Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq24 140 8e-28
seq608 100 7e-16
seq98 98.7 2e-15
seq802 89.7 1e-12
>seq24
Length=8999101
Score = 140 bits (154), Expect = 8e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || ||||| | || ||||||| ||| || ||||| || || ||||| |
Sbjct 2890500 CCACCACGCAGTCTCAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCCGAC 2890559
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || | || ||||| | || || || || || |||||||| || || | ||
Sbjct 2890560 AGAGTATGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGGA 2890619
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| ||||||||||||||||| || |||||||| || ||||||| ||| | || ||
Sbjct 2890620 ATGCCTTCTTTATCCTGGATCTTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGACC 2890679
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||||||||| |||||||| || || ||||| ||||| ||||||||
Sbjct 2890680 TCGAGCGTGATGGTCTTCCCAGTGAGGGTCTTCACGAAAATCTGCAT 2890726
>seq608
Length=1396534
Score = 100 bits (110), Expect = 7e-16
Identities = 132/183 (72%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 288285 TTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGAT 288344
||| ||||| || ||||| | || ||||| || ||||| || || ||||| || |||||
Sbjct 1124014 TTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGAT 1123955
Query 288345 CAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTC 288404
|| | ||| ||| | | || ||||| ||||||||||| || || ||||| || ||
Sbjct 1123954 GAGCCTCTGCTGATCAGAGAGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTC 1123895
Query 288405 TATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464
||| ||||| || ||| | ||| || ||||| || || | ||||| |||| || ||
Sbjct 1123894 TATGGAATCACTGAGTTCCATTTCCAGGGTGATGGTTTTGTCAGTCAGGATCTTCACAAA 1123835
Query 288465 TAT 288467
||
Sbjct 1123834 GAT 1123832
>seq98
Length=4884892
Score = 98.7 bits (108), Expect = 2e-15
Identities = 90/114 (79%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
||||| || || ||||||||||| || || ||||| || || || | ||||| | ||
Sbjct 1108504 GGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCGCTGGGCTCC 1108445
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477
||||| || ||||| ||||| |||||||| ||||| ||||| ||||||||| ||
Sbjct 1108444 ACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 1108391
>seq802
Length=919857
Score = 89.7 bits (98), Expect = 1e-12
Identities = 159/230 (69%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 288248 CACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGA 288307
|||| | ||||| | || ||||||| ||| || ||||| || || |||| | |
Sbjct 2898 CACCATGAAGTCTCAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTTTAGTGTGACA 2839
Query 288308 GCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA-TCAGAC---GCTGTTGAGAATCT 288363
| || ||||||| | ||| | || || || | |||| | |||| | || |
Sbjct 2838 GAGTAGACCCGTCTTTCAGCTGTATGCCAGCAAAAAATCAGTCTTTGCTGGTTAGGAGGA 2779
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || |||||||||||| ||| || |||||||| || ||| ||| ||| | |||
Sbjct 2778 GGAATGTCTTCTTTATCCTAGATCTTGGCTTTCACATTCTCTGTAGTATCTGAGGGTTCG 2719
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || ||||| |||||||| || || ||||| | ||| ||||||||
Sbjct 2718 ACCTCTAGTGTGATTGTCTTCCCAGTGAGGGTCTTCATGAAAATCTGCAT 2669
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179566691589434
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |