Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq24 140 6e-28 seq41 129 1e-24 seq608 125 1e-23 seq412 125 1e-23 seq39 114 2e-20 seq98 98.7 2e-15 seq646 93.3 8e-14 seq802 87.8 3e-12 seq154 87.8 3e-12 seq556 84.2 4e-11 >seq24 Length=8999101 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || | ||| || | || || |||||||| ||||| ||||| || || || Sbjct 2890500 CCACCACGCAGTCTCAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCCGAC 2890559 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || ||||||||| | |||||| || || || || || | ||| ||||| || ||| Sbjct 2890560 AGAGTATGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGGA 2890619 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||| || || || ||||| || || || ||| || || |||| | || || Sbjct 2890620 ATGCCTTCTTTATCCTGGATCTTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGACC 2890679 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || ||||||||||| ||||| |||||||| Sbjct 2890680 TCGAGCGTGATGGTCTTCCCAGTGAGGGTCTTCACGAAAATCTGCAT 2890726 >seq41 Length=6870668 Score = 129 bits (142), Expect = 1e-24 Identities = 160/214 (75%), Gaps = 5/214 (2%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || |||||| ||| |||| || || || || || | | ||||| Sbjct 2879621 ACCAGGTGCAGGGTTAACTCTTCCTGGCTGTTGTAGTCAGAAAGAGTGCAGCTGTCTTCC 2879680 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || ||||| || || |||||||| | ||||||||||| ||| | Sbjct 2879681 AGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGGG--ATGCCTTCCTTATCTGGG 2879738 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTT 68431 |||| ||||| || ||||||||| || ||| | || ||||||| |||||||||||| Sbjct 2879739 -TCTTGGCCTTCACATTCTCGATGGTATC-GCTAGGTTTCACTTCCAGGGTGATGGTTTT 2879796 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || | |||||||| ||||| || |||||| || Sbjct 2879797 GCCATTCAGGGTCTTCACGAAGATTTGCATTTTG 2879830 >seq608 Length=1396534 Score = 125 bits (138), Expect = 1e-23 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||| | || |||| ||| || || ||| ||| |||||||| || || || || || | Sbjct 1124043 AGGTGGAAGACCAGGTGCAGGGTCAACTTTTTCTGGATGTTGTAGTCAGAAAGAGTGCGG 1123984 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| |||||||| || || || ||||| || || || || | ||||||||||| Sbjct 1123983 CCATCTTCCAACTGCTTTCCAGCAAAGATGAGCCTCTGCTGATCAGAGAGAATGCCTTCC 1123924 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA-TTCTACTTCCAAGGT 68422 || || || ||||| ||||| || ||| |||| || |||| ||| | ||||| ||| Sbjct 1123923 TTATCCTGGATCTTGGCCTTCACATTCTCTATGGAATCA-CTGAGTTCCATTTCCAGGGT 1123865 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATAT 68455 ||||||||| | || ||| |||| || || || Sbjct 1123864 GATGGTTTTGTCAGTCAGGATCTTCACAAAGAT 1123832 >seq412 Length=2039319 Score = 125 bits (138), Expect = 1e-23 Identities = 160/219 (73%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 |||| || |||| || || |||||||| || ||||| || || || || | || | Sbjct 1106571 AGGCACAGGACCAGGTACAGGGTGGACTCCTTCTGGATTTTGTAGTCAGACACAGTGCAT 1106630 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || ||||| || || ||||| ||| Sbjct 1106631 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGTATGCCCTCC 1106690 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 | ||| || |||||||||||||| |||||||||||| | || || || | |||| Sbjct 1106691 T-GTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTG 1106749 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| || || | |||||||| | ||| ||||||| Sbjct 1106750 ATGGTCTTACCAATCAGGGTCTTCATGAACTGCTGCATT 1106788 >seq39 Length=7040410 Score = 114 bits (126), Expect = 2e-20 Identities = 112/142 (79%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 ||||| || || || || || ||||| || || ||||| |||||||| || ||||| ||| Sbjct 3825949 CCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCC 3825890 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || ||| |||||||||||| |||| || || || | ||||||||||| || || || Sbjct 3825889 TTCACGTTCTCGATGGTGTC-GCTGGGCTCCACCTCGAGAGTGATGGTTTTACCGGTCAG 3825831 Query 68441 GGTCTTGACGAATATCTGCATT 68462 |||||| ||||| ||||||||| Sbjct 3825830 GGTCTTCACGAAGATCTGCATT 3825809 >seq98 Length=4884892 Score = 98.7 bits (108), Expect = 2e-15 Identities = 94/118 (80%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GA 68407 || || ||||| ||||| || || ||||| ||||| || |||||||||||| ||| | Sbjct 1108507 GGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTC-GCTGGG 1108449 Query 68408 TTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || ||||||| ||||||||| || || || |||||||| ||||| ||||||||| || Sbjct 1108448 CTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 1108391 >seq646 Length=1375836 Score = 93.3 bits (102), Expect = 8e-14 Identities = 85/105 (81%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTC 68416 || |||||||| || ||||| |||||||| |||||||||||| ||| | || || || Sbjct 361913 CCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC-GCTGGGCTCGACCTC 361971 Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| || ||||| |||||||| ||||| |||||||| Sbjct 361972 GAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 362016 >seq802 Length=919857 Score = 87.8 bits (96), Expect = 3e-12 Identities = 155/224 (69%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 68242 GAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCC 68301 |||| | ||| || | || || |||||||| ||||| ||||| || | || || || Sbjct 2892 GAAGTCTCAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTTTAGTGTGACAGAGTAG 2833 Query 68302 TCCCATCTTCTAACTGCTTCCCGGCGAATA-TGAGTCTTTGTTGGTCGGGTGGA---ATG 68357 ||| |||| | ||| | || || || | | |||||||| |||| || ||| ||| Sbjct 2832 ACCCGTCTTTCAGCTGTATGCCAGCAAAAAATCAGTCTTTGCTGGTTAGGAGGAGGAATG 2773 Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 |||| || || | ||||| || || || ||| | || |||| | ||| || || Sbjct 2772 TCTTCTTTATCCTAGATCTTGGCTTTCACATTCTCTGTAGTATCTGAGGGTTCGACCTCT 2713 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||| || || || ||||||||||| | ||| |||||||| Sbjct 2712 AGTGTGATTGTCTTCCCAGTGAGGGTCTTCATGAAAATCTGCAT 2669 >seq154 Length=4102096 Score = 87.8 bits (96), Expect = 3e-12 Identities = 143/207 (69%), Gaps = 17/207 (8%) Strand=Plus/Plus Query 68268 GACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCG 68327 |||||||| |||||||| || | || || ||| ||| | |||||| || | Sbjct 1216749 GACTCTTTCTGGATGTTGTAGTAAGAAAGAGTCTTCC--------AGCTGCTTGCCCTCA 1216800 Query 68328 AATATGAGTCTTTGTTGGTCG-------GGTGG--AATGCCTTCCTTGTCTTGAATCTTT 68378 || ||||| || || || | | ||||| |||||||||||| | || ||||| Sbjct 1216801 AAGATGAGCCTCTGCTGCTGGTGGTGGTGGTGGGGAATGCCTTCCTTATTCTGGATCTTG 1216860 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 ||||| | ||||||||| || | || ||||||| ||||||||| || || || Sbjct 1216861 GCCTTCATTTTCTCGATGGTATCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTC 1216920 Query 68439 AGGGTCTTGACGAATATCTGCATTATG 68465 | |||||| | ||| ||||||||| || Sbjct 1216921 AAGGTCTTCATGAAGATCTGCATTTTG 1216947 >seq556 Length=1594741 Score = 84.2 bits (92), Expect = 4e-11 Identities = 110/152 (72%), Gaps = 4/152 (3%) Strand=Plus/Plus Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG 68324 |||||||| ||||| || || || || || | | ||||||||||| || || | Sbjct 329505 GTGGACTCCTTTTGAATTTTGTAGTCAAAG----TACGCCCATCTTCTAGTTGTTTGCTA 329560 Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384 || || || |||||||| || || || ||||| ||||| || || || ||||| || || Sbjct 329561 GCAAAAATTAGTCTTTGCTGATCAGGAGGAATACCTTCTTTATCCTGGATCTTGGCTTTC 329620 Query 68385 ACGGCCTCGATGGTGTCTGCTGATTCTACTTC 68416 ||| || ||||| |||| |||||| || || Sbjct 329621 ACGTTCTTTATGGTATCTGATGATTCAACCTC 329652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921555547815160