Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq70 183 3e-41 seq195 129 6e-25 >seq70 Length=5737579 Score = 183 bits (202), Expect = 3e-41 Identities = 169/213 (79%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 10231 CAAAGAGCACGTGAACTCTCTGGGCGAGAATCTAAAGACCCTAAGGCTTCGCTTGCGCAG 10290 ||| ||||| |||||||| ||||| || || || |||||||| ||||| | |||| | Sbjct 5258845 CAAGGAGCATGTGAACTCCCTGGGGGAAAAACTGAAGACCCTCAGGCTGAGGCTGCGATG 5258786 Query 10291 GTGCCACAGGTTTCTCCCGTGTGAAAACAAGAGCAAGGCTGTGGAGCAGGTCAAGAATGC 10350 || || | || | || |||||||| || |||||||| |||||| |||| ||| |||| Sbjct 5258785 CTGTCATCGATTCTTGCCCTGTGAAAATAAAAGCAAGGCAGTGGAGAAGGTGAAGGATGC 5258726 Query 10351 CTTCAGCAAGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTAT 10410 ||| || ||||| || || |||||||| |||||||||||||||| | ||||||| ||||| Sbjct 5258725 CTTTAGTAAGCTCCAAGAGAAAGGAGTTTACAAAGCCATGAGTG-AGTTGACATCTTTAT 5258667 Query 10411 TAACTATATAGAAGCATACATGACCATGAAAAT 10443 ||||| |||||| | |||||||| ||||| || Sbjct 5258666 CAACTACATAGAAACCTACATGACAATGAAGAT 5258634 >seq195 Length=3676426 Score = 129 bits (142), Expect = 6e-25 Identities = 112/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || || |||| || ||||||||||||||||||||||| || | Sbjct 364768 AGGGTTACCTGGGCTGCCAAGCGTTGTCAGAGATGATCCAGTTTTACCTGGAGGAGGTGA 364827 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 |||||| ||||| || || | ||| || ||| ||||| |||||||||||||| || | Sbjct 364828 TGCCACGAGCTGAGAACCATGGCCCAGACATCAAGGAGCATGTGAACTCTCTGGGGGAAA 364887 Query 10260 ATCTAAAGACCCTAAGGCT 10278 | || |||||||| ||||| Sbjct 364888 AACTGAAGACCCTCAGGCT 364906 Score = 100 bits (110), Expect = 3e-16 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || |||||||| ||||||||||||||||| |||||||| ||||| ||||| | Sbjct 367493 AGCTCCAAGAGAAAGGAGTTTACAAAGCCATGAGTGAGTTTGACATCTTTATCAACTACA 367552 Query 10419 TAGAAGCATACATGACCATGAAAAT 10443 ||||| | |||||||| ||||| || Sbjct 367553 TAGAAACCTACATGACAATGAAGAT 367577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547339494481280