Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq30 120 8e-22
seq602 107 5e-18
seq446 96.9 9e-15
seq418 95.1 3e-14
seq339 91.5 4e-13
seq92 84.2 6e-11
>seq30
Length=8517879
Score = 120 bits (132), Expect = 8e-22
Identities = 157/215 (73%), Gaps = 7/215 (3%)
Strand=Plus/Plus
Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAA--CGTTCATTCGCGG 22489
||||| |||||||||||||| || ||||| | |||| ||| | ||| | |
Sbjct 2591450 AAGAAGAAGGCAGATTGGGCCTTGTGTTGGATTGGGGACAAAGAAGCCACCCAT--GGAG 2591507
Query 22490 AACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAA 22549
|| || | | || ||||| | |||||||| || ||||||||||| | ||| | |
Sbjct 2591508 AATGTGTAGTAGCCTTTGCAGCAGTTGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCCA 2591567
Query 22550 TCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTA 22609
| || ||||| || ||||| | | | ||||| ||||| || ||||| |||||| ||||||
Sbjct 2591568 TATTCTGGCTCAAGAAACGAGGACTGATGCCCGGTCTTACATTTTCGAATGAGCTAATTA 2591627
Query 22610 GCCGAGATGAGGGTCTTCATACCGATTTTGCGTGT 22644
|| |||||||||| || ||| ||||||||||||
Sbjct 2591628 GCAGAGATGAGGGACTCCATTGTGATTTTGCGTGT 2591662
>seq602
Length=1640730
Score = 107 bits (118), Expect = 5e-18
Identities = 152/213 (71%), Gaps = 3/213 (1%)
Strand=Plus/Minus
Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCATTCGCGGAA 22491
||||| |||||||||||||| || | ||||| | |||| ||| | | | |||
Sbjct 122663 AAGAAGAAGGCAGATTGGGCCTTGCATTGGATTGGGGACAAAGAAGCCACCTATGGAGAA 122604
Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551
|| | | || ||||| | || ||||| || ||||||||| | | ||| | ||
Sbjct 122603 TGTGTAGTAGCCTTTGCAGCAGTGGAAGGAATCTTCTTTTCTAGTTCTTTTGCATCCATA 122544
Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611
|| ||||| || ||||| | | | ||||| ||||| || ||||| |||| ||||||||
Sbjct 122543 TTCTGGCTCAAGAAACGAGGATTGATGCCTGGTCTTACATTTTCGAATGCACTAATTAGC 122484
Query 22612 CGAGATGAGGGTCTTCATACCGATTTTGCGTGT 22644
|||||||||| || ||| ||||||||||||
Sbjct 122483 AGAGATGAGGGACTCCATTGTGATTTTGCGTGT 122451
>seq446
Length=2046506
Score = 96.9 bits (106), Expect = 9e-15
Identities = 101/133 (76%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548
|||||| | | || ||||| | || ||||| || ||||||||||| | ||| |
Sbjct 492478 GAACGTGTAGTAGCCTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCC 492537
Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608
|| || ||||| || ||||| | | | ||||| ||||| || |||||||||||| |||||
Sbjct 492538 ATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGTCTTACATTTTCAAATGAGCTAATT 492597
Query 22609 AGCCGAGATGAGG 22621
||| |||||||||
Sbjct 492598 AGCAGAGATGAGG 492610
>seq418
Length=2079112
Score = 95.1 bits (104), Expect = 3e-14
Identities = 100/132 (76%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 22513 GTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCA 22572
|| ||||| || |||| |||||| | ||| | || || ||||| || ||||| | |
Sbjct 761505 GTGGAAGGAATCTTCTATTCTGGTTCTTTTGCATCCATATTCTGGCTTAAGAAACGAGGA 761446
Query 22573 ATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACC 22632
| ||||| ||||| || ||||| ||| || |||||||| |||||||||| || |||
Sbjct 761445 TTGATGCCTGGTCTTACATTTTCGAATAAGCTAATTAGCAGAGATGAGGGACTCCATTGT 761386
Query 22633 GATTTTGCGTGT 22644
||||||||||||
Sbjct 761385 GATTTTGCGTGT 761374
>seq339
Length=2552696
Score = 91.5 bits (100), Expect = 4e-13
Identities = 112/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170
|| ||| |||| |||| ||| |||| || || |||| ||||| || || ||||| |||
Sbjct 2045243 GCTCAGCAGCTCTGGTACGCCGTCATCGAGTCTCAGACAGAGACGGGCACCCCCTACATG 2045302
Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230
| ||||||||||| ||||| || ||| |||||||||| |||| || || || |
Sbjct 2045303 CTCTACAAAGATTCTTGCAATCGGAAGAGCAACCAGCAGAACCTGGGAACCATCAAATGC 2045362
Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263
||||| || || || || || | || ||||||
Sbjct 2045363 AGCAATCTGTGCACAGAAGTTGTAGAGTACACC 2045395
>seq92
Length=5367877
Score = 84.2 bits (92), Expect = 6e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 22501 GCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTa 22560
|| || |||| || ||||| ||||||||||| ||| | || ||| || |||||||||
Sbjct 3850796 GCCTTCGCTGCTGTAGAAGGAATTTTCTTTTCAGGATCTTTCGCTGCTATATTTTGGCTA 3850855
Query 22561 aaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGA 22619
|||||| | | | ||||| || || || ||||| |||||| | || ||| |||||||
Sbjct 3850856 AAAAAAAGAGGCCTCATGCCTGGACTCACTTTTTCCAATGAGCTCATCAGCAGAGATGA 3850914
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303256694437946
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |