Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq30 174 3e-38
seq602 161 2e-34
>seq30
Length=8517879
Score = 174 bits (192), Expect = 3e-38
Identities = 573/876 (65%), Gaps = 30/876 (3%)
Strand=Plus/Plus
Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344
||||| |||| || |||||| ||||| |||||||| || ||| ||||| ||
Sbjct 2591092 ATCGAATACCATGATATCTGGCAGATGTATAAGAAGGCCGAGGCCTCATTTTGGACAGCT 2591151
Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGC--TGGGAGTCAC-TGT---CTGAGAAC 42398
|||||| | ||||| ||| ||||| || || |||||| | | || ||||| |
Sbjct 2591152 GAGGAGGTGGACCTTTCCAGGGACAT--CCAGCACTGGGAGGCCCCTGAAACCTGAGGA- 2591208
Query 42399 GAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAAT 42458
|| | |||| || | | ||||| |||||||| ||| ||| |||||||| | |
Sbjct 2591209 GAGATATTTTATATCCCATG--TCCTGGCTTTCTTCGCAGCCAGTGATGGCATAGTGAGT 2591266
Query 42459 GAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCT 42516
|| ||| ||| |||| | |||| || ||| ||| || || |||| ||||
Sbjct 2591267 GAAAACTTGGTGGAGCGGTTTAGCCAAGAAGTTCAGATTACA--GAAGCCTGCTGTTTCT 2591324
Query 42517 ACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAAC- 42575
| ||||||||||| ||||| || ||| | |||||||| ||||| | || |||| |
Sbjct 2591325 ATGGCTTCCAGATTGCCATGGAAAACATACACTCTGAAATGTAC---AGTCTCCTCATCG 2591381
Query 42576 --ACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGC 42633
|| ||| | ||| || ||| | | || ||||| || || ||||| ||||
Sbjct 2591382 ATACTTACGTTAAAGATTCCAAAGAGAGGGAATTCCTCTTCAACGCTATTGAGACAATGC 2591441
Query 42634 CCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGT 42693
| || | ||||||||||| || ||||| | ||||| | | || || ||
Sbjct 2591442 CTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGTGTTGGATTGGGGACAAAGAAGCCACCC 2591501
Query 42694 TCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCG 42753
|| || | | ||||||||| | || || || || |||||||| || || | || |
Sbjct 2591502 ATGGAGAATGTGTAGTAGCCTTTGCAGCAGTTGAAGGAATCTTCTTTTCTGGTTCTTTTG 2591561
Query 42754 CCTCCATCTTCTGGCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAA 42812
| ||||| |||||||||||| | ||| | ||||||||| || || || ||||| ||
Sbjct 2591562 CATCCATATTCTGGCTCAAGAAACGAGGACT-GATGCCCGGTCTTACATTTTCGAATGAG 2591620
Query 42813 CTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCAC 42872
|| || ||||| || ||||| || ||| | || ||||| || | ||||| | ||
Sbjct 2591621 CTAATTAGCAGAGATGAGGGACTCCATTGTGATTTTGCGTGTTTAATGTTC---AAACAT 2591677
Query 42873 CTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGG---AGGCCGTGGAG 42929
|| || || || ||| || || | ||| | | || || | | | || || |
Sbjct 2591678 CTGCTACATAAACCTTCGGAGCAGAGAGTCAGAGAAAT-ATAATTGTCAATGCTGTCAGG 2591736
Query 42930 ATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGAC 42989
|| || ||||||||||||| || | |||| ||| || |||| |||||| |
Sbjct 2591737 ATAGAACAGGAGTTCCTCACAAAGGCCTTGCCAGTGAATCTCATCGGGATGAACTGCACT 2591796
Query 42990 CTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC 43049
| ||| ||||||| | | ||| |||||| ||| | || |||| |||||
Sbjct 2591797 TTAATGAAGCAGTACATTGAATTCGTGGCCGACAGACTCATACTGGAGCTGGGCTTCAGC 2591856
Query 43050 CGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAG 43109
| | || | || || ||||||||||||||||| || ||||| |||||
Sbjct 2591857 AAGGTTTTCAGAGTAGAGAATCCATTTGACTTTATGGAGAACATTTCATTGGAAGGCAAA 2591916
Query 43110 ACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145
|| ||||| || ||||| | | | ||| || |||
Sbjct 2591917 ACTAACTTCTTTAAGAAGAGACTAGGCGAGTATCAG 2591952
>seq602
Length=1640730
Score = 161 bits (178), Expect = 2e-34
Identities = 384/572 (67%), Gaps = 20/572 (3%)
Strand=Plus/Minus
Query 42292 ACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGA 42351
|||| || |||||| ||||| |||||||| || ||| ||||| || ||||||
Sbjct 123013 ACCATGATATCTGGCAGATGTATAAGAAGGCCGAGGCCTCATTTTGGACAGCTGAGGAGG 122954
Query 42352 TTGACCTGGCCAAGGACACGGCCGGC--TGGGAGTCACTGT---CTGAGAACGAAAAGTT 42406
| ||||| ||||||||| || || |||||| | ||| ||||| | || | ||
Sbjct 122953 TGGACCTTTCCAAGGACAT--CCAGCACTGGGAGGCCCTGAAACCTGAGGA-GAGATATT 122897
Query 42407 TTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCT 42466
|| || | | || || || ||||| ||| ||| || ||||| ||||| ||| |
Sbjct 122896 TTATATCCCATG--TGCTTGCTTTTTTCGCGGCCAGTGATGGAATAGTGAATGAAAACTT 122839
Query 42467 GGCCACCAGGTTCATGAAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTACGGCTTC 42524
|| | |||| | |||| || ||| ||| || || |||| ||||| ||||||
Sbjct 122838 GGTGAAGCGGTTTAGCCAAGAAGTTCAGATTACA--GAAGCCTGCTGTTTCTATGGCTTC 122781
Query 42525 CAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAAC---ACGTAC 42581
||||| ||||| || ||| | |||||||| ||||| | || |||| | || |||
Sbjct 122780 CAGATTGCCATGGAAAACATACACTCTGAAATGTAC---AGTCTCCTCATCGATACTTAC 122724
Query 42582 ATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATC 42641
|| || || ||| | | || ||||| || || ||||| ||||| || |
Sbjct 122723 ATTAAACATTCCAAAGAGAGGGAATTCCTCTTCAACGCTATTGAGACAATGCCTTGTGTA 122664
Query 42642 AAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAG 42701
||||||||||| || ||||| | | ||||| | | || || || | || ||
Sbjct 122663 AAGAAGAAGGCAGATTGGGCCTTGCATTGGATTGGGGACAAAGAAGCCACCTATGGAGAA 122604
Query 42702 AGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATC 42761
| | ||||||||| | || || || || |||||||| || | | || || |||||
Sbjct 122603 TGTGTAGTAGCCTTTGCAGCAGTGGAAGGAATCTTCTTTTCTAGTTCTTTTGCATCCATA 122544
Query 42762 TTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGC 42821
|||||||||||| | | | |||||| || || || || ||||| | ||| || |||
Sbjct 122543 TTCTGGCTCAAGAAACGAGGATTGATGCCTGGTCTTACATTTTCGAATGCACTAATTAGC 122484
Query 42822 AGGGACGAGGGGCTGCATAGGGACTTTGCCTG 42853
|| || ||||| || ||| | || ||||| ||
Sbjct 122483 AGAGATGAGGGACTCCATTGTGATTTTGCGTG 122452
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944270699995280
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