Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq2 113 3e-20
seq226 104 2e-17
seq24 104 2e-17
seq83 98.7 7e-16
seq198 95.1 8e-15
seq69 95.1 8e-15
seq1172 93.3 3e-14
seq7 89.7 3e-13
seq525 86.0 4e-12
seq297 86.0 4e-12
seq115 86.0 4e-12
seq1 84.2 1e-11
seq436 82.4 5e-11
>seq2
Length=16010500
Score = 113 bits (124), Expect = 3e-20
Identities = 82/95 (86%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||| ||||| |||||||||||||| | |||||||| ||||| || ||||||||
Sbjct 2529985 AAGCCCATTCCCCTGGCTGTGGTTTCGTTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 2529926
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 2529925 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 2529891
>seq226
Length=3478930
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 406945 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 407004
Query 20007 GGTAATATTTAGCCTTA 20023
| ||||||||||||
Sbjct 407005 GCCGGTATTTAGCCTTA 407021
>seq24
Length=8999101
Score = 104 bits (114), Expect = 2e-17
Identities = 80/95 (84%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||| ||||||||||||||||||| || ||||||||| ||||| || |||||| |
Sbjct 7107126 AAGCCTGTTCCCTTGGCTGTGGTTTTGCCAGATAGTAGGTAGGGACAGTGGGAATCTCAT 7107185
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||| || |||||||||||||||||||
Sbjct 7107186 TCATCCATTCATACGTGTCACTAATTAGATGACGA 7107220
Score = 96.9 bits (106), Expect = 2e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||| | || | ||| || | |||||| ||| |||||||||||| ||||| || ||
Sbjct 2890499 ACCACCACGCAGTCTCAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCCGA 2890558
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
|| | | | | || || | || || || ||||| || || ||||| || || | ||
Sbjct 2890559 CAGAGTATGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGG 2890618
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
| ||||||||| ||| || || |||||||||| | ||||||| || ||
Sbjct 2890619 AATGCCTTCTTTATCCTGGATCTTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGAC 2890678
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| | || || || || || || | ||| |||||||| |||||||| ||
Sbjct 2890679 CTCGAGCGTGATGGTCTTCCCAGTGAGGGTCTTCACGAAAATCTGCATCTT 2890729
>seq83
Length=5509936
Score = 98.7 bits (108), Expect = 7e-16
Identities = 68/77 (88%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||
Sbjct 4199292 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTATTTGTTGACTATCGGTCTCGT 4199351
Query 20007 GGTAATATTTAGCCTTA 20023
| ||||||||||||
Sbjct 4199352 GCCGGTATTTAGCCTTA 4199368
>seq198
Length=3721735
Score = 95.1 bits (104), Expect = 8e-15
Identities = 69/78 (88%), Gaps = 3/78 (4%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT-CG 20005
|||||||||||||||||||||||||||||||| |||||||||||| ||||| |||| |
Sbjct 2284190 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCTGTCTGTG 2284249
Query 20006 CGGTAATATTTAGCCTTA 20023
||| ||||||||||||
Sbjct 2284250 CGG--GTATTTAGCCTTA 2284265
>seq69
Length=5819575
Score = 95.1 bits (104), Expect = 8e-15
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||
Sbjct 3456518 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGAACTTGTTGACTATCGGTCTCAT 3456459
Query 20007 GGTAATATTTAGCCTTA 20023
| | | ||||||||||
Sbjct 3456458 GCTGGTTTTTAGCCTTA 3456442
>seq1172
Length=354277
Score = 93.3 bits (102), Expect = 3e-14
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 19948 TCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCG 20007
||||||||||||||||||||||||||||||| | ||||||| || |||| ||||| | |
Sbjct 36801 TCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTACTTCTTAACTATTGGTCTTGTG 36742
Query 20008 GTAATATTTAGCCTTA 20023
| |||||||||||||
Sbjct 36741 CTGATATTTAGCCTTA 36726
Score = 89.7 bits (98), Expect = 3e-13
Identities = 66/76 (87%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 19948 TCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCG 20007
|||||||||||||||||||||||||||| || | |||||||||| |||||||||| | |
Sbjct 317991 TCTCTCTTCAAAGTTCTTTTCAACTTTCTCTTATGGTACTTGTTGACTATCGGTCT-GTG 318049
Query 20008 GTAATATTTAGCCTTA 20023
| ||||||||||||
Sbjct 318050 CTGGTATTTAGCCTTA 318065
>seq7
Length=11971544
Score = 89.7 bits (98), Expect = 3e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 19950 TCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGT 20009
||||||||||||||||||||||||||||| | ||| |||||| ||||||||||| | |
Sbjct 10454674 TCTCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTGCTTGTTGACTATCGGTCTCCTGCT 10454615
Query 20010 AATATTTAGCCTTA 20023
||||||||||||
Sbjct 10454614 GGTATTTAGCCTTA 10454601
>seq525
Length=1586369
Score = 86.0 bits (94), Expect = 4e-12
Identities = 66/77 (86%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
||||||||| |||||||||||||||||||||| |||||||||||| ||||| ||||||
Sbjct 892574 CTCTCTCTT-AAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCAGTCTCGT 892632
Query 20007 GGTAATATTTAGCCTTA 20023
| ||||||| ||||
Sbjct 892633 GCCGGTATTTAGTCTTA 892649
>seq297
Length=3208989
Score = 86.0 bits (94), Expect = 4e-12
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||| ||||||||||||||| | |||||||||| ||||| |||||
Sbjct 3193195 CTCTCTCTTCAAAGTTTTTTTCAACTTTCCCTTATGGTACTTGTTGACTATCAGTCTCAT 3193254
Query 20007 GGTAATATTTAGCCTTA 20023
| ||||||||||||
Sbjct 3193255 GCCGGTATTTAGCCTTA 3193271
>seq115
Length=4841617
Score = 86.0 bits (94), Expect = 4e-12
Identities = 61/70 (87%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 19954 TTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATA 20013
||||||||||||||||||||||||| | |||||||||| ||||| |||||| | | ||
Sbjct 921559 TTCAAAGTTCTTTTCAACTTTCCCTTATGGTACTTGTTGACTATCAGTCTCGTGCCAGTA 921500
Query 20014 TTTAGCCTTA 20023
||||||||||
Sbjct 921499 TTTAGCCTTA 921490
>seq1
Length=17429815
Score = 84.2 bits (92), Expect = 1e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 19950 TCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGT 20009
|||||||||||||||||||||||||| || || ||||||||| || | ||||||| | |
Sbjct 15421301 TCTCTTCAAAGTTCTTTTCAACTTTCACTTACTGTACTTGTTGACTGTTGGTCTCGTGCT 15421360
Query 20010 AATATTTAGCCTTA 20023
||||||||||||
Sbjct 15421361 GGTATTTAGCCTTA 15421374
>seq436
Length=1974671
Score = 82.4 bits (90), Expect = 5e-11
Identities = 54/59 (92%), Gaps = 3/59 (5%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 1157598 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTG---ACTATCGGTCTCG 1157543
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334923511173293
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |