Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_006146.1
Length=171096
Score E
Sequences producing significant alignments: (Bits) Value
seq70 183 3e-41
seq195 129 6e-25
>seq70
Length=5737579
Score = 183 bits (202), Expect = 3e-41
Identities = 169/213 (79%), Gaps = 1/213 (0%)
Strand=Plus/Minus
Query 10231 CAAAGAGCACGTGAACTCTCTGGGCGAGAATCTAAAGACCCTAAGGCTTCGCTTGCGCAG 10290
||| ||||| |||||||| ||||| || || || |||||||| ||||| | |||| |
Sbjct 5258845 CAAGGAGCATGTGAACTCCCTGGGGGAAAAACTGAAGACCCTCAGGCTGAGGCTGCGATG 5258786
Query 10291 GTGCCACAGGTTTCTCCCGTGTGAAAACAAGAGCAAGGCTGTGGAGCAGGTCAAGAATGC 10350
|| || | || | || |||||||| || |||||||| |||||| |||| ||| ||||
Sbjct 5258785 CTGTCATCGATTCTTGCCCTGTGAAAATAAAAGCAAGGCAGTGGAGAAGGTGAAGGATGC 5258726
Query 10351 CTTCAGCAAGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTAT 10410
||| || ||||| || || |||||||| |||||||||||||||| | ||||||| |||||
Sbjct 5258725 CTTTAGTAAGCTCCAAGAGAAAGGAGTTTACAAAGCCATGAGTG-AGTTGACATCTTTAT 5258667
Query 10411 TAACTATATAGAAGCATACATGACCATGAAAAT 10443
||||| |||||| | |||||||| ||||| ||
Sbjct 5258666 CAACTACATAGAAACCTACATGACAATGAAGAT 5258634
>seq195
Length=3676426
Score = 129 bits (142), Expect = 6e-25
Identities = 112/139 (81%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199
|||| |||||||| || || || |||| || ||||||||||||||||||||||| || |
Sbjct 364768 AGGGTTACCTGGGCTGCCAAGCGTTGTCAGAGATGATCCAGTTTTACCTGGAGGAGGTGA 364827
Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259
|||||| ||||| || || | ||| || ||| ||||| |||||||||||||| || |
Sbjct 364828 TGCCACGAGCTGAGAACCATGGCCCAGACATCAAGGAGCATGTGAACTCTCTGGGGGAAA 364887
Query 10260 ATCTAAAGACCCTAAGGCT 10278
| || |||||||| |||||
Sbjct 364888 AACTGAAGACCCTCAGGCT 364906
Score = 100 bits (110), Expect = 3e-16
Identities = 73/85 (86%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418
|||| || || |||||||| ||||||||||||||||| |||||||| ||||| ||||| |
Sbjct 367493 AGCTCCAAGAGAAAGGAGTTTACAAAGCCATGAGTGAGTTTGACATCTTTATCAACTACA 367552
Query 10419 TAGAAGCATACATGACCATGAAAAT 10443
||||| | |||||||| ||||| ||
Sbjct 367553 TAGAAACCTACATGACAATGAAGAT 367577
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547339494481280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |