Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq418 298 5e-76 seq30 295 6e-75 seq602 279 4e-70 seq446 129 5e-25 seq92 120 3e-22 >seq418 Length=2079112 Score = 298 bits (330), Expect = 5e-76 Identities = 595/873 (68%), Gaps = 25/873 (3%) Strand=Plus/Plus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || | ||||| || ||||| ||||| ||||| ||||| || ||||| || ||| Sbjct 761087 TGATACTCCCCTACTCTCTTCTCAAAGAAGTTAGTTTTGCCTTCCAATGAAATGTTCTCC 761146 Query 12923 ATAAAATCGAAAGGATTTT----TCGAACAATAGTATTTTTTACACCCTAATTCTAGTAA 12978 ||||| || || ||||| | || | || || | | || | || |||| Sbjct 761147 ATAAAGTCAAATGGATTCTCTACTCTGAAAACC----TTGCTGAAGCCCAGCTCCAGTAT 761202 Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038 | |||||| || ||||| || |||||||| ||||||||| |||||||| || || | Sbjct 761203 AAGTCTGTCCGCCACAAATTCAATGTACTGCTTCATTAAAGTGCAGTTCATCCCGATGAG 761262 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098 || || |||| || ||||| | || | | |||||| ||||| | || || ||| Sbjct 761263 ATTCACTGGCAAGGCCTCTGTGAGGAACTCCTGTTCTATCCTGACTGCATTGACAATTAT 761322 Query 13099 GTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAA 13158 ||||| | | | ||| || || || | ||||| || ||||| | ||| ||||| Sbjct 761323 TTCTCTGACTCTCTGCTCCAAAGGTTTATGTACCAGATGTTTGAACATTAAACACGCAAA 761382 Query 13159 ATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCAT 13218 |||||| || | ||| |||||||| || ||||||| || |||||||| ||||| ||||| Sbjct 761383 ATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTTATTCGAAAATGTAAGACCAGGCAT 761442 Query 13219 AAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTC 13278 | |||||||| |||| ||| ||||| | ||||| ||||| ||| | || |||||||| Sbjct 761443 CAATCCTCGTTTCTTAAGCCAGAATATGGATGCAAAAGAACCAGAATAGAAGATTCCTTC 761502 Query 13279 AACTGCTGCAAACGCTATCAACCT-TTCACCATACGTACTATTTTTACTCTCTATCCACT 13337 |||||| ||| ||| | || | ||| ||||| || | ||| | | ||||| Sbjct 761503 CACTGCTCTAAAGGCT-CCTACATGTTCTCCATAGGTGGCTTCTTTGTCCCCAATCCAGC 761561 Query 13338 TTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAAT 13397 |||||| | ||| || | || || || ||| | || || ||||| || | Sbjct 761562 GCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGAAGAGGA 761621 Query 13398 AAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAAT 13457 | || ||| || | || | |||||||| || | | || |||||||| || | Sbjct 761622 A-----TTCCCTCTCTTTGGAATCTTTAAGTATCGATGAGGAGACTGTACATTTCAGAGT 761676 Query 13458 GAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTT 13517 | || |||||||| || || ||||| ||||| ||||| || || |||| | |||||||| Sbjct 761677 GTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCTGGCTTCTGTAATCTGAACTT 761736 Query 13518 CGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaG 13577 | | ||| | || | |||||||| || ||||| || ||||| || || || |||| Sbjct 761737 CTTGGCTAAACCGCTCCACAAAGTTTTCATTCACTATGCCATCACTGGCCGCGAAGAAAG 761796 Query 13578 CAAGTATGTGCTTAATAAAttttttttC----GTTTTCTGACAACTTTAACCAAT-CTGG 13632 | || | || ||||| | | | || | |||| | || ||| | |||| Sbjct 761797 CCAGCACATGGGATATAAAATATCTCTCCTCAGGTTTCAG-GGCCT---CCCAGTGCTGG 761852 Query 13633 AAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATA 13692 | || || || | || ||||||||| | ||||||| ||||| | || |||||||| Sbjct 761853 -ATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAGTGAAGCCTCGGCTTTCTTATA 761911 Query 13693 CATCATCCATATATCCTTATAAACAATGGGAAA 13725 |||| ||| ||||| | || | |||||||| Sbjct 761912 CATCTGCCAAATATCATGGTATTCGATGGGAAA 761944 >seq30 Length=8517879 Score = 295 bits (326), Expect = 6e-75 Identities = 605/894 (68%), Gaps = 19/894 (2%) Strand=Plus/Minus Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902 ||||||| ||| ||| | ||||| |||| | ||| || | ||| ||||| ||||| | Sbjct 2591971 TTGACATCACACCCATCCTCTGATACTCGCCTAGTCTCTTCTTAAAGAAGTTAGTTTTGC 2591912 Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT----TCGAACAATAGTATTTT 