Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq30 174 3e-38 seq602 161 2e-34 >seq30 Length=8517879 Score = 174 bits (192), Expect = 3e-38 Identities = 573/876 (65%), Gaps = 30/876 (3%) Strand=Plus/Plus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||||| |||| || |||||| ||||| |||||||| || ||| ||||| || Sbjct 2591092 ATCGAATACCATGATATCTGGCAGATGTATAAGAAGGCCGAGGCCTCATTTTGGACAGCT 2591151 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGC--TGGGAGTCAC-TGT---CTGAGAAC 42398 |||||| | ||||| ||| ||||| || || |||||| | | || ||||| | Sbjct 2591152 GAGGAGGTGGACCTTTCCAGGGACAT--CCAGCACTGGGAGGCCCCTGAAACCTGAGGA- 2591208 Query 42399 GAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAAT 42458 || | |||| || | | ||||| |||||||| ||| ||| |||||||| | | Sbjct 2591209 GAGATATTTTATATCCCATG--TCCTGGCTTTCTTCGCAGCCAGTGATGGCATAGTGAGT 2591266 Query 42459 GAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCT 42516 || ||| ||| |||| | |||| || ||| ||| || || |||| |||| Sbjct 2591267 GAAAACTTGGTGGAGCGGTTTAGCCAAGAAGTTCAGATTACA--GAAGCCTGCTGTTTCT 2591324 Query 42517 ACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAAC- 42575 | ||||||||||| ||||| || ||| | |||||||| ||||| | || |||| | Sbjct 2591325 ATGGCTTCCAGATTGCCATGGAAAACATACACTCTGAAATGTAC---AGTCTCCTCATCG 2591381 Query 42576 --ACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGC 42633 || ||| | ||| || ||| | | || ||||| || || ||||| |||| Sbjct 2591382 ATACTTACGTTAAAGATTCCAAAGAGAGGGAATTCCTCTTCAACGCTATTGAGACAATGC 2591441 Query 42634 CCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGT 42693 | || | ||||||||||| || ||||| | ||||| | | || || || Sbjct 2591442 CTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGTGTTGGATTGGGGACAAAGAAGCCACCC 2591501 Query 42694 TCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCG 42753 || || | | ||||||||| | || || || || |||||||| || || | || | Sbjct 2591502 ATGGAGAATGTGTAGTAGCCTTTGCAGCAGTTGAAGGAATCTTCTTTTCTGGTTCTTTTG 2591561 Query 42754 CCTCCATCTTCTGGCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAA 42812 | ||||| |||||||||||| | ||| | ||||||||| || || || ||||| || Sbjct 2591562 CATCCATATTCTGGCTCAAGAAACGAGGACT-GATGCCCGGTCTTACATTTTCGAATGAG 2591620 Query 42813 CTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCAC 42872 || || ||||| || ||||| || ||| | || ||||| || | ||||| | || Sbjct 2591621 CTAATTAGCAGAGATGAGGGACTCCATTGTGATTTTGCGTGTTTAATGTTC---AAACAT 2591677 Query 42873 CTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGG---AGGCCGTGGAG 42929 || || || || ||| || || | ||| | | || || | | | || || | Sbjct 2591678 CTGCTACATAAACCTTCGGAGCAGAGAGTCAGAGAAAT-ATAATTGTCAATGCTGTCAGG 2591736 Query 42930 ATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGAC 42989 || || ||||||||||||| || | |||| ||| || |||| |||||| | Sbjct 2591737 ATAGAACAGGAGTTCCTCACAAAGGCCTTGCCAGTGAATCTCATCGGGATGAACTGCACT 2591796 Query 42990 CTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC 43049 | ||| ||||||| | | ||| |||||| ||| | || |||| ||||| Sbjct 2591797 TTAATGAAGCAGTACATTGAATTCGTGGCCGACAGACTCATACTGGAGCTGGGCTTCAGC 2591856 Query 43050 CGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAG 43109 | | || | || || ||||||||||||||||| || ||||| ||||| Sbjct 2591857 AAGGTTTTCAGAGTAGAGAATCCATTTGACTTTATGGAGAACATTTCATTGGAAGGCAAA 2591916 Query 43110 ACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 || ||||| || ||||| | | | ||| || ||| Sbjct 2591917 ACTAACTTCTTTAAGAAGAGACTAGGCGAGTATCAG 2591952 >seq602 Length=1640730 Score = 161 bits (178), Expect = 2e-34 Identities = 384/572 (67%), Gaps = 20/572 (3%) Strand=Plus/Minus Query 42292 ACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGA 42351 |||| || |||||| ||||| |||||||| || ||| ||||| || |||||| Sbjct 123013 ACCATGATATCTGGCAGATGTATAAGAAGGCCGAGGCCTCATTTTGGACAGCTGAGGAGG 122954 Query 42352 TTGACCTGGCCAAGGACACGGCCGGC--TGGGAGTCACTGT---CTGAGAACGAAAAGTT 42406 | ||||| ||||||||| || || |||||| | ||| ||||| | || | || Sbjct 122953 TGGACCTTTCCAAGGACAT--CCAGCACTGGGAGGCCCTGAAACCTGAGGA-GAGATATT 122897 Query 42407 TTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCT 42466 || || | | || || || ||||| ||| ||| || ||||| ||||| ||| | Sbjct 122896 TTATATCCCATG--TGCTTGCTTTTTTCGCGGCCAGTGATGGAATAGTGAATGAAAACTT 122839 Query 42467 GGCCACCAGGTTCATGAAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTACGGCTTC 42524 || | |||| | |||| || ||| ||| || || |||| ||||| |||||| Sbjct 122838 GGTGAAGCGGTTTAGCCAAGAAGTTCAGATTACA--GAAGCCTGCTGTTTCTATGGCTTC 122781 Query 42525 CAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAAC---ACGTAC 42581 ||||| ||||| || ||| | |||||||| ||||| | || |||| | || ||| Sbjct 122780 CAGATTGCCATGGAAAACATACACTCTGAAATGTAC---AGTCTCCTCATCGATACTTAC 122724 Query 42582 ATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATC 42641 || || || ||| | | || ||||| || || ||||| ||||| || | Sbjct 122723 ATTAAACATTCCAAAGAGAGGGAATTCCTCTTCAACGCTATTGAGACAATGCCTTGTGTA 122664 Query 42642 AAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAG 42701 ||||||||||| || ||||| | | ||||| | | || || || | || || Sbjct 122663 AAGAAGAAGGCAGATTGGGCCTTGCATTGGATTGGGGACAAAGAAGCCACCTATGGAGAA 122604 Query 42702 AGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATC 42761 | | ||||||||| | || || || || |||||||| || | | || || ||||| Sbjct 122603 TGTGTAGTAGCCTTTGCAGCAGTGGAAGGAATCTTCTTTTCTAGTTCTTTTGCATCCATA 122544 Query 42762 TTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGC 42821 |||||||||||| | | | |||||| || || || || ||||| | ||| || ||| Sbjct 122543 TTCTGGCTCAAGAAACGAGGATTGATGCCTGGTCTTACATTTTCGAATGCACTAATTAGC 122484 Query 42822 AGGGACGAGGGGCTGCATAGGGACTTTGCCTG 42853 || || ||||| || ||| | || ||||| || Sbjct 122483 AGAGATGAGGGACTCCATTGTGATTTTGCGTG 122452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944270699995280