Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq30 297 2e-75 seq602 284 1e-71 seq418 279 6e-70 seq446 107 2e-18 >seq30 Length=8517879 Score = 297 bits (328), Expect = 2e-75 Identities = 458/648 (71%), Gaps = 7/648 (1%) Strand=Plus/Minus Query 93062 GGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCT 93121 ||||| |||| | || ||| ||||||| |||||||| || ||| | || || ||| Sbjct 2591691 GGTTTATGTAGCAGATGTTTGAACATTAAACACGCAAAATCACAATGGAGTCCCTCATCT 2591632 Query 93122 CGTGATA-TCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCA 93180 | || || | | |||||| ||||| | ||| || | ||||||||||||||||||||| Sbjct 2591631 C-TGCTAATTAGCTCATTCGAAAATGTAAGACCGGGCATCAGTCCTCGTTTCTTGAGCCA 2591573 Query 93181 AAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAAT 93240 ||||| || |||||| ||||||||| || || ||||| || |||||||| || || | Sbjct 2591572 GAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAGGCTACTAC 2591513 Query 93241 ACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTT 93300 || ||| || | || || | ||||| || |||||||| || || || Sbjct 2591512 ACATTCTCCATGGGTGGCTTCTTTGTCCCCAATCCAACACAAGGCCCAATCTGCCTTCTT 2591453 Query 93301 CTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCG 93360 ||| | |||||| | ||| || |||||||| || ||| | || | ||| | |||||| Sbjct 2591452 CTTTACACAAGGCATTGTCTCAATAGCGTTGAAGAGGAATTCCCTCTCTTTGGAATCTTT 2591393 Query 93361 TATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTG 93420 | ||| |||||||| | ||| ||||||||||| || | || ||||| ||||| || Sbjct 2591392 AACGTAAGTATCGATGAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTG 2591333 Query 93421 GAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAG 93480 ||| || |||||||| | ||||| || ||||| |||||||| ||| | ||| || | Sbjct 2591332 GAAGCCATAGAAACAGCAGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAA 2591273 Query 93481 ATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATG 93540 |||||| | ||||| ||||| ||||| || ||||||| | ||| |||||||| Sbjct 2591272 GTTTTCACTCACTATGCCATCACTGGCTGCGAAGAAAGCCAGGACATGGGATATAAAATA 2591213 Query 93541 TTTCTCATCATCTTT-AAGCTTATCCCAAT--CGGATAGATCTTTTGAAAGATCGACTTC 93597 | |||| ||| ||| | | ||||| | |||| || | ||||| || || || Sbjct 2591212 TCTCTCCTCAGGTTTCAGGGGCCTCCCAGTGCTGGAT--GTCCCTGGAAAGGTCCACCTC 2591155 Query 93598 TTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTG 93657 || | |||||||| || || || || || || ||||| | ||| || || || |||| Sbjct 2591154 CTCAGCTGTCCAAAATGAGGCCTCGGCCTTCTTATACATCTGCCAGATATCATGGTATTC 2591095 Query 93658 AATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 || ||||| |||||||| ||| ||||| ||| |||| | ||||| Sbjct 2591094 GATGGGAAAGATGACAAAGCGACGGGGGTTTTCTCTTAGGAGTGGCTC 2591047 >seq602 Length=1640730 Score = 284 bits (314), Expect = 1e-71 Identities = 439/621 (71%), Gaps = 7/621 (1%) Strand=Plus/Plus Query 93062 GGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCT 93121 ||||| |||| | || ||| ||||||| |||||||| || ||| | || || ||| Sbjct 122423 GGTTTATGTAGCAGATGTTTGAACATTAA-CACGCAAAATCACAATGGAGTCCCTCATCT 122481 Query 93122 CGTGATATCAACT-CATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCA 93180 | || || | | |||| ||||| | ||| || | || |||||||||||||||||| Sbjct 122482 C-TGCTAATTAGTGCATTCGAAAATGTAAGACCAGGCATCAATCCTCGTTTCTTGAGCCA 122540 Query 93181 AAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAAT 93240 ||||| || |||||| || |||||| || || |||||||| |||||||| || || | Sbjct 122541 GAATATGGATGCAAAAGAACTAGAAAAGAAGATTCCTTCCACTGCTGCAAAGGCTACTAC 122600 Query 93241 ACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTT 93300 || ||| || | | || || | ||||| | || |||||||| || || || Sbjct 122601 ACATTCTCCATAGGTGGCTTCTTTGTCCCCAATCCAATGCAAGGCCCAATCTGCCTTCTT 122660 Query 93301 CTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCG 93360 ||| | |||||| | ||| || |||||||| || ||| | || | ||| | |||| | Sbjct 122661 CTTTACACAAGGCATTGTCTCAATAGCGTTGAAGAGGAATTCCCTCTCTTTGGAATGTTT 122720 Query 93361 TATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTG 93420 ||||| |||||||| | ||| ||||||||||| || | || ||||| ||||| || Sbjct 122721 AATGTAAGTATCGATGAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTG 122780 Query 93421 GAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAG 93480 ||| || |||||||| | ||||| || ||||| |||||||| ||| | || || | Sbjct 122781 GAAGCCATAGAAACAGCAGGCTTCTGTAATCTGAACTTCTTGGCTAAACCGCTTCACCAA 122840 Query 93481 ATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATG 93540 |||||||| ||||| ||||| || || |||||||| | | ||| |||||||| Sbjct 122841 GTTTTCATTCACTATTCCATCACTGGCCGCGAAAAAAGCAAGCACATGGGATATAAAATA 122900 Query 93541 TTTCTCATCATCTTTAAGCTTATCCCAAT--CGGATAGATCTTTTGAAAGATCGACTTCT 93598 | |||| ||| ||| || ||||| | |||| || || ||||| || || || Sbjct 122901 TCTCTCCTCAGGTTTCAGGGCCTCCCAGTGCTGGAT--GTCCTTGGAAAGGTCCACCTCC 122958 Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGA 93658 || | |||||||| || || || || || || ||||| | ||| || || || |||| Sbjct 122959 TCAGCTGTCCAAAATGAGGCCTCGGCCTTCTTATACATCTGCCAGATATCATGGTATTTG 123018 Query 93659 ATTGGAAATATGACAAAACGA 93679 || ||||| |||||||| ||| Sbjct 123019 ATGGGAAAGATGACAAAGCGA 123039 >seq418 Length=2079112 Score = 279 bits (308), Expect = 6e-70 Identities = 542/792 (68%), Gaps = 14/792 (2%) Strand=Plus/Plus Query 92919 ATAA-TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 |||| ||| || || |||||||| |||||||| ||| ||| || ||||| || | Sbjct 761201 ATAAGTCTGTCCGCCACAAATTCAATGTACTGCTTCATTAAAGTGCAGTTCATCCCGATG 761260 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 ||| || || | || || || | ||| || | || || || || | | ||| Sbjct 761261 AGATTCACTGGCAAGGCCTCTGTGAGGAACTCCTGTTCTATCCTGACTGCAT-TGACAAT 761319 Query 93038 -ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGC 93096 |||||| | ||||| | ||||| ||||| | || ||| ||||||| ||||| Sbjct 761320 TATTTCTCTGACTCTCTGCTCCAAAGGTTTATGTACCAGATGTTTGAACATTAAACACGC 761379 Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATA-TCAACTCATTGCTGAATGTTAAACCTG 93155 ||| || ||| | || || |||| || || | | || ||| ||||| | ||| | Sbjct 761380 AAAATCACAATGGAGTCCCTCATCTC-TGCTAATTAGCTTATTCGAAAATGTAAGACCAG 761438 Query 93156 GTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215 | | || |||||||||||| ||||| ||||| || |||||| ||||||| | || || | Sbjct 761439 GCATCAATCCTCGTTTCTTAAGCCAGAATATGGATGCAAAAGAACCAGAATAGAAGATTC 761498 Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCC 93275 ||||||| ||| ||| || | | | |||| || | | || || | |||| Sbjct 761499 CTTCCACTGCTCTAAAGGCTCCTACATGTTCTCCATAGGTGGCTTCTTTGTCCCCAATCC 761558 Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335 | || |||||||| || || ||||| | |||||| | ||| || |||||||| || | Sbjct 761559 AGCGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTCTCAATAGCGTTGAAGA 761618 Query 93336 GGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAG 93395 || | || | ||| | |||||| || |||||||| | ||| |||||||||| Sbjct 761619 GGAATTCCCTCTCTTTGGAATCTT-----TAAGTATCGATGAGGAGACTGTACATTTCAG 761673 Query 93396 AATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA 93455 | || | || ||||| ||||| ||||| || |||||||| || ||||| || ||||| | Sbjct 761674 AGTGTATGTTTTCCATGGCAATCTGGAAGCCATAGAAACAGCTGGCTTCTGTAATCTGAA 761733 Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515 ||||||| ||| | ||| || | |||||||| ||||| ||||| || || || | Sbjct 761734 CTTCTTGGCTAAACCGCTCCACAAAGTTTTCATTCACTATGCCATCACTGGCCGCGAAGA 761793 Query 93516 aaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT--CGGA 93573 |||||| | ||| |||||||| | |||| ||| ||| || ||||| | ||| Sbjct 761794 AAGCCAGCACATGGGATATAAAATATCTCTCCTCAGGTTTCAGGGCCTCCCAGTGCTGGA 761853 Query 93574 TAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTA 93633 | || || ||||| || || || || | ||||||| || || || ||||| || || Sbjct 761854 T--GTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAGTGAAGCCTCGGCTTTCTTATA 761911 Query 93634 CATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTT 93693 ||| | ||| || || || |||| || ||||| |||||||| || ||||| ||| | Sbjct 761912 CATCTGCCAAATATCATGGTATTCGATGGGAAAGATGACAAAGTGACGGGGGTTTTCTCT 761971 Query 93694 TAGTAACGGCTC 93705 || | ||||| Sbjct 761972 CAGGAGTGGCTC 761983 >seq446 Length=2046506 Score = 107 bits (118), Expect = 2e-18 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA 93202 ||||| | ||| || | ||||||||||||||||||||| ||||| || |||||| |||| Sbjct 492581 AATGTAAGACCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCA 492522 Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||||| || || |||||||| |||||||| || || | |||||| Sbjct 492521 GAAAAGAAGATTCCTTCCACTGCTGCAAAGGCTACTACACGTTC 492478 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 |||||| ||||| |||||||| | ||| ||||||||||| || | || ||||| Sbjct 489520 GAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAGTGTATGTTTTCCATG 489461 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 ||||| ||||| || |||||||| | ||||| || ||||| |||||||| Sbjct 489460 GCAATCTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTG 489411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556820406709720