Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq30 120 8e-22 seq602 107 5e-18 seq446 96.9 9e-15 seq418 95.1 3e-14 seq339 91.5 4e-13 seq92 84.2 6e-11 >seq30 Length=8517879 Score = 120 bits (132), Expect = 8e-22 Identities = 157/215 (73%), Gaps = 7/215 (3%) Strand=Plus/Plus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAA--CGTTCATTCGCGG 22489 ||||| |||||||||||||| || ||||| | |||| ||| | ||| | | Sbjct 2591450 AAGAAGAAGGCAGATTGGGCCTTGTGTTGGATTGGGGACAAAGAAGCCACCCAT--GGAG 2591507 Query 22490 AACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAA 22549 || || | | || ||||| | |||||||| || ||||||||||| | ||| | | Sbjct 2591508 AATGTGTAGTAGCCTTTGCAGCAGTTGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCCA 2591567 Query 22550 TCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTA 22609 | || ||||| || ||||| | | | ||||| ||||| || ||||| |||||| |||||| Sbjct 2591568 TATTCTGGCTCAAGAAACGAGGACTGATGCCCGGTCTTACATTTTCGAATGAGCTAATTA 2591627 Query 22610 GCCGAGATGAGGGTCTTCATACCGATTTTGCGTGT 22644 || |||||||||| || ||| |||||||||||| Sbjct 2591628 GCAGAGATGAGGGACTCCATTGTGATTTTGCGTGT 2591662 >seq602 Length=1640730 Score = 107 bits (118), Expect = 5e-18 Identities = 152/213 (71%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCATTCGCGGAA 22491 ||||| |||||||||||||| || | ||||| | |||| ||| | | | ||| Sbjct 122663 AAGAAGAAGGCAGATTGGGCCTTGCATTGGATTGGGGACAAAGAAGCCACCTATGGAGAA 122604 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551 || | | || ||||| | || ||||| || ||||||||| | | ||| | || Sbjct 122603 TGTGTAGTAGCCTTTGCAGCAGTGGAAGGAATCTTCTTTTCTAGTTCTTTTGCATCCATA 122544 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611 || ||||| || ||||| | | | ||||| ||||| || ||||| |||| |||||||| Sbjct 122543 TTCTGGCTCAAGAAACGAGGATTGATGCCTGGTCTTACATTTTCGAATGCACTAATTAGC 122484 Query 22612 CGAGATGAGGGTCTTCATACCGATTTTGCGTGT 22644 |||||||||| || ||| |||||||||||| Sbjct 122483 AGAGATGAGGGACTCCATTGTGATTTTGCGTGT 122451 >seq446 Length=2046506 Score = 96.9 bits (106), Expect = 9e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 |||||| | | || ||||| | || ||||| || ||||||||||| | ||| | Sbjct 492478 GAACGTGTAGTAGCCTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCC 492537 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 || || ||||| || ||||| | | | ||||| ||||| || |||||||||||| ||||| Sbjct 492538 ATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGTCTTACATTTTCAAATGAGCTAATT 492597 Query 22609 AGCCGAGATGAGG 22621 ||| ||||||||| Sbjct 492598 AGCAGAGATGAGG 492610 >seq418 Length=2079112 Score = 95.1 bits (104), Expect = 3e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 22513 GTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCA 22572 || ||||| || |||| |||||| | ||| | || || ||||| || ||||| | | Sbjct 761505 GTGGAAGGAATCTTCTATTCTGGTTCTTTTGCATCCATATTCTGGCTTAAGAAACGAGGA 761446 Query 22573 ATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACC 22632 | ||||| ||||| || ||||| ||| || |||||||| |||||||||| || ||| Sbjct 761445 TTGATGCCTGGTCTTACATTTTCGAATAAGCTAATTAGCAGAGATGAGGGACTCCATTGT 761386 Query 22633 GATTTTGCGTGT 22644 |||||||||||| Sbjct 761385 GATTTTGCGTGT 761374 >seq339 Length=2552696 Score = 91.5 bits (100), Expect = 4e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||| |||| || || |||| ||||| || || ||||| ||| Sbjct 2045243 GCTCAGCAGCTCTGGTACGCCGTCATCGAGTCTCAGACAGAGACGGGCACCCCCTACATG 2045302 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| ||||| || ||| |||||||||| |||| || || || | Sbjct 2045303 CTCTACAAAGATTCTTGCAATCGGAAGAGCAACCAGCAGAACCTGGGAACCATCAAATGC 2045362 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 ||||| || || || || || | || |||||| Sbjct 2045363 AGCAATCTGTGCACAGAAGTTGTAGAGTACACC 2045395 >seq92 Length=5367877 Score = 84.2 bits (92), Expect = 6e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 22501 GCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTa 22560 || || |||| || ||||| ||||||||||| ||| | || ||| || ||||||||| Sbjct 3850796 GCCTTCGCTGCTGTAGAAGGAATTTTCTTTTCAGGATCTTTCGCTGCTATATTTTGGCTA 3850855 Query 22561 aaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGA 22619 |||||| | | | ||||| || || || ||||| |||||| | || ||| ||||||| Sbjct 3850856 AAAAAAAGAGGCCTCATGCCTGGACTCACTTTTTCCAATGAGCTCATCAGCAGAGATGA 3850914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303256694437946