Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq740 170 3e-38
seq538 158 2e-34
seq161 111 2e-20
>seq740
Length=1116153
Score = 170 bits (188), Expect = 3e-38
Identities = 196/261 (75%), Gaps = 2/261 (1%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||||| || |||| | || || || |||||||||||||| ||||||||||| || ||
Sbjct 314089 GCTAAGCGCCACCGCAAGGTC-CTCCGCGATAACATCCAAGGCATCACCAAGCCCGCCAT 314147
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| |||||||||||||| || || || ||||| ||||||| | |||| || ||||
Sbjct 314148 TCGGCGTCTGGCTCGTCGCGGCGGCGTGAAGCGCATCTCTGGTCTCATCTACGAGGAGAC 314207
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||| | || |||| | || || ||| || |||| || ||| || ||| |||||
Sbjct 314208 TCGCGGGGTGCTGAAAGTGTTTCTGGAGAATGTGATCCGGGACGCTGTCACCTACACCGA 314267
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||||||||||| ||||| |||||| |||||||| | |||||||| | || || |||||
Sbjct 314268 ACACGCTAAACGCAAGACCGTCACCGCCATGGATGTGGTCTATGCGCTCAAGCGCCAAGG 314327
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
|| | | || || |||||
Sbjct 314328 ACGCACACTGTACGGATTTGG 314348
Score = 167 bits (184), Expect = 4e-37
Identities = 193/260 (74%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| || || ||||||| | ||||| || ||||||||||| ||||||||||| || ||
Sbjct 196370 GCGAAACGCCATCGCAAAGTGCTTCGTGACAACATCCAAGGCATCACCAAGCCCGCCATT 196429
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
||||| || ||||||||||| || || ||||| |||| || | | || || |||| |
Sbjct 196430 CGTCGCCTAGCTCGTCGTGGCGGCGTGAAGCGCATCTCCGGCCTCATTTACGAGGAGACT 196489
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | || ||||| | || || ||| ||| |||| || ||| || ||| ||||||
Sbjct 196490 CGCGGGGTGCTGAAGGTGTTTCTGGAGAACGTGATCCGGGACGCTGTCACCTACACCGAG 196549
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || |||||||| |||||| |||||||| | |||||||| | || || |||||
Sbjct 196550 CACGCCAAGCGTAAGACCGTCACCGCCATGGATGTGGTCTATGCCCTCAAGCGCCAAGGG 196609
Query 16673 CGTAAGATTTATGGTTTTGG 16692
|| | | || || |||||
Sbjct 196610 CGCACTCTCTACGGGTTTGG 196629
Score = 167 bits (184), Expect = 4e-37
Identities = 197/267 (74%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| || || || |||| | ||| |||||||||||||||||||| || || |||||||||
Sbjct 291093 GCAAAACGCCACCGCAAAGTTCTACGAGATAACATCCAAGGAATTACTAAACCAGCTATC 291152
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| || ||||||||||| || || || || || | ||||| | | || || ||||
Sbjct 291153 CGCCGCCTGGCTCGTCGCGGCGGCGTGAAACGCATTTCTGGCCTCATATACGAGGAGACC 291212
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | || ||||| | || || | | ||| |||| || ||| || |||||| |||
Sbjct 291213 CGAGGGGTGCTGAAGGTTTTTCTAGAAAACGTGATCCGGGACGCTGTCACCTATACGGAG 291272
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| ||||| || ||||| || |||||||| | ||||| || |||||||| |||||
Sbjct 291273 CACGCCAAACGGAAAACTGTAACGGCCATGGATGTAGTCTACGCTTTGAAACGCCAAGGA 291332
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699
|| | |||| || |||||| | |||
Sbjct 291333 CGCACACTTTACGGCTTTGGAGGCTAA 291359
Score = 163 bits (180), Expect = 4e-36
Identities = 197/268 (74%), Gaps = 0/268 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| | || || || ||||||||||| ||||||||||| |||||
Sbjct 891318 CGCAAAGCGGCACCGCAAAGTACTGCGCGACAACATCCAAGGCATCACCAAGCCCGCTAT 891259
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| || |||||||||| ||||| || ||||| |||| || | |||| || ||||
Sbjct 891258 TCGCCGCTTGGCTCGTCGCGGTGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 891199
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || ||||| | || || ||| ||| |||| || || || ||| |||||
Sbjct 891198 CCGCGGGGTGCTGAAGGTGTTTCTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGA 891139
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| |||||| |||||||| | |||||||| | ||||| || ||
Sbjct 891138 GCACGCCAAGCGCAAGACCGTCACCGCCATGGATGTGGTCTATGCCCTCAAACGCCAGGG 891079
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|| | ||||||| || || |||||
Sbjct 891078 ACGCACTCTTTATGGCTTCGGCGGTTAA 891051
Score = 150 bits (166), Expect = 3e-32
Identities = 194/268 (72%), Gaps = 0/268 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||||||||| || | | || || || |||||||| || ||||||||||| || ||
Sbjct 131566 CGCTAAGCGTCACCGAAAAGTCCTCCGTGACAACATCCAGGGCATCACCAAGCCCGCCAT 131507
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
| | |||||||||||||| || || || ||||| |||| || | |||| || ||||
Sbjct 131506 CAGGCGTCTGGCTCGTCGCGGCGGCGTGAAGCGCATCTCCGGCCTTATCTACGAGGAGAC 131447
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | || || ||| ||| |||| || || || ||| |||||
Sbjct 131446 CCGCGGGGTCCTAAAGGTGTTTCTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGA 131387
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||||| || || || || |||||| |||||||| |||||||||| | || || || ||
Sbjct 131386 ACACGCCAAGCGCAAAACCGTCACCGCCATGGATGTCGTCTATGCCCTCAAGCGCCAGGG 131327
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699
|| | | || |||||||| |||||
