Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq440 91.5 2e-13 >seq440 Length=2165802 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/202 (71%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 164500 TTAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACA 164559 ||||| || || ||| | ||||| || | || ||||||| || ||||| || ||||| Sbjct 492187 TTAGGTTGCAAGCATGTTAAAGGCATCCTGCTATATGGACCCCCAGGTTGTGGCAAAACT 492128 Query 164560 TTAATGGCTCGATGCATTGCTCAAGCTTTTAAATC---GCGACCCGTTAAAATTGTTAAT 164616 | |||||||| |||| ||| | |||||| | || || ||| | || ||| Sbjct 492127 CTCTTGGCTCGACAGATTGGA-AAGATGTTAAATGCAAGAGAACCC--AAAGTGGTCAAT 492071 Query 164617 GGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTT 164676 || || ||| | | ||||||||||| || |||||||| ||||| || | || | ||| Sbjct 492070 GGGCCAGAAATCCTTAACAAATATGTGGGAGAGTCAGAGGCTAACATTCGTAAACTCTTT 492011 Query 164677 CAGGAGGCTGAAGAAGAACAAA 164698 || |||||||||||||||| Sbjct 492010 GCCGATGCTGAAGAAGAACAAA 491989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595828776934800