Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_005336.1
Length=139962
Score E
Sequences producing significant alignments: (Bits) Value
seq70 129 5e-25
seq195 113 4e-20
>seq70
Length=5737579
Score = 129 bits (142), Expect = 5e-25
Identities = 153/206 (74%), Gaps = 1/206 (0%)
Strand=Plus/Minus
Query 128961 ATCAAAGAGCACGTTAACTCGCTGGGAGAAAAGCTCAAAACGCTGCGTCTTCGACTGCGT 129020
||||| ||||| || ||||| ||||| ||||| || || || || | || | |||||
Sbjct 5258847 ATCAAGGAGCATGTGAACTCCCTGGGGGAAAAACTGAAGACCCTCAGGCTGAGGCTGCGA 5258788
Query 129021 CGCTGCCACCGCTTCCTGCCGTGTGAGAACAAGAGTAAGGCCGTGGAGCAAGTCAAACGC 129080
|||| || || ||| |||| ||||| || || || ||||| |||||| | || ||
Sbjct 5258787 TGCTGTCATCGATTCTTGCCCTGTGAAAATAAAAGCAAGGCAGTGGAGAAGGTGAAGGAT 5258728
Query 129081 GTGTTCAACATGCTGCAGGAACGAGGCGTTTACAAGGCCATGAGCGAGTTCGACATATTC 129140
| || | | ||| || || ||| |||||||| |||||||| ||||| ||||| ||
Sbjct 5258727 GCCTTTAGTAAGCTCCAAGAGAAAGGAGTTTACAAAGCCATGAGTGAGTT-GACATCTTT 5258669
Query 129141 ATCAACTACATAGAATCATACATGAC 129166
||||||||||||||| | ||||||||
Sbjct 5258668 ATCAACTACATAGAAACCTACATGAC 5258643
>seq195
Length=3676426
Score = 113 bits (124), Expect = 4e-20
Identities = 116/152 (76%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933
|| ||||| || ||||| || | || |||||||| ||||||||| |||| |||||||||
Sbjct 364770 GGTTACCTGGGCTGCCAAGCGTTGTCAGAGATGATCCAGTTTTACCTGGAGGAGGTGATG 364829
Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993
|| | || || || || || || |||||||| ||||| || ||||| ||||| |||||
Sbjct 364830 CCACGAGCTGAGAACCATGGCCCAGACATCAAGGAGCATGTGAACTCTCTGGGGGAAAAA 364889
Query 128994 CTCAAAACGCTGCGTCTTCGACTGCGTCGCTG 129025
|| || || || | || | ||||| |||||
Sbjct 364890 CTGAAGACCCTCAGGCTGAGGCTGCGACGCTG 364921
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447717921305360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |