Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq24 140 8e-28 seq608 100 7e-16 seq98 98.7 2e-15 seq802 89.7 1e-12 >seq24 Length=8999101 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 2890500 CCACCACGCAGTCTCAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCCGAC 2890559 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || ||||| | || || || || || |||||||| || || | || Sbjct 2890560 AGAGTATGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGGA 2890619 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||||||||||||||| || |||||||| || ||||||| ||| | || || Sbjct 2890620 ATGCCTTCTTTATCCTGGATCTTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGACC 2890679 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||| |||||||| || || ||||| ||||| |||||||| Sbjct 2890680 TCGAGCGTGATGGTCTTCCCAGTGAGGGTCTTCACGAAAATCTGCAT 2890726 >seq608 Length=1396534 Score = 100 bits (110), Expect = 7e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 288285 TTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGAT 288344 ||| ||||| || ||||| | || ||||| || ||||| || || ||||| || ||||| Sbjct 1124014 TTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGAT 1123955 Query 288345 CAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTC 288404 || | ||| ||| | | || ||||| ||||||||||| || || ||||| || || Sbjct 1123954 GAGCCTCTGCTGATCAGAGAGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTC 1123895 Query 288405 TATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 ||| ||||| || ||| | ||| || ||||| || || | ||||| |||| || || Sbjct 1123894 TATGGAATCACTGAGTTCCATTTCCAGGGTGATGGTTTTGTCAGTCAGGATCTTCACAAA 1123835 Query 288465 TAT 288467 || Sbjct 1123834 GAT 1123832 >seq98 Length=4884892 Score = 98.7 bits (108), Expect = 2e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || ||||||||||| || || ||||| || || || | ||||| | || Sbjct 1108504 GGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCGCTGGGCTCC 1108445 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||||| || ||||| ||||| |||||||| ||||| ||||| ||||||||| || Sbjct 1108444 ACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 1108391 >seq802 Length=919857 Score = 89.7 bits (98), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 288248 CACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGA 288307 |||| | ||||| | || ||||||| ||| || ||||| || || |||| | | Sbjct 2898 CACCATGAAGTCTCAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTTTAGTGTGACA 2839 Query 288308 GCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA-TCAGAC---GCTGTTGAGAATCT 288363 | || ||||||| | ||| | || || || | |||| | |||| | || | Sbjct 2838 GAGTAGACCCGTCTTTCAGCTGTATGCCAGCAAAAAATCAGTCTTTGCTGGTTAGGAGGA 2779 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || |||||||||||| ||| || |||||||| || ||| ||| ||| | ||| Sbjct 2778 GGAATGTCTTCTTTATCCTAGATCTTGGCTTTCACATTCTCTGTAGTATCTGAGGGTTCG 2719 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| |||||||| || || ||||| | ||| |||||||| Sbjct 2718 ACCTCTAGTGTGATTGTCTTCCCAGTGAGGGTCTTCATGAAAATCTGCAT 2669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179566691589434