Sbjct 131326 ACGCACCCTCTACGGTTTTGGCGGTTAA 131299
Score = 149 bits (164), Expect = 1e-31
Identities = 191/261 (73%), Gaps = 2/261 (1%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| ||||| ||||||| | || || || || || ||||| || ||||||||||| |||||
Sbjct 869484 GCCAAGCGCCATCGCAAGGTC-CTCCGCGACAATATCCAGGGTATCACCAAGCCCGCTAT 869542
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||||| ||||||||||| || || || ||||| |||| || | |||| || ||||
Sbjct 869543 TCGTCGCCTGGCTCGTCGCGGCGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 869602
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || ||||| | || || ||| ||| |||| || || || ||| |||||
Sbjct 869603 CCGCGGGGTGCTGAAGGTGTTTCTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGA 869662
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| |||||| |||||||| | |||||||| | || || || ||
Sbjct 869663 GCACGCCAAGCGCAAGACCGTCACCGCCATGGATGTGGTCTATGCCCTCAAGCGCCAGGG 869722
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
|| | | || || |||||
Sbjct 869723 ACGCACACTGTACGGATTTGG 869743
Score = 145 bits (160), Expect = 1e-30
Identities = 191/262 (73%), Gaps = 2/262 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||||||||| ||||| | | || || || ||||| ||||| || ||||||||||| || |
Sbjct 339522 CGCTAAGCGCCATCGTAAGGTC-CTACGCGATAATATCCAGGGCATCACCAAGCCCGCCA 339464
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
| || || ||||||||||| || || || ||||| |||| || | |||| || ||||
Sbjct 339463 TTCGGCGCCTGGCTCGTCGCGGCGGCGTGAAGCGCATCTCCGGCCTTATCTACGAGGAGA 339404
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|| | || ||||| | || || ||| ||| |||| || || || ||| ||||
Sbjct 339403 CCCGCGGGGTGCTGAAGGTGTTTCTGGAGAACGTGATCCGGGACGCCGTCACCTACACCG 339344
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| || || ||||| |||||| |||||||| | |||||||| | || || || |
Sbjct 339343 AGCACGCCAAGCGCAAGACCGTCACCGCCATGGATGTGGTCTATGCCCTCAAGCGCCAGG 339284
Query 16671 GCCGTAAGATTTATGGTTTTGG 16692
| || | | || ||||| ||
Sbjct 339283 GACGCACACTGTACGGTTTCGG 339262
Score = 141 bits (156), Expect = 1e-29
Identities = 192/268 (72%), Gaps = 0/268 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|||||||| ||||| | | |||||| ||||| ||||| || || || || || || ||
Sbjct 641082 GCTAAGCGCCATCGAAAAGTTCTTCGTGATAATATCCAGGGCATAACGAAACCTGCAATT 641141
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| ||||| || ||||| || || || ||||| |||| || | |||| || ||||
Sbjct 641142 CGCCGTCTTGCCCGTCGCGGCGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGACC 641201
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | || ||||| | || || ||| ||| |||| || || || ||| ||||||
Sbjct 641202 CGCGGGGTGCTGAAGGTGTTTCTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGAG 641261
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || || ||||| |||||| |||||||| | |||||||| | || || || ||
Sbjct 641262 CACGCCAAGCGCAAGACCGTCACCGCCATGGATGTGGTCTATGCCCTCAAGCGACAGGGA 641321
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700
|||| | || || ||||| | ||||
Sbjct 641322 CGTACACTGTACGGATTTGGCGGCTAAT 641349
>seq538
Length=1665627
Score = 158 bits (174), Expect = 2e-34
Identities = 180/242 (74%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|||||||| || |||| | || |||||||||||||| || ||||||||||||||||||
Sbjct 1634715 GCTAAGCGCCACCGCAAAGTCCTGCGAGATAACATCCAGGGGATCACCAAGCCAGCTATC 1634774
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| || ||||| || ||||| || |||||||| ||||||| || |||| || ||||
Sbjct 1634775 CGGCGCCTGGCGCGGCGTGGGGGTGTCAAGCGGATCTCTGGGCTGATCTACGAGGAGACC 1634834
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| || ||||| | ||||| ||| ||| |||| || || || ||| || |||
Sbjct 1634835 CGTGGCGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGGGACGCGGTCACCTACACTGAG 1634894
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| || || || ||||| || || ||||||| | || || || | || || || |||
Sbjct 1634895 CATGCCAAGCGCAAGACCGTGACAGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGGGC 1634954
Query 16673 CG 16674
||
Sbjct 1634955 CG 1634956
>seq161
Length=4127105
Score = 111 bits (122), Expect = 2e-20
Identities = 153/212 (72%), Gaps = 3/212 (1%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|||||| ||| ||||| || ||||||||||| || || ||||||||||||||||||
Sbjct 2726639 GCTAAG--TCACTGCAGAGTCCTGCGAGATAACATTCAGGGCATCACCAAGCCAGCTATC 2726696
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| || ||| || | || || ||||||| ||||||| || ||| || ||||
Sbjct 2726697 CGGCGCCTGAGAGGT-GAGGGGGTATCAAGCGGATCTCTGGGCTGATCTGCGAGGAGACC 2726755
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| ||| |||||| | ||||| ||| ||| ||||| || | || ||| || |||
Sbjct 2726756 CGTGGTGTGTTGAAGGTGTTCCTGGAGAACGTGATCCAGGACGTGGTCACCTACACGGAG 2726815
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGA 16644
||| | || ||||| || || |||||||
Sbjct 2726816 AGCGCCACGCGCAAGACCGTGACAGCCATGGA 2726847
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79069894276479
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