Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq740 170 3e-38 seq538 158 2e-34 seq161 111 2e-20 >seq740 Length=1116153 Score = 170 bits (188), Expect = 3e-38 Identities = 196/261 (75%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||| || |||| | || || || |||||||||||||| ||||||||||| || || Sbjct 314089 GCTAAGCGCCACCGCAAGGTC-CTCCGCGATAACATCCAAGGCATCACCAAGCCCGCCAT 314147 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || |||||||||||||| || || || ||||| ||||||| | |||| || |||| Sbjct 314148 TCGGCGTCTGGCTCGTCGCGGCGGCGTGAAGCGCATCTCTGGTCTCATCTACGAGGAGAC 314207 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || |||| | || || ||| || |||| || ||| || ||| ||||| Sbjct 314208 TCGCGGGGTGCTGAAAGTGTTTCTGGAGAATGTGATCCGGGACGCTGTCACCTACACCGA 314267 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||||| ||||| |||||| |||||||| | |||||||| | || || ||||| Sbjct 314268 ACACGCTAAACGCAAGACCGTCACCGCCATGGATGTGGTCTATGCGCTCAAGCGCCAAGG 314327 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | || || ||||| Sbjct 314328 ACGCACACTGTACGGATTTGG 314348 Score = 167 bits (184), Expect = 4e-37 Identities = 193/260 (74%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||||| | ||||| || ||||||||||| ||||||||||| || || Sbjct 196370 GCGAAACGCCATCGCAAAGTGCTTCGTGACAACATCCAAGGCATCACCAAGCCCGCCATT 196429 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| || ||||||||||| || || ||||| |||| || | | || || |||| | Sbjct 196430 CGTCGCCTAGCTCGTCGTGGCGGCGTGAAGCGCATCTCCGGCCTCATTTACGAGGAGACT 196489 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | || || ||| ||| |||| || ||| || ||| |||||| Sbjct 196490 CGCGGGGTGCTGAAGGTGTTTCTGGAGAACGTGATCCGGGACGCTGTCACCTACACCGAG 196549 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || |||||||| |||||| |||||||| | |||||||| | || || ||||| Sbjct 196550 CACGCCAAGCGTAAGACCGTCACCGCCATGGATGTGGTCTATGCCCTCAAGCGCCAAGGG 196609 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | || || ||||| Sbjct 196610 CGCACTCTCTACGGGTTTGG 196629 Score = 167 bits (184), Expect = 4e-37 Identities = 197/267 (74%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || || |||| | ||| |||||||||||||||||||| || || ||||||||| Sbjct 291093 GCAAAACGCCACCGCAAAGTTCTACGAGATAACATCCAAGGAATTACTAAACCAGCTATC 291152 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||||||||| || || || || || | ||||| | | || || |||| Sbjct 291153 CGCCGCCTGGCTCGTCGCGGCGGCGTGAAACGCATTTCTGGCCTCATATACGAGGAGACC 291212 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | || || | | ||| |||| || ||| || |||||| ||| Sbjct 291213 CGAGGGGTGCTGAAGGTTTTTCTAGAAAACGTGATCCGGGACGCTGTCACCTATACGGAG 291272 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| || ||||| || |||||||| | ||||| || |||||||| ||||| Sbjct 291273 CACGCCAAACGGAAAACTGTAACGGCCATGGATGTAGTCTACGCTTTGAAACGCCAAGGA 291332 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | |||| || |||||| | ||| Sbjct 291333 CGCACACTTTACGGCTTTGGAGGCTAA 291359 Score = 163 bits (180), Expect = 4e-36 Identities = 197/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || || ||||||||||| ||||||||||| ||||| Sbjct 891318 CGCAAAGCGGCACCGCAAAGTACTGCGCGACAACATCCAAGGCATCACCAAGCCCGCTAT 891259 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || |||||||||| ||||| || ||||| |||| || | |||| || |||| Sbjct 891258 TCGCCGCTTGGCTCGTCGCGGTGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 891199 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | || || ||| ||| |||| || || || ||| ||||| Sbjct 891198 CCGCGGGGTGCTGAAGGTGTTTCTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGA 891139 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| |||||||| | |||||||| | ||||| || || Sbjct 891138 GCACGCCAAGCGCAAGACCGTCACCGCCATGGATGTGGTCTATGCCCTCAAACGCCAGGG 891079 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | ||||||| || || ||||| Sbjct 891078 ACGCACTCTTTATGGCTTCGGCGGTTAA 891051 Score = 150 bits (166), Expect = 3e-32 Identities = 194/268 (72%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | | || || || |||||||| || ||||||||||| || || Sbjct 131566 CGCTAAGCGTCACCGAAAAGTCCTCCGTGACAACATCCAGGGCATCACCAAGCCCGCCAT 131507 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | |||||||||||||| || || || ||||| |||| || | |||| || |||| Sbjct 131506 CAGGCGTCTGGCTCGTCGCGGCGGCGTGAAGCGCATCTCCGGCCTTATCTACGAGGAGAC 131447 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | || || ||| ||| |||| || || || ||| ||||| Sbjct 131446 CCGCGGGGTCCTAAAGGTGTTTCTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGA 131387 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || || || || |||||| |||||||| |||||||||| | || || || || Sbjct 131386 ACACGCCAAGCGCAAAACCGTCACCGCCATGGATGTCGTCTATGCCCTCAAGCGCCAGGG 131327 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || |||||||| ||||| Sbjct 131326 ACGCACCCTCTACGGTTTTGGCGGTTAA 131299 Score = 149 bits (164), Expect = 1e-31 Identities = 191/261 (73%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| | || || || || || ||||| || ||||||||||| ||||| Sbjct 869484 GCCAAGCGCCATCGCAAGGTC-CTCCGCGACAATATCCAGGGTATCACCAAGCCCGCTAT 869542 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| ||||||||||| || || || ||||| |||| || | |||| || |||| Sbjct 869543 TCGTCGCCTGGCTCGTCGCGGCGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 869602 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | || || ||| ||| |||| || || || ||| ||||| Sbjct 869603 CCGCGGGGTGCTGAAGGTGTTTCTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGA 869662 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| |||||||| | |||||||| | || || || || Sbjct 869663 GCACGCCAAGCGCAAGACCGTCACCGCCATGGATGTGGTCTATGCCCTCAAGCGCCAGGG 869722 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | || || ||||| Sbjct 869723 ACGCACACTGTACGGATTTGG 869743 Score = 145 bits (160), Expect = 1e-30 Identities = 191/262 (73%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| ||||| | | || || || ||||| ||||| || ||||||||||| || | Sbjct 339522 CGCTAAGCGCCATCGTAAGGTC-CTACGCGATAATATCCAGGGCATCACCAAGCCCGCCA 339464 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || || ||||||||||| || || || ||||| |||| || | |||| || |||| Sbjct 339463 TTCGGCGCCTGGCTCGTCGCGGCGGCGTGAAGCGCATCTCCGGCCTTATCTACGAGGAGA 339404 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || ||||| | || || ||| ||| |||| || || || ||| |||| Sbjct 339403 CCCGCGGGGTGCTGAAGGTGTTTCTGGAGAACGTGATCCGGGACGCCGTCACCTACACCG 339344 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||| |||||||| | |||||||| | || || || | Sbjct 339343 AGCACGCCAAGCGCAAGACCGTCACCGCCATGGATGTGGTCTATGCCCTCAAGCGCCAGG 339284 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 | || | | || ||||| || Sbjct 339283 GACGCACACTGTACGGTTTCGG 339262 Score = 141 bits (156), Expect = 1e-29 Identities = 192/268 (72%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| ||||| | | |||||| ||||| ||||| || || || || || || || Sbjct 641082 GCTAAGCGCCATCGAAAAGTTCTTCGTGATAATATCCAGGGCATAACGAAACCTGCAATT 641141 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || ||||| || || || ||||| |||| || | |||| || |||| Sbjct 641142 CGCCGTCTTGCCCGTCGCGGCGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGACC 641201 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | || || ||| ||| |||| || || || ||| |||||| Sbjct 641202 CGCGGGGTGCTGAAGGTGTTTCTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGAG 641261 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| |||||||| | |||||||| | || || || || Sbjct 641262 CACGCCAAGCGCAAGACCGTCACCGCCATGGATGTGGTCTATGCCCTCAAGCGACAGGGA 641321 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| | || || ||||| | |||| Sbjct 641322 CGTACACTGTACGGATTTGGCGGCTAAT 641349 >seq538 Length=1665627 Score = 158 bits (174), Expect = 2e-34 Identities = 180/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| || |||| | || |||||||||||||| || |||||||||||||||||| Sbjct 1634715 GCTAAGCGCCACCGCAAAGTCCTGCGAGATAACATCCAGGGGATCACCAAGCCAGCTATC 1634774 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||| || ||||| || |||||||| ||||||| || |||| || |||| Sbjct 1634775 CGGCGCCTGGCGCGGCGTGGGGGTGTCAAGCGGATCTCTGGGCTGATCTACGAGGAGACC 1634834 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | ||||| ||| ||| |||| || || || ||| || ||| Sbjct 1634835 CGTGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGGGACGCGGTCACCTACACTGAG 1634894 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || || ||||| || || ||||||| | || || || | || || || ||| Sbjct 1634895 CATGCCAAGCGCAAGACCGTGACAGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGGC 1634954 Query 16673 CG 16674 || Sbjct 1634955 CG 1634956 >seq161 Length=4127105 Score = 111 bits (122), Expect = 2e-20 Identities = 153/212 (72%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||| ||| ||||| || ||||||||||| || || |||||||||||||||||| Sbjct 2726639 GCTAAG--TCACTGCAGAGTCCTGCGAGATAACATTCAGGGCATCACCAAGCCAGCTATC 2726696 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||| || | || || ||||||| ||||||| || ||| || |||| Sbjct 2726697 CGGCGCCTGAGAGGT-GAGGGGGTATCAAGCGGATCTCTGGGCTGATCTGCGAGGAGACC 2726755 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| |||||| | ||||| ||| ||| ||||| || | || ||| || ||| Sbjct 2726756 CGTGGTGTGTTGAAGGTGTTCCTGGAGAACGTGATCCAGGACGTGGTCACCTACACGGAG 2726815 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGA 16644 ||| | || ||||| || || ||||||| Sbjct 2726816 AGCGCCACGCGCAAGACCGTGACAGCCATGGA 2726847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069894276479