Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq24 113 4e-20
seq339 89.7 5e-13
>seq24
Length=8999101
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| |||| | || || | ||| | || |||||||||||||||||||| || |
Sbjct 2890500 CCACCACGCAGTCTCAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCCGAC 2890559
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || || || || ||||||||||| || | || | ||| |||||||| |||||
Sbjct 2890560 AGAGTATGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGGA 2890619
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| |||||||| || ||| || || | | ||| | |||||| | || |||||
Sbjct 2890620 ATGCCTTCTTTATCCTGGATCTTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGACC 2890679
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| || | ||| || || || || || || ||||||||||||||
Sbjct 2890680 TCGAGCGTGATGGTCTTCCCAGTGAGGGTCTTCACGAAAATCTGCAT 2890726
>seq339
Length=2552696
Score = 89.7 bits (98), Expect = 5e-13
Identities = 87/112 (78%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727
|||| | ||| | || | ||||| |||||| ||||||||||||||||| || ||||| |
Sbjct 2045393 TGTACTCTACAACTTCTGTGCACAGATTGCTGCATTTGATGGTTCCCAGGTTCTGCTGGT 2045334
Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTC 145779
| || |||| ||||| | || |||||||||||||| || ||| |||||
Sbjct 2045333 TGCTCTTCCGATTGCAAGAATCTTTGTAGAGCATGTAGGGGGTGCCCGTCTC 2045282
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471978561371520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |