Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq70 134 1e-26 >seq70 Length=5737579 Score = 134 bits (148), Expect = 1e-26 Identities = 153/204 (75%), Gaps = 1/204 (0%) Strand=Plus/Minus Query 127249 ATAAAAGAACACGTCAATTCCCTGGGTGAAAAGCTGAAGACATTGAGACTTCGACTGCGT 127308 || || || || || || |||||||| ||||| |||||||| | || || | ||||| Sbjct 5258847 ATCAAGGAGCATGTGAACTCCCTGGGGGAAAAACTGAAGACCCTCAGGCTGAGGCTGCGA 5258788 Query 127309 CGCTGCCACCGCTTTCTCCCGTGCGAGAACAAGAGCAAGGCGGTGGAAAAGGTGAAGAGA 127368 |||| || || || | || || || || || |||||||| ||||| ||||||||| Sbjct 5258787 TGCTGTCATCGATTCTTGCCCTGTGAAAATAAAAGCAAGGCAGTGGAGAAGGTGAAGGAT 5258728 Query 127369 GTGTTCAGCGAGCTTCAGGAAAGAGGCGTGTACAAGGCCATGAGTGAGTTTGACATATTC 127428 | || || |||| || || | ||| || ||||| |||||||||||| ||||||| || Sbjct 5258727 GCCTTTAGTAAGCTCCAAGAGAAAGGAGTTTACAAAGCCATGAGTGAG-TTGACATCTTT 5258669 Query 127429 ATCAACTACATCGAGACTTACATG 127452 ||||||||||| || || |||||| Sbjct 5258668 ATCAACTACATAGAAACCTACATG 5258645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430023984805736