Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq216 132 7e-26
>seq216
Length=3482710
Score = 132 bits (146), Expect = 7e-26
Identities = 168/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 9632 TGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACA 9691
||||||| |||| | || ||| |||||||||||| || |||| || ||||| ||||
Sbjct 698577 TGGTCTGGAACAAACGCTCATCATCCCATTCTGGATGCTCCTGTTTAAGCACATCACACA 698518
Query 9692 CTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAA 9751
||||||| ||||||| ||||| || | || |||||||| || || ||||||| ||| |
Sbjct 698517 CTCTGTTATGTTCCCGTAGCCAAATGATGGCATACATCATCAGGCCTGGCACCATGCCGA 698458
Query 9752 AAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGT 9811
| |||| || || ||||| | | | | ||| || | | || || |||||||||
Sbjct 698457 AGACCTCATGCCCCACAGCAAAGTGTAGGTGTTCTGGGATATGTGGTGGGTAGATCATGG 698398
Query 9812 GCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862
||||| |||||||| | ||| || |||| ||| || ||||| ||||
Sbjct 698397 AGACCTGAGTGTCTTTGACTGTGGGAGGGTACACTTCTCCATCAATTATCT 698347
Score = 116 bits (128), Expect = 5e-21
Identities = 208/304 (68%), Gaps = 0/304 (0%)
Strand=Plus/Minus
Query 8673 GAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAG 8732
|||| | ||| | || || || || || || || || | |||| || |||||||| |
Sbjct 700353 GAACACTGAAGGTGGTAAAAGGGCAACCCTTCACATTATTGCAGATGAGGGACTGGATTG 700294
Query 8733 TTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAAC 8792
||| | || | ||| || || || ||||| || || ||||| |||||||||||
Sbjct 700293 AGGCAGTATTTATGATTTTGAAGCCTACTTCTCCACCAAAAGTGCTAGGTTTCCAGTAGT 700234
Query 8793 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGA 8852
| || || || || || |||| || ||||| ||||| || || || || | || |
Sbjct 700233 CAGGAGAACAAATAGGATTACCCATAAGTCCTTTTAGGGAGAATGGCGCTCCAATTTCTA 700174
Query 8853 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8912
||| ||||||| |||||||| | || || || ||||| |||| || | | ||||
Sbjct 700173 CCATGGTCTCACCAAAGATGGCATCTGGTCGTGGTTTTTCTACCAGGAGAGCAGGATACA 700114
Query 8913 ACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTC 8972
||||| || || ||||| || ||| || | || ||||| |||||||| ||||
Sbjct 700113 GCTCCATGGCATCAATGTCACCATAAGCTGCTTCCAACTCTGCAGCCATTTCCTTCTCTC 700054
Query 8973 CTGT 8976
||||
Sbjct 700053 CTGT 700050
Score = 102 bits (112), Expect = 1e-16
Identities = 141/196 (72%), Gaps = 1/196 (1%)
Strand=Plus/Minus
Query 10023 ATTGTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTC 10082
||||| |||||||| || |||| |||||| ||||| || || ||| | ||| |||
Sbjct 697195 ATTGT-CTTACCCCGTGGCCCAATCCTTTGGTGAAAGCTGGTCCTTTCTTATGATCTGTC 697137
Query 10083 CTAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGG 10142
| || ||||| || || || || ||| |||| ||||||||||| | || |||||||||
Sbjct 697136 TTGAAGAACTGATGGGTAAAGTGCTGGGCAAAGAAGGCAAACATCATATTTGTGCCCTGG 697077
Query 10143 GGATCGGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGC 10202
||||| ||| |||| | | | || ||| ||||||||||| | | | ||| ||
Sbjct 697076 GGATCAGGAATGAACTTTTTTCTTAGGAGAAACTTTTCCACAACTTCTTTTGAATCAGGA 697017
Query 10203 AGAttttttttACCTG 10218
|| | ||| || ||||
Sbjct 697016 AGCTCTTTCTTCCCTG 697001
Score = 95.1 bits (104), Expect = 2e-14
Identities = 181/264 (69%), Gaps = 2/264 (1%)
Strand=Plus/Minus
Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381
||||| | ||||||| |||| | |||| ||||| || | |||||||| || || |
Sbjct 699213 CTTACCCTGCCAGCTCTTTGCCTGCTGAAAGATTCAACAAACTGGGTAAGTCCATGTTCC 699154
Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATGTAGTCATACTTTGTTTTATCAATCTCA 9441
| | |||||||||||||| | ||| | ||||| || | |||||||| | |
Sbjct 699153 AGTAAGATGGAATTGTTGTAGAGGAACTGTTGGTAGTTGTATTCCTGGTTATCAATTTGA 699094
Query 9442 AACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGA 9501
| | || ||||| || | |||||||||||| | |||| ||||| ||| || ||
Sbjct 699093 AGGGTGTCAGGCATAAGGGGATGCCAGTGATAAAGGGTGTTGAACTCAGAAGCAATGCGG 699034
Query 9502 TTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGTG 9560
|||||||||||||| | | ||| ||||| || || | |||| | || ||||
Sbjct 699033 TTTTGGTACTGGAATTGCTGGTTGAAA-AGCAGCTCTGGATCAAACTTGAGCTTGAAGTT 698975
Query 9561 GTAGCCGCTGAGCTGCTGAACATA 9584
||||| || | ||||| |||||
Sbjct 698974 ATAGCCACTCAAATGCTGTACATA 698951
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708473405382320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |