Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq30 235 6e-57
seq602 230 2e-55
seq418 221 1e-52
seq92 89.7 5e-13
seq43 82.4 8e-11
>seq30
Length=8517879
Score = 235 bits (260), Expect = 6e-57
Identities = 538/810 (66%), Gaps = 8/810 (1%)
Strand=Plus/Minus
Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181
|| ||||| || |||||||| || | ||| || || | ||||||| | |||
Sbjct 2592017 TTCATTTAGAAGTCAGCATCCAAGGTAAAAGAGTTGTCCGTTGAACTTGACATCACACCC 2591958
Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241
|| | ||||| || | | ||| || | || || || || || ||||||||||| ||
Sbjct 2591957 ATCCTCTGATACTCGCCTAGTCTCTTCTTAAAGAAGTTAGTTTTGCCTTCCAATGAAATG 2591898
Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301
|||||||| ||||||||||| || | | || | || | | ||||| || |
Sbjct 2591897 TTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTGAAGCCCAGCTCCAGT 2591838
Query 21302 AATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATC 21361
| | ||| || || || ||||| || || || |||||| || ||||| |||||
Sbjct 2591837 ATGAGTCTGTCGGCCACGAATTCAATGTACTGCTTCATTAAAGTGCAGTTCATCCCGATG 2591778
Query 21362 AATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATT 21421
| || || || | || ||||| | || | |||||| ||| || | ||||||
Sbjct 2591777 AGATTCACTGGCAAGGCCTTTGTGAGGAACTCCTGTTCTATCCTGACAGCATTGACAATT 2591718
Query 21422 ATATTTATTATCCTAGATGTACT--AGGGGGATACAATAATTGTTTAAACATCAAACATG 21479
|||||| | || || | ||| || | | ||||| ||||| ||||| |
Sbjct 2591717 ATATTTCTCTGACTCTCTGCTCCGAAGGTTTATGTAGCAGATGTTTGAACATTAAACACG 2591658
Query 21480 CAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGG 21539
||||||||||||| | || ||||| || || |||| ||||| |||||||| | |||||
Sbjct 2591657 CAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTCATTCGAAAATGTAAGACCGG 2591598
Query 21540 GCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGC 21599
|||| | ||||| || || | ||| ||||| || ||||| | || |||||||| || |
Sbjct 2591597 GCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTC 2591538
Query 21600 CCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCC 21659
| ||||| || ||||| || |||| | ||| || | || | |||||| ||| ||||
Sbjct 2591537 CTTCAACTGCTGCAAAGGCTACTACACATTCTCCATGGGTGGCTTCTTTGTCCCCAATCC 2591478
Query 21660 ATTTTTCTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTATCAATAGCTTTTAAA 21718
| ||||| | |||||| |||||| | |||| ||||| |||||||| || |
Sbjct 2591477 AACACAAGGCCCAATCTGCCTTCTTCTTT-ACACAAGGCATTGTCTCAATAGCGTT--GA 2591421
Query 21719 AGATGAttt--ttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTT 21776
||| || || | || | ||| | | | ||| |||||||
Sbjct 2591420 AGAGGAATTCCCTCTCTTTGGAATCTTTAACGTAAGTATCGATGAGGAGACTGTACATTT 2591361
Query 21777 CAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATT 21836
|||| ||||| ||||| || || ||||| || || || ||||| | || |||| | |
Sbjct 2591360 CAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCAGGCTTCTGTAATCT 2591301
Query 21837 GAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAA 21896
|||| || ||| || | ||||||||||| | ||||| ||||||||||| || |
Sbjct 2591300 GAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCACTCACTATGCCATCACTGGCTGCGA 2591241
Query 21897 AAAATGCCAATATATTTTTTATAAAATATC 21926
| || |||| | || |||||||||||
Sbjct 2591240 AGAAAGCCAGGACATGGGATATAAAATATC 2591211
>seq602
Length=1640730
Score = 230 bits (254), Expect = 2e-55
Identities = 591/897 (66%), Gaps = 14/897 (2%)
Strand=Plus/Plus
Query 21168 ttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTC 21227
||||||| | ||||| | | ||| || | ||||| || || || || || || |
Sbjct 122148 TTGACATCACGCCCATCCTCTAATACTCGCCTACTCTCTTA---AAGAAGTTAGTTTTGC 122204
Query 21228 CTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTAC 21287
|||||||||| || |||||||| ||||||||||| || | | || | ||| |
Sbjct 122205 CTTCCAATGAAATGTTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACTTTGCTGA 122264
Query 21288 AACCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCAC 21347
| ||||| || || | ||| || || || ||||| | || || |||||| |
Sbjct 122265 AGCCCAGCTCCAGTATAAGTCTGTCCGCCACGAATTCAGTGTACTGCTTCATTAAAGTGC 122324
Query 21348 AATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGA 21407
||||||| ||||| | |||| || | || | ||| | || | |||||| ||
Sbjct 122325 AATTCATCCCGATGAGATTTATTGGCAAGGCCTCTGTAAGGAACTCCTGTTCTATCCTGA 122384
Query 21408 CGGCTTCAACAATTATATTTATTATCCTAGATGTACT--AGGGGGATACAATAATTGTTT 21465
| || | || ||||| | | | | || || | ||| || | | |||||
Sbjct 122385 CAGCATTGACGATTATTTCTCTGACTCTC--TGCTCCGAAGGTTTATGTAGCAGATGTTT 122442
Query 21466 AAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGA 21525
||||| || || |||||||||||||| | || ||||| || || |||| | |||| ||
Sbjct 122443 GAACATTAA-CACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGTGCATTCGA 122501
Query 21526 AAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCC 21585
|||||| | ||| ||||| ||||||| || || | ||| ||||| || ||||| | |
Sbjct 122502 AAATGTAAGACCAGGCATCAATCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACT 122561
Query 21586 TGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTC 21645
|||||||| || || || || || ||||| || |||| | ||| || || || | |||
Sbjct 122562 AGAAAAGAAGATTCCTTCCACTGCTGCAAAGGCTACTACACATTCTCCATAGGTGGCTTC 122621
Query 21646 TTTATCCAATATCCATTTTTCTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTAT 21704
||| ||| ||||| | ||||| | |||||| |||||| | |||| ||||| |
Sbjct 122622 TTTGTCCCCAATCCAATGCAAGGCCCAATCTGCCTTCTTCTTT-ACACAAGGCATTGTCT 122680
Query 21705 CAATAGCTTTTAAAAGATGAttt--ttttCATCTACATCGGTTATGNNNNNNNNNNNNNN 21762
||||||| || |||| || || | || | || | |||
Sbjct 122681 CAATAGCGTT--GAAGAGGAATTCCCTCTCTTTGGAATGTTTAATGTAAGTATCGATGAG 122738
Query 21763 NNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCT 21822
||| ||||||||||| ||||| ||||| || || ||||| || || || ||||| |
Sbjct 122739 GAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCA 122798
Query 21823 TGCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCC 21882
|| |||| | ||||| || ||| || | ||||||||||||| ||||||||
Sbjct 122799 GGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTTCACCAAGTTTTCATTCACTATTCC 122858
Query 21883 ATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAA 21942
||||||||| || ||||| || | | || ||||||||||| || | | | | |
Sbjct 122859 ATCACTGGCCGCGAAAAAAGCAAGCACATGGGATATAAAATATCTCTCCTCAGGTTTCAG 122918
Query 21943 TTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGC 22002
| ||| | | || || || | || || || |||| ||||||||| ||
Sbjct 122919 GGCCTCCCAGTGCTGGATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAATGAGGC 122978
Query 22003 AATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAA 22059
||||| |||||||| ||||||||||| ||| | || ||||| || |||||
Sbjct 122979 CTCGGCCTTCTTATACATCTGCCAGATATCATGGTATTTGATGGGAAAGATGACAAA 123035
>seq418
Length=2079112
Score = 221 bits (244), Expect = 1e-52
Identities = 586/894 (66%), Gaps = 9/894 (1%)
Strand=Plus/Plus
Query 21168 ttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTC 21227
||||||| || ||||| | ||||| || | ||||| || || || || || || || |
Sbjct 761067 TTGACATCATGCCCATCCTCTGATACTCCCCTACTCTCTTCTCAAAGAAGTTAGTTTTGC 761126
Query 21228 CTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTAC 21287
|||||||||| || |||||||| ||||||||||| || | | || | || |
Sbjct 761127 CTTCCAATGAAATGTTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTGA 761186
Query 21288 AACCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCAC 21347
| ||||| || || | ||| || || |||||||| || || || |||||| |
Sbjct 761187 AGCCCAGCTCCAGTATAAGTCTGTCCGCCACAAATTCAATGTACTGCTTCATTAAAGTGC 761246
Query 21348 AATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGA 21407
| ||||| ||||| | || || || | || | ||| | || | |||||| ||
Sbjct 761247 AGTTCATCCCGATGAGATTCACTGGCAAGGCCTCTGTGAGGAACTCCTGTTCTATCCTGA 761306
Query 21408 CGGCTTCAACAATTATATTTATTATCCTA-GATGTACTAGGGGGATACAATAATTGTTTA 21466
| || | |||||||| | | | | || | | | ||| || | | |||||
Sbjct 761307 CTGCATTGACAATTATTTCTCTGACTCTCTGCTCCAA-AGGTTTATGTACCAGATGTTTG 761365
Query 21467 AACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAA 21526
||||| ||||| |||||||||||||| | || ||||| || || |||| | ||| |||
Sbjct 761366 AACATTAAACACGCAAAATCACAATGGAGTCCCTCATCTCTGCTAATTAGCTTATTCGAA 761425
Query 21527 AATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCT 21586
||||| | ||| ||||| ||||||| || || | ||| ||||| || ||||| | ||
Sbjct 761426 AATGTAAGACCAGGCATCAATCCTCGTTTCTTAAGCCAGAATATGGATGCAAAAGAACCA 761485
Query 21587 GAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCT 21646
||| |||| || || || || || ||| || ||| |||| || || || | ||||
Sbjct 761486 GAATAGAAGATTCCTTCCACTGCTCTAAAGGCTCCTACATGTTCTCCATAGGTGGCTTCT 761545
Query 21647 TTATCCAATATCCATTTTTCTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTATC 21705
|| ||| ||||| ||||| | |||||| |||||| | |||| ||||| ||
Sbjct 761546 TTGTCCCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTT-ACACAAGGCATTGTCTC 761604
Query 21706 AATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNN 21765
|||||| || |||| || || | ||| | | | |
Sbjct 761605 AATAGCGTT--GAAGAGGA---ATTCCCTCTCTTTGGAATCTTTAAGTATCGATGAGGAG 761659
Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825
||| ||||||||||| ||||| ||||| || || ||||| || || || ||||| || ||
Sbjct 761660 ACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCTGGC 761719
Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885
|||| | ||||| || ||| || | | ||||||||||| ||||| |||||
Sbjct 761720 TTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACAAAGTTTTCATTCACTATGCCATC 761779
Query 21886 ACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTT 21945
|||||| || || || |||| | || ||||||||||| || | | | | |
Sbjct 761780 ACTGGCCGCGAAGAAAGCCAGCACATGGGATATAAAATATCTCTCCTCAGGTTTCAGGGC 761839
Query 21946 TTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAAT 22005
| ||| | | || || || | || || || |||| |||||||| |||
Sbjct 761840 CTCCCAGTGCTGGATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAGTGAAGCCTC 761899
Query 22006 AGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAA 22059
|| || |||||||| ||| ||||||| ||| || ||||| || |||||
Sbjct 761900 GGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATGGGAAAGATGACAAA 761953
>seq92
Length=5367877
Score = 89.7 bits (98), Expect = 5e-13
Identities = 94/124 (76%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 21498 CTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTT 21557
||||||| || || || | ||||| ||||| || | || ||||| | ||||| ||||
Sbjct 3850916 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGGCCTCTTTTTT 3850857
Query 21558 TTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATG 21617
||| ||||||||| | || || | ||||||||||||||| || || || ||||| || |
Sbjct 3850856 TTAGCCAAAATATAGCAGCGAAAGATCCTGAAAAGAAAATTCCTTCTACAGCAGCGAAGG 3850797
Query 21618 CAAC 21621
| ||
Sbjct 3850796 CTAC 3850793
>seq43
Length=7124368
Score = 82.4 bits (90), Expect = 8e-11
Identities = 100/133 (75%), Gaps = 5/133 (4%)
Strand=Plus/Minus
Query 130658 TTCTTCC---GTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCC 130714
||||||| ||||||| | ||||||| | ||| | ||||| ||| || || ||| |
Sbjct 2869366 TTCTTCCAGGGTTTCAATCTGAACAAGATTAGCTTCATATGAATCACAGAA-GTCTTGGC 2869308
Query 130715 A-AATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCC 130773
|||||||||| ||| ||||||||||||||||| ||||| ||||| ||||||||
Sbjct 2869307 TTAATGTCCAATCCCTTGTGTCTTCAGAAAAGTAAAAACATTTGGTTCCAAGTCCAATCC 2869248
Query 130774 ATCCCTTTGGGCA 130786
|| | ||||||
Sbjct 2869247 ATGTATCTGGGCA 2869235
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531862217245720
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