Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2 113 3e-20 seq226 104 2e-17 seq24 104 2e-17 seq83 98.7 7e-16 seq198 95.1 8e-15 seq69 95.1 8e-15 seq1172 93.3 3e-14 seq7 89.7 3e-13 seq525 86.0 4e-12 seq297 86.0 4e-12 seq115 86.0 4e-12 seq1 84.2 1e-11 seq436 82.4 5e-11 >seq2 Length=16010500 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||| |||||||||||||| | |||||||| ||||| || |||||||| Sbjct 2529985 AAGCCCATTCCCCTGGCTGTGGTTTCGTTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 2529926 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 2529925 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 2529891 >seq226 Length=3478930 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 406945 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 407004 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 407005 GCCGGTATTTAGCCTTA 407021 >seq24 Length=8999101 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| ||||||||||||||||||| || ||||||||| ||||| || |||||| | Sbjct 7107126 AAGCCTGTTCCCTTGGCTGTGGTTTTGCCAGATAGTAGGTAGGGACAGTGGGAATCTCAT 7107185 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||| || ||||||||||||||||||| Sbjct 7107186 TCATCCATTCATACGTGTCACTAATTAGATGACGA 7107220 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || | ||| || | |||||| ||| |||||||||||| ||||| || || Sbjct 2890499 ACCACCACGCAGTCTCAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCCGA 2890558 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || | | | | || || | || || || ||||| || || ||||| || || | || Sbjct 2890559 CAGAGTATGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGG 2890618 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||||||| ||| || || |||||||||| | ||||||| || || Sbjct 2890619 AATGCCTTCTTTATCCTGGATCTTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGAC 2890678 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || || || || || || | ||| |||||||| |||||||| || Sbjct 2890679 CTCGAGCGTGATGGTCTTCCCAGTGAGGGTCTTCACGAAAATCTGCATCTT 2890729 >seq83 Length=5509936 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||| Sbjct 4199292 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTATTTGTTGACTATCGGTCTCGT 4199351 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 4199352 GCCGGTATTTAGCCTTA 4199368 >seq198 Length=3721735 Score = 95.1 bits (104), Expect = 8e-15 Identities = 69/78 (88%), Gaps = 3/78 (4%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT-CG 20005 |||||||||||||||||||||||||||||||| |||||||||||| ||||| |||| | Sbjct 2284190 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCTGTCTGTG 2284249 Query 20006 CGGTAATATTTAGCCTTA 20023 ||| |||||||||||| Sbjct 2284250 CGG--GTATTTAGCCTTA 2284265 >seq69 Length=5819575 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||| Sbjct 3456518 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGAACTTGTTGACTATCGGTCTCAT 3456459 Query 20007 GGTAATATTTAGCCTTA 20023 | | | |||||||||| Sbjct 3456458 GCTGGTTTTTAGCCTTA 3456442 >seq1172 Length=354277 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19948 TCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCG 20007 ||||||||||||||||||||||||||||||| | ||||||| || |||| ||||| | | Sbjct 36801 TCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTACTTCTTAACTATTGGTCTTGTG 36742 Query 20008 GTAATATTTAGCCTTA 20023 | ||||||||||||| Sbjct 36741 CTGATATTTAGCCTTA 36726 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 19948 TCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCG 20007 |||||||||||||||||||||||||||| || | |||||||||| |||||||||| | | Sbjct 317991 TCTCTCTTCAAAGTTCTTTTCAACTTTCTCTTATGGTACTTGTTGACTATCGGTCT-GTG 318049 Query 20008 GTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 318050 CTGGTATTTAGCCTTA 318065 >seq7 Length=11971544 Score = 89.7 bits (98), Expect = 3e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 19950 TCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGT 20009 ||||||||||||||||||||||||||||| | ||| |||||| ||||||||||| | | Sbjct 10454674 TCTCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTGCTTGTTGACTATCGGTCTCCTGCT 10454615 Query 20010 AATATTTAGCCTTA 20023 |||||||||||| Sbjct 10454614 GGTATTTAGCCTTA 10454601 >seq525 Length=1586369 Score = 86.0 bits (94), Expect = 4e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||| |||||||||||||||||||||| |||||||||||| ||||| |||||| Sbjct 892574 CTCTCTCTT-AAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCAGTCTCGT 892632 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||| |||| Sbjct 892633 GCCGGTATTTAGTCTTA 892649 >seq297 Length=3208989 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||| ||||||||||||||| | |||||||||| ||||| ||||| Sbjct 3193195 CTCTCTCTTCAAAGTTTTTTTCAACTTTCCCTTATGGTACTTGTTGACTATCAGTCTCAT 3193254 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 3193255 GCCGGTATTTAGCCTTA 3193271 >seq115 Length=4841617 Score = 86.0 bits (94), Expect = 4e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 19954 TTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATA 20013 ||||||||||||||||||||||||| | |||||||||| ||||| |||||| | | || Sbjct 921559 TTCAAAGTTCTTTTCAACTTTCCCTTATGGTACTTGTTGACTATCAGTCTCGTGCCAGTA 921500 Query 20014 TTTAGCCTTA 20023 |||||||||| Sbjct 921499 TTTAGCCTTA 921490 >seq1 Length=17429815 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 19950 TCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGT 20009 |||||||||||||||||||||||||| || || ||||||||| || | ||||||| | | Sbjct 15421301 TCTCTTCAAAGTTCTTTTCAACTTTCACTTACTGTACTTGTTGACTGTTGGTCTCGTGCT 15421360 Query 20010 AATATTTAGCCTTA 20023 |||||||||||| Sbjct 15421361 GGTATTTAGCCTTA 15421374 >seq436 Length=1974671 Score = 82.4 bits (90), Expect = 5e-11 Identities = 54/59 (92%), Gaps = 3/59 (5%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005 |||||||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 1157598 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTG---ACTATCGGTCTCG 1157543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334923511173293