Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq24 140 6e-28
seq41 129 1e-24
seq608 125 1e-23
seq412 125 1e-23
seq39 114 2e-20
seq98 98.7 2e-15
seq646 93.3 8e-14
seq802 87.8 3e-12
seq154 87.8 3e-12
seq556 84.2 4e-11
>seq24
Length=8999101
Score = 140 bits (154), Expect = 6e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || | ||| || | || || |||||||| ||||| ||||| || || ||
Sbjct 2890500 CCACCACGCAGTCTCAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCCGAC 2890559
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || ||||||||| | |||||| || || || || || | ||| ||||| || |||
Sbjct 2890560 AGAGTATGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGGA 2890619
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|||||||| || || || ||||| || || || ||| || || |||| | || ||
Sbjct 2890620 ATGCCTTCTTTATCCTGGATCTTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGACC 2890679
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||||| || || ||||||||||| ||||| ||||||||
Sbjct 2890680 TCGAGCGTGATGGTCTTCCCAGTGAGGGTCTTCACGAAAATCTGCAT 2890726
>seq41
Length=6870668
Score = 129 bits (142), Expect = 1e-24
Identities = 160/214 (75%), Gaps = 5/214 (2%)
Strand=Plus/Plus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
|||| ||| || || |||||| ||| |||| || || || || || | | |||||
Sbjct 2879621 ACCAGGTGCAGGGTTAACTCTTCCTGGCTGTTGTAGTCAGAAAGAGTGCAGCTGTCTTCC 2879680
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
| |||||| || || || ||||| || || |||||||| | ||||||||||| ||| |
Sbjct 2879681 AGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGGG--ATGCCTTCCTTATCTGGG 2879738
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTT 68431
|||| ||||| || ||||||||| || ||| | || ||||||| ||||||||||||
Sbjct 2879739 -TCTTGGCCTTCACATTCTCGATGGTATC-GCTAGGTTTCACTTCCAGGGTGATGGTTTT 2879796
Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465
|| | |||||||| ||||| || |||||| ||
Sbjct 2879797 GCCATTCAGGGTCTTCACGAAGATTTGCATTTTG 2879830
>seq608
Length=1396534
Score = 125 bits (138), Expect = 1e-23
Identities = 157/213 (74%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
||| | || |||| ||| || || ||| ||| |||||||| || || || || || |
Sbjct 1124043 AGGTGGAAGACCAGGTGCAGGGTCAACTTTTTCTGGATGTTGTAGTCAGAAAGAGTGCGG 1123984
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||| |||||||| || || || ||||| || || || || | |||||||||||
Sbjct 1123983 CCATCTTCCAACTGCTTTCCAGCAAAGATGAGCCTCTGCTGATCAGAGAGAATGCCTTCC 1123924
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA-TTCTACTTCCAAGGT 68422
|| || || ||||| ||||| || ||| |||| || |||| ||| | ||||| |||
Sbjct 1123923 TTATCCTGGATCTTGGCCTTCACATTCTCTATGGAATCA-CTGAGTTCCATTTCCAGGGT 1123865
Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATAT 68455
||||||||| | || ||| |||| || || ||
Sbjct 1123864 GATGGTTTTGTCAGTCAGGATCTTCACAAAGAT 1123832
>seq412
Length=2039319
Score = 125 bits (138), Expect = 1e-23
Identities = 160/219 (73%), Gaps = 1/219 (0%)
Strand=Plus/Plus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
|||| || |||| || || |||||||| || ||||| || || || || | || |
Sbjct 1106571 AGGCACAGGACCAGGTACAGGGTGGACTCCTTCTGGATTTTGTAGTCAGACACAGTGCAT 1106630
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
|||||||| | |||||| || || || || || || || ||||| || || ||||| |||
Sbjct 1106631 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGTATGCCCTCC 1106690
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423
| ||| || |||||||||||||| |||||||||||| | || || || | ||||
Sbjct 1106691 T-GTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTG 1106749
Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
||||| || || | |||||||| | ||| |||||||
Sbjct 1106750 ATGGTCTTACCAATCAGGGTCTTCATGAACTGCTGCATT 1106788
>seq39
Length=7040410
Score = 114 bits (126), Expect = 2e-20
Identities = 112/142 (79%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
||||| || || || || || ||||| || || ||||| |||||||| || ||||| |||
Sbjct 3825949 CCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCC 3825890
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440
|| ||| |||||||||||| |||| || || || | ||||||||||| || || ||
Sbjct 3825889 TTCACGTTCTCGATGGTGTC-GCTGGGCTCCACCTCGAGAGTGATGGTTTTACCGGTCAG 3825831
Query 68441 GGTCTTGACGAATATCTGCATT 68462
|||||| ||||| |||||||||
Sbjct 3825830 GGTCTTCACGAAGATCTGCATT 3825809
>seq98
Length=4884892
Score = 98.7 bits (108), Expect = 2e-15
Identities = 94/118 (80%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GA 68407
|| || ||||| ||||| || || ||||| ||||| || |||||||||||| ||| |
Sbjct 1108507 GGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTC-GCTGGG 1108449
Query 68408 TTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465
|| ||||||| ||||||||| || || || |||||||| ||||| ||||||||| ||
Sbjct 1108448 CTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 1108391
>seq646
Length=1375836
Score = 93.3 bits (102), Expect = 8e-14
Identities = 85/105 (81%), Gaps = 2/105 (2%)
Strand=Plus/Plus
Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTC 68416
|| |||||||| || ||||| |||||||| |||||||||||| ||| | || || ||
Sbjct 361913 CCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC-GCTGGGCTCGACCTC 361971
Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
| ||||||||| || ||||| |||||||| ||||| ||||||||
Sbjct 361972 GAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 362016
>seq802
Length=919857
Score = 87.8 bits (96), Expect = 3e-12
Identities = 155/224 (69%), Gaps = 4/224 (2%)
Strand=Plus/Minus
Query 68242 GAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCC 68301
|||| | ||| || | || || |||||||| ||||| ||||| || | || || ||
Sbjct 2892 GAAGTCTCAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTTTAGTGTGACAGAGTAG 2833
Query 68302 TCCCATCTTCTAACTGCTTCCCGGCGAATA-TGAGTCTTTGTTGGTCGGGTGGA---ATG 68357
||| |||| | ||| | || || || | | |||||||| |||| || ||| |||
Sbjct 2832 ACCCGTCTTTCAGCTGTATGCCAGCAAAAAATCAGTCTTTGCTGGTTAGGAGGAGGAATG 2773
Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417
|||| || || | ||||| || || || ||| | || |||| | ||| || ||
Sbjct 2772 TCTTCTTTATCCTAGATCTTGGCTTTCACATTCTCTGTAGTATCTGAGGGTTCGACCTCT 2713
Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
| ||||| || || || ||||||||||| | ||| ||||||||
Sbjct 2712 AGTGTGATTGTCTTCCCAGTGAGGGTCTTCATGAAAATCTGCAT 2669
>seq154
Length=4102096
Score = 87.8 bits (96), Expect = 3e-12
Identities = 143/207 (69%), Gaps = 17/207 (8%)
Strand=Plus/Plus
Query 68268 GACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCG 68327
|||||||| |||||||| || | || || ||| ||| | |||||| || |
Sbjct 1216749 GACTCTTTCTGGATGTTGTAGTAAGAAAGAGTCTTCC--------AGCTGCTTGCCCTCA 1216800
Query 68328 AATATGAGTCTTTGTTGGTCG-------GGTGG--AATGCCTTCCTTGTCTTGAATCTTT 68378
|| ||||| || || || | | ||||| |||||||||||| | || |||||
Sbjct 1216801 AAGATGAGCCTCTGCTGCTGGTGGTGGTGGTGGGGAATGCCTTCCTTATTCTGGATCTTG 1216860
Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438
||||| | ||||||||| || | || ||||||| ||||||||| || || ||
Sbjct 1216861 GCCTTCATTTTCTCGATGGTATCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTC 1216920
Query 68439 AGGGTCTTGACGAATATCTGCATTATG 68465
| |||||| | ||| ||||||||| ||
Sbjct 1216921 AAGGTCTTCATGAAGATCTGCATTTTG 1216947
>seq556
Length=1594741
Score = 84.2 bits (92), Expect = 4e-11
Identities = 110/152 (72%), Gaps = 4/152 (3%)
Strand=Plus/Plus
Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG 68324
|||||||| ||||| || || || || || | | ||||||||||| || || |
Sbjct 329505 GTGGACTCCTTTTGAATTTTGTAGTCAAAG----TACGCCCATCTTCTAGTTGTTTGCTA 329560
Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384
|| || || |||||||| || || || ||||| ||||| || || || ||||| || ||
Sbjct 329561 GCAAAAATTAGTCTTTGCTGATCAGGAGGAATACCTTCTTTATCCTGGATCTTGGCTTTC 329620
Query 68385 ACGGCCTCGATGGTGTCTGCTGATTCTACTTC 68416
||| || ||||| |||| |||||| || ||
Sbjct 329621 ACGTTCTTTATGGTATCTGATGATTCAACCTC 329652
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921555547815160
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