12958 |||| || ||||| || |||||||| || || ||||| | || | || || Sbjct 2591911 CTTCCAATGAAATGTTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACC----TTG 2591856 Query 12959 TTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAA 13018 | | || | || |||| | |||||| || || || || |||||||| ||||||||| Sbjct 2591855 CTGAAGCCCAGCTCCAGTATGAGTCTGTCGGCCACGAATTCAATGTACTGCTTCATTAAA 2591796 Query 13019 TCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATA 13078 |||||||| || || | || || |||| || | ||| | || | | |||||| Sbjct 2591795 GTGCAGTTCATCCCGATGAGATTCACTGGCAAGGCCTTTGTGAGGAACTCCTGTTCTATC 2591736 Query 13079 TCAACTGCTTCGATAACTATGT--CTCTTATTACGTTCTCTAATGGAGGATTTGATAGAT 13136 || || | || || ||| | |||| | | | ||| | || || | |||| Sbjct 2591735 CTGACAGCATTGACAATTATATTTCTCTGACTCTCTGCTCCGAAGGTTTATGTAGCAGAT 2591676 Query 13137 GCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGT 13196 | || ||||| | ||| ||||||||||| || | ||| |||||||| || |||||||| | Sbjct 2591675 GTTTGAACATTAAACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTCAT 2591616 Query 13197 TTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACG 13256 | |||||||| ||||| ||||| || |||||||| || | ||| ||||| | ||||| | Sbjct 2591615 TCGAAAATGTAAGACCGGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAG 2591556 Query 13257 AACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTAC 13316 |||| ||||| || |||||||||||||||||||| |||| | | ||| |||| || Sbjct 2591555 AACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAGGCTACTACACATTCTCCATGGGTGG 2591496 Query 13317 TATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATAT 13376 | ||| | | ||||| |||||| | ||| || | || || || ||| Sbjct 2591495 CTTCTTTGTCCCCAATCCAACACAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTG 2591436 Query 13377 TTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCA 13436 | || || ||||| || | | | | || || ||| || |||||||| || | Sbjct 2591435 TCTCAATAGCGTTGAAGAGGAATTCCCTCTCTTTGGAATCTTTAACGTAAGTATCGATGA 2591376 Query 13437 ATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATC 13496 | || |||||||| || || || |||||||| || || ||||| ||||| ||||| | Sbjct 2591375 GGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGC 2591316 Query 13497 TAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCC 13556 || |||| | ||||||||| | ||| | || | |||||||| | ||||| | Sbjct 2591315 AGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCACTCACTATGC 2591256 Query 13557 CGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttC----GTTTTCT 13612 | ||||| || || || ||||| || | || ||||| | | | || | |||| Sbjct 2591255 CATCACTGGCTGCGAAGAAAGCCAGGACATGGGATATAAAATATCTCTCCTCAGGTTTCA 2591196 Query 13613 GACAACTTTAACCAAT-CTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAA 13671 | || ||| | |||| | || | || | || ||||||||| | |||||||| Sbjct 2591195 GGGGCCT---CCCAGTGCTGG-ATGTCCCTGGAAAGGTCCACCTCCTCAGCTGTCCAAAA 2591140 Query 13672 AGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAA 13725 || || | ||||||||||||||| ||| ||||| | || | |||||||| Sbjct 2591139 TGAGGCCTCGGCCTTCTTATACATCTGCCAGATATCATGGTATTCGATGGGAAA 2591086 >seq602 Length=1640730 Score = 279 bits (308), Expect = 4e-70 Identities = 604/894 (68%), Gaps = 26/894 (3%) Strand=Plus/Plus Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902 ||||||| || ||| | | ||| |||| ||||| || ||| ||||| ||||| | Sbjct 122148 TTGACATCACGCCCATCCTCTAATACTCGCCTACTCTCTT---AAAGAAGTTAGTTTTGC 122204 Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT----TCGAACAATAGTATTTT 12958 |||| || ||||| || |||||||| || || ||||| | || | || ||| Sbjct 122205 CTTCCAATGAAATGTTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAAC----TTTG 122260 Query 12959 TTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAA 13018 | | || | || |||| | |||||| || || || || ||||||| ||||||||| Sbjct 122261 CTGAAGCCCAGCTCCAGTATAAGTCTGTCCGCCACGAATTCAGTGTACTGCTTCATTAAA 122320 Query 13019 TCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATA 13078 || ||||| || || | |||| |||| || ||||| | || | | |||||| Sbjct 122321 GTGCAATTCATCCCGATGAGATTTATTGGCAAGGCCTCTGTAAGGAACTCCTGTTCTATC 122380 Query 13079 TCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGC 13138 || || | || | ||| ||||| | | | ||| | || || | ||||| Sbjct 122381 CTGACAGCATTGACGATTATTTCTCTGACTCTCTGCTCCGAAGGTTTATGTAGCAGATGT 122440 Query 13139 TTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTT 13198 || ||||| | ||| ||||||||||| || | ||| |||||||| || ||||| | || Sbjct 122441 TTGAACATTA-ACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGTGCATTC 122499 Query 13199 GAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAA 13258 |||||||| ||||| ||||| | |||||||| || | ||| ||||| | ||||| ||| Sbjct 122500 GAAAATGTAAGACCAGGCATCAATCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAA 122559 Query 13259 CCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTA 13318 | ||||| || |||||||| ||||||||||| |||| | | ||| ||||| || Sbjct 122560 CTAGAAAAGAAGATTCCTTCCACTGCTGCAAAGGCTACTACACATTCTCCATAGGTGGCT 122619 Query 13319 TTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTT 13378 | ||| | | ||||| | |||||| | ||| || | || || || ||| | Sbjct 122620 TCTTTGTCCCCAATCCAATGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTC 122679 Query 13379 TCTATTGCGTTAAATAAATAAtttttttCCTT--ACTGTCTAAAATATAAGTATCTATCA 13436 || || ||||| || | | | | || || | ||| | ||| |||||||| || | Sbjct 122680 TCAATAGCGTTGAAGAGGAATTCCCTCTCTTTGGAATGTTT--AATGTAAGTATCGATGA 122737 Query 13437 ATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATC 13496 | || |||||||| || || || |||||||| || || ||||| ||||| ||||| | Sbjct 122738 GGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGC 122797 Query 13497 TAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCC 13556 || |||| | ||||||||| | ||| | | | |||||||| || ||||| | Sbjct 122798 AGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTTCACCAAGTTTTCATTCACTATTC 122857 Query 13557 CGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttC----GTTTTCT 13612 | ||||| || || ||||||||||| | || ||||| | | | || | |||| Sbjct 122858 CATCACTGGCCGCGAAAAAAGCAAGCACATGGGATATAAAATATCTCTCCTCAGGTTTCA 122917 Query 13613 GACAACTTTAACCAAT-CTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAA 13671 | || ||| | |||| | || || || | || ||||||||| | |||||||| Sbjct 122918 G-GGCCT---CCCAGTGCTGG-ATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAA 122972 Query 13672 AGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAA 13725 || || | ||||||||||||||| ||| ||||| | || |||||||| Sbjct 122973 TGAGGCCTCGGCCTTCTTATACATCTGCCAGATATCATGGTATTTGATGGGAAA 123026 >seq446 Length=2046506 Score = 129 bits (142), Expect = 5e-25 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 |||||||| || |||||||| ||||||||||| ||||| ||||| || |||||||| || Sbjct 492608 TCATCTCTGCTAATTAGCTCATTTGAAAATGTAAGACCAGGCATCAGTCCTCGTTTCTTG 492549 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||| ||||| | ||||| ||||| ||||| || |||||||| ||||||||||| ||| Sbjct 492548 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAGGCT 492489 Query 13295 A 13295 | Sbjct 492488 A 492488 >seq92 Length=5367877 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || ||||| || ||||| || || || ||||| || |||| ||||| Sbjct 3850916 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTTTTTT 3850857 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||||||||||||||| || || || ||||| || |||||||| || || || || | Sbjct 3850856 TTAGCCAAAATATAGCAGCGAAAGATCCTGAAAAGAAAATTCCTTCTACAGCAGCGAAGG 3850797 Query 13293 CTATCAACCTTTCACC 13308 ||| || |||||| || Sbjct 3850796 CTACCACCCTTTCCCC 3850781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430951919173806