Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq24 86.0 5e-12 seq418 84.2 2e-11 >seq24 Length=8999101 Score = 86.0 bits (94), Expect = 5e-12 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || || || || | ||||| || | || || |||| |||||| | Sbjct 2890730 CAAGATGCAGATTTTCGTGAAGACCCTCACTGGGAAGACCATCACGCTCGAGGTCGAGCC 2890671 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | || || || ||| | || ||| ||||| || ||||||||||| ||||| || Sbjct 2890670 CTCAGATACTATAGAGAATGTGAAAGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGA 2890611 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAAC-GTCAGCGAT 24164 || || | ||||||| | |||||||| || |||||| | || | | ||| || Sbjct 2890610 CCAGCAACGTCTGATTTTTGCTGGCAAGCAGCTGGAAGATGGGCATACTCTGTC--GGAC 2890553 Query 24165 TATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || ||||||||||| || || ||| ||||| | || || ||| || | || || Sbjct 2890552 TACAACATTCAAAAGGAGTCCACACTTCATCTTGTTTTGAGACTGCGTGGTGG 2890500 >seq418 Length=2079112 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 104593 TATTCGCCTACTCGTTTTTCaaaaaaaTTAGTCTTGCCCTCCAGAGAAATATTATTCATA 104652 || || ||||||| || ||||| || ||||| ||||| |||| ||||| || | |||| Sbjct 761090 TACTCCCCTACTCTCTTCTCAAAGAAGTTAGTTTTGCCTTCCAATGAAATGTTCTCCATA 761149 Query 104653 AATTCGAAAGGATTCAA-AGTCTTAAAATATTTTTCGTAGCCAAGCTCGATCAACAGTCG 104711 || || || |||||| | ||| |||| || | | |||| ||||| | | |||| Sbjct 761150 AAGTCAAATGGATTCTCTACTCTGAAAACCTTGCT-GAAGCCCAGCTCCAGTATAAGTCT 761208 Query 104712 ATCCGCCACAAATTCGATGTACT 104734 |||||||||||||| ||||||| Sbjct 761209 GTCCGCCACAAATTCAATGTACT 761231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429905593179465