Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq30 235 6e-57 seq602 230 2e-55 seq418 221 1e-52 seq92 89.7 5e-13 seq43 82.4 8e-11 >seq30 Length=8517879 Score = 235 bits (260), Expect = 6e-57 Identities = 538/810 (66%), Gaps = 8/810 (1%) Strand=Plus/Minus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || |||||||| || | ||| || || | ||||||| | ||| Sbjct 2592017 TTCATTTAGAAGTCAGCATCCAAGGTAAAAGAGTTGTCCGTTGAACTTGACATCACACCC 2591958 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || | | ||| || | || || || || || ||||||||||| || Sbjct 2591957 ATCCTCTGATACTCGCCTAGTCTCTTCTTAAAGAAGTTAGTTTTGCCTTCCAATGAAATG 2591898 Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301 |||||||| ||||||||||| || | | || | || | | ||||| || | Sbjct 2591897 TTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTGAAGCCCAGCTCCAGT 2591838 Query 21302 AATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATC 21361 | | ||| || || || ||||| || || || |||||| || ||||| ||||| Sbjct 2591837 ATGAGTCTGTCGGCCACGAATTCAATGTACTGCTTCATTAAAGTGCAGTTCATCCCGATG 2591778 Query 21362 AATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATT 21421 | || || || | || ||||| | || | |||||| ||| || | |||||| Sbjct 2591777 AGATTCACTGGCAAGGCCTTTGTGAGGAACTCCTGTTCTATCCTGACAGCATTGACAATT 2591718 Query 21422 ATATTTATTATCCTAGATGTACT--AGGGGGATACAATAATTGTTTAAACATCAAACATG 21479 |||||| | || || | ||| || | | ||||| ||||| ||||| | Sbjct 2591717 ATATTTCTCTGACTCTCTGCTCCGAAGGTTTATGTAGCAGATGTTTGAACATTAAACACG 2591658 Query 21480 CAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGG 21539 ||||||||||||| | || ||||| || || |||| ||||| |||||||| | ||||| Sbjct 2591657 CAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTCATTCGAAAATGTAAGACCGG 2591598 Query 21540 GCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGC 21599 |||| | ||||| || || | ||| ||||| || ||||| | || |||||||| || | Sbjct 2591597 GCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTC 2591538 Query 21600 CCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCC 21659 | ||||| || ||||| || |||| | ||| || | || | |||||| ||| |||| Sbjct 2591537 CTTCAACTGCTGCAAAGGCTACTACACATTCTCCATGGGTGGCTTCTTTGTCCCCAATCC 2591478 Query 21660 ATTTTTCTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTATCAATAGCTTTTAAA 21718 | ||||| | |||||| |||||| | |||| ||||| |||||||| || | Sbjct 2591477 AACACAAGGCCCAATCTGCCTTCTTCTTT-ACACAAGGCATTGTCTCAATAGCGTT--GA 2591421 Query 21719 AGATGAttt--ttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTT 21776 ||| || || | || | ||| | | | ||| ||||||| Sbjct 2591420 AGAGGAATTCCCTCTCTTTGGAATCTTTAACGTAAGTATCGATGAGGAGACTGTACATTT 2591361 Query 21777 CAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATT 21836 |||| ||||| ||||| || || ||||| || || || ||||| | || |||| | | Sbjct 2591360 CAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCAGGCTTCTGTAATCT 2591301 Query 21837 GAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAA 21896 |||| || ||| || | ||||||||||| | ||||| ||||||||||| || | Sbjct 2591300 GAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCACTCACTATGCCATCACTGGCTGCGA 2591241 Query 21897 AAAATGCCAATATATTTTTTATAAAATATC 21926 | || |||| | || ||||||||||| Sbjct 2591240 AGAAAGCCAGGACATGGGATATAAAATATC 2591211 >seq602 Length=1640730 Score = 230 bits (254), Expect = 2e-55 Identities = 591/897 (66%), Gaps = 14/897 (2%) Strand=Plus/Plus Query 21168 ttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTC 21227 ||||||| | ||||| | | ||| || | ||||| || || || || || || | Sbjct 122148 TTGACATCACGCCCATCCTCTAATACTCGCCTACTCTCTTA---AAGAAGTTAGTTTTGC 122204 Query 21228 CTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTAC 21287 |||||||||| || |||||||| ||||||||||| || | | || | ||| | Sbjct 122205 CTTCCAATGAAATGTTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACTTTGCTGA 122264 Query 21288 AACCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCAC 21347 | ||||| || || | ||| || || || ||||| | || || |||||| | Sbjct 122265 AGCCCAGCTCCAGTATAAGTCTGTCCGCCACGAATTCAGTGTACTGCTTCATTAAAGTGC 122324 Query 21348 AATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGA 21407 ||||||| ||||| | |||| || | || | ||| | || | |||||| || Sbjct 122325 AATTCATCCCGATGAGATTTATTGGCAAGGCCTCTGTAAGGAACTCCTGTTCTATCCTGA 122384 Query 21408 CGGCTTCAACAATTATATTTATTATCCTAGATGTACT--AGGGGGATACAATAATTGTTT 21465 | || | || ||||| | | | | || || | ||| || | | ||||| Sbjct 122385 CAGCATTGACGATTATTTCTCTGACTCTC--TGCTCCGAAGGTTTATGTAGCAGATGTTT 122442 Query 21466 AAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGA 21525 ||||| || || |||||||||||||| | || ||||| || || |||| | |||| || Sbjct 122443 GAACATTAA-CACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGTGCATTCGA 122501 Query 21526 AAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCC 21585 |||||| | ||| ||||| ||||||| || || | ||| ||||| || ||||| | | Sbjct 122502 AAATGTAAGACCAGGCATCAATCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACT 122561 Query 21586 TGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTC 21645 |||||||| || || || || || ||||| || |||| | ||| || || || | ||| Sbjct 122562 AGAAAAGAAGATTCCTTCCACTGCTGCAAAGGCTACTACACATTCTCCATAGGTGGCTTC 122621 Query 21646 TTTATCCAATATCCATTTTTCTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTAT 21704 ||| ||| ||||| | ||||| | |||||| |||||| | |||| ||||| | Sbjct 122622 TTTGTCCCCAATCCAATGCAAGGCCCAATCTGCCTTCTTCTTT-ACACAAGGCATTGTCT 122680 Query 21705 CAATAGCTTTTAAAAGATGAttt--ttttCATCTACATCGGTTATGNNNNNNNNNNNNNN 21762 ||||||| || |||| || || | || | || | ||| Sbjct 122681 CAATAGCGTT--GAAGAGGAATTCCCTCTCTTTGGAATGTTTAATGTAAGTATCGATGAG 122738 Query 21763 NNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCT 21822 ||| ||||||||||| ||||| ||||| || || ||||| || || || ||||| | Sbjct 122739 GAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCA 122798 Query 21823 TGCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCC 21882 || |||| | ||||| || ||| || | ||||||||||||| |||||||| Sbjct 122799 GGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTTCACCAAGTTTTCATTCACTATTCC 122858 Query 21883 ATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAA 21942 ||||||||| || ||||| || | | || ||||||||||| || | | | | | Sbjct 122859 ATCACTGGCCGCGAAAAAAGCAAGCACATGGGATATAAAATATCTCTCCTCAGGTTTCAG 122918 Query 21943 TTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGC 22002 | ||| | | || || || | || || || |||| ||||||||| || Sbjct 122919 GGCCTCCCAGTGCTGGATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAATGAGGC 122978 Query 22003 AATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAA 22059 ||||| |||||||| ||||||||||| ||| | || ||||| || ||||| Sbjct 122979 CTCGGCCTTCTTATACATCTGCCAGATATCATGGTATTTGATGGGAAAGATGACAAA 123035 >seq418 Length=2079112 Score = 221 bits (244), Expect = 1e-52 Identities = 586/894 (66%), Gaps = 9/894 (1%) Strand=Plus/Plus Query 21168 ttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTC 21227 ||||||| || ||||| | ||||| || | ||||| || || || || || || || | Sbjct 761067 TTGACATCATGCCCATCCTCTGATACTCCCCTACTCTCTTCTCAAAGAAGTTAGTTTTGC 761126 Query 21228 CTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTAC 21287 |||||||||| || |||||||| ||||||||||| || | | || | || | Sbjct 761127 CTTCCAATGAAATGTTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTGA 761186 Query 21288 AACCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCAC 21347 | ||||| || || | ||| || || |||||||| || || || |||||| | Sbjct 761187 AGCCCAGCTCCAGTATAAGTCTGTCCGCCACAAATTCAATGTACTGCTTCATTAAAGTGC 761246 Query 21348 AATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGA 21407 | ||||| ||||| | || || || | || | ||| | || | |||||| || Sbjct 761247 AGTTCATCCCGATGAGATTCACTGGCAAGGCCTCTGTGAGGAACTCCTGTTCTATCCTGA 761306 Query 21408 CGGCTTCAACAATTATATTTATTATCCTA-GATGTACTAGGGGGATACAATAATTGTTTA 21466 | || | |||||||| | | | | || | | | ||| || | | ||||| Sbjct 761307 CTGCATTGACAATTATTTCTCTGACTCTCTGCTCCAA-AGGTTTATGTACCAGATGTTTG 761365 Query 21467 AACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAA 21526 ||||| ||||| |||||||||||||| | || ||||| || || |||| | ||| ||| Sbjct 761366 AACATTAAACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTTATTCGAA 761425 Query 21527 AATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCT 21586 ||||| | ||| ||||| ||||||| || || | ||| ||||| || ||||| | || Sbjct 761426 AATGTAAGACCAGGCATCAATCCTCGTTTCTTAAGCCAGAATATGGATGCAAAAGAACCA 761485 Query 21587 GAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCT 21646 ||| |||| || || || || || ||| || ||| |||| || || || | |||| Sbjct 761486 GAATAGAAGATTCCTTCCACTGCTCTAAAGGCTCCTACATGTTCTCCATAGGTGGCTTCT 761545 Query 21647 TTATCCAATATCCATTTTTCTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTATC 21705 || ||| ||||| ||||| | |||||| |||||| | |||| ||||| || Sbjct 761546 TTGTCCCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTT-ACACAAGGCATTGTCTC 761604 Query 21706 AATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNN 21765 |||||| || |||| || || | ||| | | | | Sbjct 761605 AATAGCGTT--GAAGAGGA---ATTCCCTCTCTTTGGAATCTTTAAGTATCGATGAGGAG 761659 Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825 ||| ||||||||||| ||||| ||||| || || ||||| || || || ||||| || || Sbjct 761660 ACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCTGGC 761719 Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885 |||| | ||||| || ||| || | | ||||||||||| ||||| ||||| Sbjct 761720 TTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACAAAGTTTTCATTCACTATGCCATC 761779 Query 21886 ACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTT 21945 |||||| || || || |||| | || ||||||||||| || | | | | | Sbjct 761780 ACTGGCCGCGAAGAAAGCCAGCACATGGGATATAAAATATCTCTCCTCAGGTTTCAGGGC 761839 Query 21946 TTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAAT 22005 | ||| | | || || || | || || || |||| |||||||| ||| Sbjct 761840 CTCCCAGTGCTGGATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAGTGAAGCCTC 761899 Query 22006 AGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAA 22059 || || |||||||| ||| ||||||| ||| || ||||| || ||||| Sbjct 761900 GGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATGGGAAAGATGACAAA 761953 >seq92 Length=5367877 Score = 89.7 bits (98), Expect = 5e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 21498 CTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTT 21557 ||||||| || || || | ||||| ||||| || | || ||||| | ||||| |||| Sbjct 3850916 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTTTTTT 3850857 Query 21558 TTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATG 21617 ||| ||||||||| | || || | ||||||||||||||| || || || ||||| || | Sbjct 3850856 TTAGCCAAAATATAGCAGCGAAAGATCCTGAAAAGAAAATTCCTTCTACAGCAGCGAAGG 3850797 Query 21618 CAAC 21621 | || Sbjct 3850796 CTAC 3850793 >seq43 Length=7124368 Score = 82.4 bits (90), Expect = 8e-11 Identities = 100/133 (75%), Gaps = 5/133 (4%) Strand=Plus/Minus Query 130658 TTCTTCC---GTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCC 130714 ||||||| ||||||| | ||||||| | ||| | ||||| ||| || || ||| | Sbjct 2869366 TTCTTCCAGGGTTTCAATCTGAACAAGATTAGCTTCATATGAATCACAGAA-GTCTTGGC 2869308 Query 130715 A-AATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCC 130773 |||||||||| ||| ||||||||||||||||| ||||| ||||| |||||||| Sbjct 2869307 TTAATGTCCAATCCCTTGTGTCTTCAGAAAAGTAAAAACATTTGGTTCCAAGTCCAATCC 2869248 Query 130774 ATCCCTTTGGGCA 130786 || | |||||| Sbjct 2869247 ATGTATCTGGGCA 2869235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531862217245720