATTATATTTCTCTGACTCTCTGCTCCGAAGGTTTATGTAGCAGAT 2591676
Query 13137 GCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGT 13196
| || ||||| | ||| ||||||||||| || | ||| |||||||| || |||||||| |
Sbjct 2591675 GTTTGAACATTAAACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTCAT 2591616
Query 13197 TTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACG 13256
| |||||||| ||||| ||||| || |||||||| || | ||| ||||| | ||||| |
Sbjct 2591615 TCGAAAATGTAAGACCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAG 2591556
Query 13257 AACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTAC 13316
|||| ||||| || |||||||||||||||||||| |||| | | ||| |||| ||
Sbjct 2591555 AACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAGGCTACTACACATTCTCCATGGGTGG 2591496
Query 13317 TATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATAT 13376
| ||| | | ||||| |||||| | ||| || | || || || |||
Sbjct 2591495 CTTCTTTGTCCCCAATCCAACACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTG 2591436
Query 13377 TTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCA 13436
| || || ||||| || | | | | || || ||| || |||||||| || |
Sbjct 2591435 TCTCAATAGCGTTGAAGAGGAATTCCCTCTCTTTGGAATCTTTAACGTAAGTATCGATGA 2591376
Query 13437 ATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATC 13496
| || |||||||| || || || |||||||| || || ||||| ||||| ||||| |
Sbjct 2591375 GGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGC 2591316
Query 13497 TAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCC 13556
|| |||| | ||||||||| | ||| | || | |||||||| | ||||| |
Sbjct 2591315 AGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCACTCACTATGC 2591256
Query 13557 CGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttC----GTTTTCT 13612
| ||||| || || || ||||| || | || ||||| | | | || | ||||
Sbjct 2591255 CATCACTGGCTGCGAAGAAAGCCAGGACATGGGATATAAAATATCTCTCCTCAGGTTTCA 2591196
Query 13613 GACAACTTTAACCAAT-CTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAA 13671
| || ||| | |||| | || | || | || ||||||||| | ||||||||
Sbjct 2591195 GGGGCCT---CCCAGTGCTGG-ATGTCCCTGGAAAGGTCCACCTCCTCAGCTGTCCAAAA 2591140
Query 13672 AGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAA 13725
|| || | ||||||||||||||| ||| ||||| | || | ||||||||
Sbjct 2591139 TGAGGCCTCGGCCTTCTTATACATCTGCCAGATATCATGGTATTCGATGGGAAA 2591086
>seq602
Length=1640730
Score = 279 bits (308), Expect = 4e-70
Identities = 604/894 (68%), Gaps = 26/894 (3%)
Strand=Plus/Plus
Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902
||||||| || ||| | | ||| |||| ||||| || ||| ||||| ||||| |
Sbjct 122148 TTGACATCACGCCCATCCTCTAATACTCGCCTACTCTCTT---AAAGAAGTTAGTTTTGC 122204
Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT----TCGAACAATAGTATTTT 12958
|||| || ||||| || |||||||| || || ||||| | || | || |||
Sbjct 122205 CTTCCAATGAAATGTTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAAC----TTTG 122260
Query 12959 TTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAA 13018
| | || | || |||| | |||||| || || || || ||||||| |||||||||
Sbjct 122261 CTGAAGCCCAGCTCCAGTATAAGTCTGTCCGCCACGAATTCAGTGTACTGCTTCATTAAA 122320
Query 13019 TCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATA 13078
|| ||||| || || | |||| |||| || ||||| | || | | ||||||
Sbjct 122321 GTGCAATTCATCCCGATGAGATTTATTGGCAAGGCCTCTGTAAGGAACTCCTGTTCTATC 122380
Query 13079 TCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGC 13138
|| || | || | ||| ||||| | | | ||| | || || | |||||
Sbjct 122381 CTGACAGCATTGACGATTATTTCTCTGACTCTCTGCTCCGAAGGTTTATGTAGCAGATGT 122440
Query 13139 TTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTT 13198
|| ||||| | ||| ||||||||||| || | ||| |||||||| || ||||| | ||
Sbjct 122441 TTGAACATTA-ACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGTGCATTC 122499
Query 13199 GAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAA 13258
|||||||| ||||| ||||| | |||||||| || | ||| ||||| | ||||| |||
Sbjct 122500 GAAAATGTAAGACCAGGCATCAATCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAA 122559
Query 13259 CCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTA 13318
| ||||| || |||||||| ||||||||||| |||| | | ||| ||||| ||
Sbjct 122560 CTAGAAAAGAAGATTCCTTCCACTGCTGCAAAGGCTACTACACATTCTCCATAGGTGGCT 122619
Query 13319 TTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTT 13378
| ||| | | ||||| | |||||| | ||| || | || || || ||| |
Sbjct 122620 TCTTTGTCCCCAATCCAATGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTC 122679
Query 13379 TCTATTGCGTTAAATAAATAAtttttttCCTT--ACTGTCTAAAATATAAGTATCTATCA 13436
|| || ||||| || | | | | || || | ||| | ||| |||||||| || |
Sbjct 122680 TCAATAGCGTTGAAGAGGAATTCCCTCTCTTTGGAATGTTT--AATGTAAGTATCGATGA 122737
Query 13437 ATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATC 13496
| || |||||||| || || || |||||||| || || ||||| ||||| ||||| |
Sbjct 122738 GGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGC 122797
Query 13497 TAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCC 13556
|| |||| | ||||||||| | ||| | | | |||||||| || ||||| |
Sbjct 122798 AGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTTCACCAAGTTTTCATTCACTATTC 122857
Query 13557 CGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttC----GTTTTCT 13612
| ||||| || || ||||||||||| | || ||||| | | | || | ||||
Sbjct 122858 CATCACTGGCCGCGAAAAAAGCAAGCACATGGGATATAAAATATCTCTCCTCAGGTTTCA 122917
Query 13613 GACAACTTTAACCAAT-CTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAA 13671
| || ||| | |||| | || || || | || ||||||||| | ||||||||
Sbjct 122918 G-GGCCT---CCCAGTGCTGG-ATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAA 122972
Query 13672 AGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAA 13725
|| || | ||||||||||||||| ||| ||||| | || ||||||||
Sbjct 122973 TGAGGCCTCGGCCTTCTTATACATCTGCCAGATATCATGGTATTTGATGGGAAA 123026
>seq446
Length=2046506
Score = 129 bits (142), Expect = 5e-25
Identities = 101/121 (83%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234
|||||||| || |||||||| ||||||||||| ||||| ||||| || |||||||| ||
Sbjct 492608 TCATCTCTGCTAATTAGCTCATTTGAAAATGTAAGACCAGGCATCAGTCCTCGTTTCTTG 492549
Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294
| ||| ||||| | ||||| ||||| ||||| || |||||||| ||||||||||| |||
Sbjct 492548 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAGGCT 492489
Query 13295 A 13295
|
Sbjct 492488 A 492488
>seq92
Length=5367877
Score = 120 bits (132), Expect = 3e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232
|||||||||| || || ||||| || ||||| || || || ||||| || |||| |||||
Sbjct 3850916 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTTTTTT 3850857
Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292
| | ||||||||||||||| || || || ||||| || |||||||| || || || || |
Sbjct 3850856 TTAGCCAAAATATAGCAGCGAAAGATCCTGAAAAGAAAATTCCTTCTACAGCAGCGAAGG 3850797
Query 13293 CTATCAACCTTTCACC 13308
||| || |||||| ||
Sbjct 3850796 CTACCACCCTTTCCCC 3850781
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430951919173806
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