Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_009334.1 Length=172764 Score E Sequences producing significant alignments: (Bits) Value seq70 159 4e-34 seq195 118 1e-21 >seq70 Length=5737579 Score = 159 bits (176), Expect = 4e-34 Identities = 162/210 (77%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 9952 CAAAGACCATGTAAATTCTTTGGGTGAAAATCTAAAGACCCTACGGCTCCGCCTGCGCAG 10011 ||| || ||||| || || |||| ||||| || |||||||| |||| | ||||| | Sbjct 5258845 CAAGGAGCATGTGAACTCCCTGGGGGAAAAACTGAAGACCCTCAGGCTGAGGCTGCGATG 5258786 Query 10012 GTGCCACAGGTTCCTGCCGTGTGAGAACAAGAGTAAAGCTGTGGAACAGATAAAAAATGC 10071 || || | ||| |||| ||||| || || || || || ||||| || | || |||| Sbjct 5258785 CTGTCATCGATTCTTGCCCTGTGAAAATAAAAGCAAGGCAGTGGAGAAGGTGAAGGATGC 5258726 Query 10072 CTTTAACAAGCTGCAGGAAAAAGGAATTTACAAAGCCATGAGTGAATTTGACATTTTTAT 10131 ||||| ||||| || || |||||| |||||||||||||||||| | ||||||| ||||| Sbjct 5258725 CTTTAGTAAGCTCCAAGAGAAAGGAGTTTACAAAGCCATGAGTG-AGTTGACATCTTTAT 5258667 Query 10132 TAACTACATAGAAGCATACATGACAATTAA 10161 |||||||||||| | ||||||||||| || Sbjct 5258666 CAACTACATAGAAACCTACATGACAATGAA 5258637 >seq195 Length=3676426 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 9861 AGGGCTACCTTGGATGCCAGGCCCTGTCAGAAATGATCCAATTCTACCTGGAGGAAGTCA 9920 |||| ||||| || ||||| || ||||||| |||||||| || ||||||||||| || | Sbjct 364768 AGGGTTACCTGGGCTGCCAAGCGTTGTCAGAGATGATCCAGTTTTACCTGGAGGAGGTGA 364827 Query 9921 TGCCACAGGCTGAAAACCAGGACCCTGAAGCCAAAGACCATGTAAATTCTTTGGGTGAAA 9980 |||||| ||||| ||||| | ||| || ||| || ||||| || ||| |||| |||| Sbjct 364828 TGCCACGAGCTGAGAACCATGGCCCAGACATCAAGGAGCATGTGAACTCTCTGGGGGAAA 364887 Query 9981 ATCTAAAGACCCTACGGCTCCGCCTGCG 10008 | || |||||||| |||| | ||||| Sbjct 364888 AACTGAAGACCCTCAGGCTGAGGCTGCG 364915 Score = 104 bits (114), Expect = 3e-17 Identities = 72/82 (88%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 10080 AGCTGCAGGAAAAAGGAATTTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTACA 10139 |||| || || |||||| ||||||||||||||||||| |||||||| ||||| ||||||| Sbjct 367493 AGCTCCAAGAGAAAGGAGTTTACAAAGCCATGAGTGAGTTTGACATCTTTATCAACTACA 367552 Query 10140 TAGAAGCATACATGACAATTAA 10161 ||||| | ||||||||||| || Sbjct 367553 TAGAAACCTACATGACAATGAA 367574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552676707305120