Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_009334.1
Length=172764
Score E
Sequences producing significant alignments: (Bits) Value
seq70 159 4e-34
seq195 118 1e-21
>seq70
Length=5737579
Score = 159 bits (176), Expect = 4e-34
Identities = 162/210 (77%), Gaps = 1/210 (0%)
Strand=Plus/Minus
Query 9952 CAAAGACCATGTAAATTCTTTGGGTGAAAATCTAAAGACCCTACGGCTCCGCCTGCGCAG 10011
||| || ||||| || || |||| ||||| || |||||||| |||| | ||||| |
Sbjct 5258845 CAAGGAGCATGTGAACTCCCTGGGGGAAAAACTGAAGACCCTCAGGCTGAGGCTGCGATG 5258786
Query 10012 GTGCCACAGGTTCCTGCCGTGTGAGAACAAGAGTAAAGCTGTGGAACAGATAAAAAATGC 10071
|| || | ||| |||| ||||| || || || || || ||||| || | || ||||
Sbjct 5258785 CTGTCATCGATTCTTGCCCTGTGAAAATAAAAGCAAGGCAGTGGAGAAGGTGAAGGATGC 5258726
Query 10072 CTTTAACAAGCTGCAGGAAAAAGGAATTTACAAAGCCATGAGTGAATTTGACATTTTTAT 10131
||||| ||||| || || |||||| |||||||||||||||||| | ||||||| |||||
Sbjct 5258725 CTTTAGTAAGCTCCAAGAGAAAGGAGTTTACAAAGCCATGAGTG-AGTTGACATCTTTAT 5258667
Query 10132 TAACTACATAGAAGCATACATGACAATTAA 10161
|||||||||||| | ||||||||||| ||
Sbjct 5258666 CAACTACATAGAAACCTACATGACAATGAA 5258637
>seq195
Length=3676426
Score = 118 bits (130), Expect = 1e-21
Identities = 115/148 (78%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 9861 AGGGCTACCTTGGATGCCAGGCCCTGTCAGAAATGATCCAATTCTACCTGGAGGAAGTCA 9920
|||| ||||| || ||||| || ||||||| |||||||| || ||||||||||| || |
Sbjct 364768 AGGGTTACCTGGGCTGCCAAGCGTTGTCAGAGATGATCCAGTTTTACCTGGAGGAGGTGA 364827
Query 9921 TGCCACAGGCTGAAAACCAGGACCCTGAAGCCAAAGACCATGTAAATTCTTTGGGTGAAA 9980
|||||| ||||| ||||| | ||| || ||| || ||||| || ||| |||| ||||
Sbjct 364828 TGCCACGAGCTGAGAACCATGGCCCAGACATCAAGGAGCATGTGAACTCTCTGGGGGAAA 364887
Query 9981 ATCTAAAGACCCTACGGCTCCGCCTGCG 10008
| || |||||||| |||| | |||||
Sbjct 364888 AACTGAAGACCCTCAGGCTGAGGCTGCG 364915
Score = 104 bits (114), Expect = 3e-17
Identities = 72/82 (88%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 10080 AGCTGCAGGAAAAAGGAATTTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTACA 10139
|||| || || |||||| ||||||||||||||||||| |||||||| ||||| |||||||
Sbjct 367493 AGCTCCAAGAGAAAGGAGTTTACAAAGCCATGAGTGAGTTTGACATCTTTATCAACTACA 367552
Query 10140 TAGAAGCATACATGACAATTAA 10161
||||| | ||||||||||| ||
Sbjct 367553 TAGAAACCTACATGACAATGAA 367574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 552676707305120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |