Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq110 96.9 2e-15 >seq110 Length=4795302 Score = 96.9 bits (106), Expect = 2e-15 Identities = 112/150 (75%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| || ||||||||||||||| || || || || | |||||| Sbjct 96642 GCGATCATGTAGGTGAGCAGTGCGTAGCTGGCGATGTTGAAAGGCACACCCAGGCCCATG 96583 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 | | || ||||||||||| | ||| || || ||||| ||| ||| || ||||| || Sbjct 96582 T-CTCCAGACCTCTGGTACAACTGGCAGGACAGCTCACCGTTCACCACATAGAACTGGCA 96524 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 | || || ||||||||| || || || || Sbjct 96523 GAGGGCGTGGCACGGAGGCAGGGCCATGAG 96494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340113544087119