Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq24 86.0 5e-12
seq418 84.2 2e-11
>seq24
Length=8999101
Score = 86.0 bits (94), Expect = 5e-12
Identities = 161/233 (69%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046
||| ||||| | || || || || | ||||| || | || || |||| |||||| |
Sbjct 2890730 CAAGATGCAGATTTTCGTGAAGACCCTCACTGGGAAGACCATCACGCTCGAGGTCGAGCC 2890671
Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106
| || || || ||| | || ||| ||||| || ||||||||||| ||||| ||
Sbjct 2890670 CTCAGATACTATAGAGAATGTGAAAGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGA 2890611
Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAAC-GTCAGCGAT 24164
|| || | ||||||| | |||||||| || |||||| | || | | ||| ||
Sbjct 2890610 CCAGCAACGTCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCATACTCTGTC--GGAC 2890553
Query 24165 TATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217
|| ||||||||||| || || ||| ||||| | || || ||| || | || ||
Sbjct 2890552 TACAACATTCAAAAGGAGTCCACACTTCATCTTGTTTTGAGACTGCGTGGTGG 2890500
>seq418
Length=2079112
Score = 84.2 bits (92), Expect = 2e-11
Identities = 106/143 (74%), Gaps = 2/143 (1%)
Strand=Plus/Plus
Query 104593 TATTCGCCTACTCGTTTTTCaaaaaaaTTAGTCTTGCCCTCCAGAGAAATATTATTCATA 104652
|| || ||||||| || ||||| || ||||| ||||| |||| ||||| || | ||||
Sbjct 761090 TACTCCCCTACTCTCTTCTCAAAGAAGTTAGTTTTGCCTTCCAATGAAATGTTCTCCATA 761149
Query 104653 AATTCGAAAGGATTCAA-AGTCTTAAAATATTTTTCGTAGCCAAGCTCGATCAACAGTCG 104711
|| || || |||||| | ||| |||| || | | |||| ||||| | | ||||
Sbjct 761150 AAGTCAAATGGATTCTCTACTCTGAAAACCTTGCT-GAAGCCCAGCTCCAGTATAAGTCT 761208
Query 104712 ATCCGCCACAAATTCGATGTACT 104734
|||||||||||||| |||||||
Sbjct 761209 GTCCGCCACAAATTCAATGTACT 761231
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429905593179465
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |