Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq30 297 2e-75
seq602 284 1e-71
seq418 279 6e-70
seq446 107 2e-18
>seq30
Length=8517879
Score = 297 bits (328), Expect = 2e-75
Identities = 458/648 (71%), Gaps = 7/648 (1%)
Strand=Plus/Minus
Query 93062 GGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCT 93121
||||| |||| | || ||| ||||||| |||||||| || ||| | || || |||
Sbjct 2591691 GGTTTATGTAGCAGATGTTTGAACATTAAACACGCAAAATCACAATGGAGTCCCTCATCT 2591632
Query 93122 CGTGATA-TCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCA 93180
| || || | | |||||| ||||| | ||| || | |||||||||||||||||||||
Sbjct 2591631 C-TGCTAATTAGCTCATTCGAAAATGTAAGACCGGGCATCAGTCCTCGTTTCTTGAGCCA 2591573
Query 93181 AAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAAT 93240
||||| || |||||| ||||||||| || || ||||| || |||||||| || || |
Sbjct 2591572 GAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAGGCTACTAC 2591513
Query 93241 ACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTT 93300
|| ||| || | || || | ||||| || |||||||| || || ||
Sbjct 2591512 ACATTCTCCATGGGTGGCTTCTTTGTCCCCAATCCAACACAAGGCCCAATCTGCCTTCTT 2591453
Query 93301 CTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCG 93360
||| | |||||| | ||| || |||||||| || ||| | || | ||| | ||||||
Sbjct 2591452 CTTTACACAAGGCATTGTCTCAATAGCGTTGAAGAGGAATTCCCTCTCTTTGGAATCTTT 2591393
Query 93361 TATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTG 93420
| ||| |||||||| | ||| ||||||||||| || | || ||||| ||||| ||
Sbjct 2591392 AACGTAAGTATCGATGAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTG 2591333
Query 93421 GAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAG 93480
||| || |||||||| | ||||| || ||||| |||||||| ||| | ||| || |
Sbjct 2591332 GAAGCCATAGAAACAGCAGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAA 2591273
Query 93481 ATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATG 93540
|||||| | ||||| ||||| ||||| || ||||||| | ||| ||||||||
Sbjct 2591272 GTTTTCACTCACTATGCCATCACTGGCTGCGAAGAAAGCCAGGACATGGGATATAAAATA 2591213
Query 93541 TTTCTCATCATCTTT-AAGCTTATCCCAAT--CGGATAGATCTTTTGAAAGATCGACTTC 93597
| |||| ||| ||| | | ||||| | |||| || | ||||| || || ||
Sbjct 2591212 TCTCTCCTCAGGTTTCAGGGGCCTCCCAGTGCTGGAT--GTCCCTGGAAAGGTCCACCTC 2591155
Query 93598 TTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTG 93657
|| | |||||||| || || || || || || ||||| | ||| || || || ||||
Sbjct 2591154 CTCAGCTGTCCAAAATGAGGCCTCGGCCTTCTTATACATCTGCCAGATATCATGGTATTC 2591095
Query 93658 AATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705
|| ||||| |||||||| ||| ||||| ||| |||| | |||||
Sbjct 2591094 GATGGGAAAGATGACAAAGCGACGGGGGTTTTCTCTTAGGAGTGGCTC 2591047
>seq602
Length=1640730
Score = 284 bits (314), Expect = 1e-71
Identities = 439/621 (71%), Gaps = 7/621 (1%)
Strand=Plus/Plus
Query 93062 GGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCT 93121
||||| |||| | || ||| ||||||| |||||||| || ||| | || || |||
Sbjct 122423 GGTTTATGTAGCAGATGTTTGAACATTAA-CACGCAAAATCACAATGGAGTCCCTCATCT 122481
Query 93122 CGTGATATCAACT-CATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCA 93180
| || || | | |||| ||||| | ||| || | || ||||||||||||||||||
Sbjct 122482 C-TGCTAATTAGTGCATTCGAAAATGTAAGACCAGGCATCAATCCTCGTTTCTTGAGCCA 122540
Query 93181 AAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAAT 93240
||||| || |||||| || |||||| || || |||||||| |||||||| || || |
Sbjct 122541 GAATATGGATGCAAAAGAACTAGAAAAGAAGATTCCTTCCACTGCTGCAAAGGCTACTAC 122600
Query 93241 ACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTT 93300
|| ||| || | | || || | ||||| | || |||||||| || || ||
Sbjct 122601 ACATTCTCCATAGGTGGCTTCTTTGTCCCCAATCCAATGCAAGGCCCAATCTGCCTTCTT 122660
Query 93301 CTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCG 93360
||| | |||||| | ||| || |||||||| || ||| | || | ||| | |||| |
Sbjct 122661 CTTTACACAAGGCATTGTCTCAATAGCGTTGAAGAGGAATTCCCTCTCTTTGGAATGTTT 122720
Query 93361 TATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTG 93420
||||| |||||||| | ||| ||||||||||| || | || ||||| ||||| ||
Sbjct 122721 AATGTAAGTATCGATGAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTG 122780
Query 93421 GAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAG 93480
||| || |||||||| | ||||| || ||||| |||||||| ||| | || || |
Sbjct 122781 GAAGCCATAGAAACAGCAGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTTCACCAA 122840
Query 93481 ATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATG 93540
|||||||| ||||| ||||| || || |||||||| | | ||| ||||||||
Sbjct 122841 GTTTTCATTCACTATTCCATCACTGGCCGCGAAAAAAGCAAGCACATGGGATATAAAATA 122900
Query 93541 TTTCTCATCATCTTTAAGCTTATCCCAAT--CGGATAGATCTTTTGAAAGATCGACTTCT 93598
| |||| ||| ||| || ||||| | |||| || || ||||| || || ||
Sbjct 122901 TCTCTCCTCAGGTTTCAGGGCCTCCCAGTGCTGGAT--GTCCTTGGAAAGGTCCACCTCC 122958
Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGA 93658
|| | |||||||| || || || || || || ||||| | ||| || || || ||||
Sbjct 122959 TCAGCTGTCCAAAATGAGGCCTCGGCCTTCTTATACATCTGCCAGATATCATGGTATTTG 123018
Query 93659 ATTGGAAATATGACAAAACGA 93679
|| ||||| |||||||| |||
Sbjct 123019 ATGGGAAAGATGACAAAGCGA 123039
>seq418
Length=2079112
Score = 279 bits (308), Expect = 6e-70
Identities = 542/792 (68%), Gaps = 14/792 (2%)
Strand=Plus/Plus
Query 92919 ATAA-TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977
|||| ||| || || |||||||| |||||||| ||| ||| || ||||| || |
Sbjct 761201 ATAAGTCTGTCCGCCACAAATTCAATGTACTGCTTCATTAAAGTGCAGTTCATCCCGATG 761260
Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037
||| || || | || || || | ||| || | || || || || | | |||
Sbjct 761261 AGATTCACTGGCAAGGCCTCTGTGAGGAACTCCTGTTCTATCCTGACTGCAT-TGACAAT 761319
Query 93038 -ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGC 93096
|||||| | ||||| | ||||| ||||| | || ||| ||||||| |||||
Sbjct 761320 TATTTCTCTGACTCTCTGCTCCAAAGGTTTATGTACCAGATGTTTGAACATTAAACACGC 761379
Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATA-TCAACTCATTGCTGAATGTTAAACCTG 93155
||| || ||| | || || |||| || || | | || ||| ||||| | ||| |
Sbjct 761380 AAAATCACAATGGAGTCCCTCATCTC-TGCTAATTAGCTTATTCGAAAATGTAAGACCAG 761438
Query 93156 GTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215
| | || |||||||||||| ||||| ||||| || |||||| ||||||| | || || |
Sbjct 761439 GCATCAATCCTCGTTTCTTAAGCCAGAATATGGATGCAAAAGAACCAGAATAGAAGATTC 761498
Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCC 93275
||||||| ||| ||| || | | | |||| || | | || || | ||||
Sbjct 761499 CTTCCACTGCTCTAAAGGCTCCTACATGTTCTCCATAGGTGGCTTCTTTGTCCCCAATCC 761558
Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335
| || |||||||| || || ||||| | |||||| | ||| || |||||||| || |
Sbjct 761559 AGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGAAGA 761618
Query 93336 GGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAG 93395
|| | || | ||| | |||||| || |||||||| | ||| ||||||||||
Sbjct 761619 GGAATTCCCTCTCTTTGGAATCTT-----TAAGTATCGATGAGGAGACTGTACATTTCAG 761673
Query 93396 AATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA 93455
| || | || ||||| ||||| ||||| || |||||||| || ||||| || ||||| |
Sbjct 761674 AGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCTGGCTTCTGTAATCTGAA 761733
Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515
||||||| ||| | ||| || | |||||||| ||||| ||||| || || || |
Sbjct 761734 CTTCTTGGCTAAACCGCTCCACAAAGTTTTCATTCACTATGCCATCACTGGCCGCGAAGA 761793
Query 93516 aaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT--CGGA 93573
|||||| | ||| |||||||| | |||| ||| ||| || ||||| | |||
Sbjct 761794 AAGCCAGCACATGGGATATAAAATATCTCTCCTCAGGTTTCAGGGCCTCCCAGTGCTGGA 761853
Query 93574 TAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTA 93633
| || || ||||| || || || || | ||||||| || || || ||||| || ||
Sbjct 761854 T--GTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAGTGAAGCCTCGGCTTTCTTATA 761911
Query 93634 CATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTT 93693
||| | ||| || || || |||| || ||||| |||||||| || ||||| ||| |
Sbjct 761912 CATCTGCCAAATATCATGGTATTCGATGGGAAAGATGACAAAGTGACGGGGGTTTTCTCT 761971
Query 93694 TAGTAACGGCTC 93705
|| | |||||
Sbjct 761972 CAGGAGTGGCTC 761983
>seq446
Length=2046506
Score = 107 bits (118), Expect = 2e-18
Identities = 86/104 (83%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA 93202
||||| | ||| || | ||||||||||||||||||||| ||||| || |||||| ||||
Sbjct 492581 AATGTAAGACCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCA 492522
Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246
||||| || || |||||||| |||||||| || || | ||||||
Sbjct 492521 GAAAAGAAGATTCCTTCCACTGCTGCAAAGGCTACTACACGTTC 492478
Score = 86.0 bits (94), Expect = 7e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412
|||||| ||||| |||||||| | ||| ||||||||||| || | || |||||
Sbjct 489520 GAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATG 489461
Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462
||||| ||||| || |||||||| | ||||| || ||||| ||||||||
Sbjct 489460 GCAATCTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTG 489411
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556820406709720
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