Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq70 129 5e-25 seq195 113 4e-20 >seq70 Length=5737579 Score = 129 bits (142), Expect = 5e-25 Identities = 153/206 (74%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 128961 ATCAAAGAGCACGTTAACTCGCTGGGAGAAAAGCTCAAAACGCTGCGTCTTCGACTGCGT 129020 ||||| ||||| || ||||| ||||| ||||| || || || || | || | ||||| Sbjct 5258847 ATCAAGGAGCATGTGAACTCCCTGGGGGAAAAACTGAAGACCCTCAGGCTGAGGCTGCGA 5258788 Query 129021 CGCTGCCACCGCTTCCTGCCGTGTGAGAACAAGAGTAAGGCCGTGGAGCAAGTCAAACGC 129080 |||| || || ||| |||| ||||| || || || ||||| |||||| | || || Sbjct 5258787 TGCTGTCATCGATTCTTGCCCTGTGAAAATAAAAGCAAGGCAGTGGAGAAGGTGAAGGAT 5258728 Query 129081 GTGTTCAACATGCTGCAGGAACGAGGCGTTTACAAGGCCATGAGCGAGTTCGACATATTC 129140 | || | | ||| || || ||| |||||||| |||||||| ||||| ||||| || Sbjct 5258727 GCCTTTAGTAAGCTCCAAGAGAAAGGAGTTTACAAAGCCATGAGTGAGTT-GACATCTTT 5258669 Query 129141 ATCAACTACATAGAATCATACATGAC 129166 ||||||||||||||| | |||||||| Sbjct 5258668 ATCAACTACATAGAAACCTACATGAC 5258643 >seq195 Length=3676426 Score = 113 bits (124), Expect = 4e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 || ||||| || ||||| || | || |||||||| ||||||||| |||| ||||||||| Sbjct 364770 GGTTACCTGGGCTGCCAAGCGTTGTCAGAGATGATCCAGTTTTACCTGGAGGAGGTGATG 364829 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 || | || || || || || || |||||||| ||||| || ||||| ||||| ||||| Sbjct 364830 CCACGAGCTGAGAACCATGGCCCAGACATCAAGGAGCATGTGAACTCTCTGGGGGAAAAA 364889 Query 128994 CTCAAAACGCTGCGTCTTCGACTGCGTCGCTG 129025 || || || || | || | ||||| ||||| Sbjct 364890 CTGAAGACCCTCAGGCTGAGGCTGCGACGCTG 364921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447717921305360