Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq216 132 7e-26 >seq216 Length=3482710 Score = 132 bits (146), Expect = 7e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 9632 TGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACA 9691 ||||||| |||| | || ||| |||||||||||| || |||| || ||||| |||| Sbjct 698577 TGGTCTGGAACAAACGCTCATCATCCCATTCTGGATGCTCCTGTTTAAGCACATCACACA 698518 Query 9692 CTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAA 9751 ||||||| ||||||| ||||| || | || |||||||| || || ||||||| ||| | Sbjct 698517 CTCTGTTATGTTCCCGTAGCCAAATGATGGCATACATCATCAGGCCTGGCACCATGCCGA 698458 Query 9752 AAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGT 9811 | |||| || || ||||| | | | | ||| || | | || || ||||||||| Sbjct 698457 AGACCTCATGCCCCACAGCAAAGTGTAGGTGTTCTGGGATATGTGGTGGGTAGATCATGG 698398 Query 9812 GCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 ||||| |||||||| | ||| || |||| ||| || ||||| |||| Sbjct 698397 AGACCTGAGTGTCTTTGACTGTGGGAGGGTACACTTCTCCATCAATTATCT 698347 Score = 116 bits (128), Expect = 5e-21 Identities = 208/304 (68%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 8673 GAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAG 8732 |||| | ||| | || || || || || || || || | |||| || |||||||| | Sbjct 700353 GAACACTGAAGGTGGTAAAAGGGCAACCCTTCACATTATTGCAGATGAGGGACTGGATTG 700294 Query 8733 TTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAAC 8792 ||| | || | ||| || || || ||||| || || ||||| ||||||||||| Sbjct 700293 AGGCAGTATTTATGATTTTGAAGCCTACTTCTCCACCAAAAGTGCTAGGTTTCCAGTAGT 700234 Query 8793 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGA 8852 | || || || || || |||| || ||||| ||||| || || || || | || | Sbjct 700233 CAGGAGAACAAATAGGATTACCCATAAGTCCTTTTAGGGAGAATGGCGCTCCAATTTCTA 700174 Query 8853 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8912 ||| ||||||| |||||||| | || || || ||||| |||| || | | |||| Sbjct 700173 CCATGGTCTCACCAAAGATGGCATCTGGTCGTGGTTTTTCTACCAGGAGAGCAGGATACA 700114 Query 8913 ACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTC 8972 ||||| || || ||||| || ||| || | || ||||| |||||||| |||| Sbjct 700113 GCTCCATGGCATCAATGTCACCATAAGCTGCTTCCAACTCTGCAGCCATTTCCTTCTCTC 700054 Query 8973 CTGT 8976 |||| Sbjct 700053 CTGT 700050 Score = 102 bits (112), Expect = 1e-16 Identities = 141/196 (72%), Gaps = 1/196 (1%) Strand=Plus/Minus Query 10023 ATTGTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTC 10082 ||||| |||||||| || |||| |||||| ||||| || || ||| | ||| ||| Sbjct 697195 ATTGT-CTTACCCCGTGGCCCAATCCTTTGGTGAAAGCTGGTCCTTTCTTATGATCTGTC 697137 Query 10083 CTAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGG 10142 | || ||||| || || || || ||| |||| ||||||||||| | || ||||||||| Sbjct 697136 TTGAAGAACTGATGGGTAAAGTGCTGGGCAAAGAAGGCAAACATCATATTTGTGCCCTGG 697077 Query 10143 GGATCGGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGC 10202 ||||| ||| |||| | | | || ||| ||||||||||| | | | ||| || Sbjct 697076 GGATCAGGAATGAACTTTTTTCTTAGGAGAAACTTTTCCACAACTTCTTTTGAATCAGGA 697017 Query 10203 AGAttttttttACCTG 10218 || | ||| || |||| Sbjct 697016 AGCTCTTTCTTCCCTG 697001 Score = 95.1 bits (104), Expect = 2e-14 Identities = 181/264 (69%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | ||||||| |||| | |||| ||||| || | |||||||| || || | Sbjct 699213 CTTACCCTGCCAGCTCTTTGCCTGCTGAAAGATTCAACAAACTGGGTAAGTCCATGTTCC 699154 Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATGTAGTCATACTTTGTTTTATCAATCTCA 9441 | | |||||||||||||| | ||| | ||||| || | |||||||| | | Sbjct 699153 AGTAAGATGGAATTGTTGTAGAGGAACTGTTGGTAGTTGTATTCCTGGTTATCAATTTGA 699094 Query 9442 AACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGA 9501 | | || ||||| || | |||||||||||| | |||| ||||| ||| || || Sbjct 699093 AGGGTGTCAGGCATAAGGGGATGCCAGTGATAAAGGGTGTTGAACTCAGAAGCAATGCGG 699034 Query 9502 TTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGTG 9560 |||||||||||||| | | ||| ||||| || || | |||| | || |||| Sbjct 699033 TTTTGGTACTGGAATTGCTGGTTGAAA-AGCAGCTCTGGATCAAACTTGAGCTTGAAGTT 698975 Query 9561 GTAGCCGCTGAGCTGCTGAACATA 9584 ||||| || | ||||| ||||| Sbjct 698974 ATAGCCACTCAAATGCTGTACATA 698951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708473405382320