Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq9 96.9 4e-15 seq740 95.1 1e-14 seq1618 93.3 5e-14 seq24 93.3 5e-14 seq41 91.5 2e-13 seq39 91.5 2e-13 seq650 89.7 6e-13 seq197 89.7 6e-13 >seq9 Length=10989404 Score = 96.9 bits (106), Expect = 4e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 6494326 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 6494385 Query 57065 TATACTACCGAGGATTGA 57082 ||||||| |||||| ||| Sbjct 6494386 TATACTAACGAGGACTGA 6494403 >seq740 Length=1116153 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| || | | |||||||||| ||||||||||||||||||||| |||||||||| Sbjct 758831 TTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 758772 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 758771 CTATACTAACGAGGA 758757 >seq1618 Length=105872 Score = 93.3 bits (102), Expect = 5e-14 Identities = 71/83 (86%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 56997 GAAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 |||||||| || ||| || | | ||| |||||| ||||||||||||||||||||| || Sbjct 44507 GAAAAATTATCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 44448 Query 57056 ACTCACCACTATACTACCGAGGA 57078 |||||||||||||||| |||||| Sbjct 44447 ACTCACCACTATACTAACGAGGA 44425 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 89919 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 89860 Query 57067 TACTACCGAGGATTG 57081 ||||| |||||| || Sbjct 89859 TACTAACGAGGACTG 89845 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 70442 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 70383 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 70382 TACTAACGAGGA 70371 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 105265 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 105206 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 105205 TACTAACGAGGA 105194 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 41419 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 41360 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 41359 ATACTAACGAGGA 41347 >seq24 Length=8999101 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055 ||| || | ||| | |||| |||||||||||| ||||| || | |||||| || | || Sbjct 2890514 CAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCCGACAGAGTATGCCCATC 2890573 Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115 || |||||||| ||||| || || || || |||||||| | || | || || || || Sbjct 2890574 TTCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGGAATGCCTTCTTTATC 2890633 Query 42116 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 42175 | ||| || ||| | || | | || || | || || |||| ||||||||| Sbjct 2890634 CTGGATCTTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGACCTCGAGCGTGATGGT 2890693 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || || || || ||||| || || || ||||| || Sbjct 2890694 CTTCCCAGTGAGGGTCTTCACGAAAATCTGCATCTT 2890729 >seq41 Length=6870668 Score = 91.5 bits (100), Expect = 2e-13 Identities = 136/187 (73%), Gaps = 7/187 (4%) Strand=Plus/Plus Query 42030 TTGTAATCAGCCAGAGTCC-GCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTG 42088 ||||| |||| ||||| | ||| ||| || |||||||| ||||| || ||||| | ||| Sbjct 2879651 TTGTAGTCAGAAAGAGTGCAGCT-GTCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTG 2879709 Query 42089 CTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGT 42147 |||||||| || | || ||||| || || | || | || | || | | || | Sbjct 2879710 CTGGTCGG--GGGATGCCTTCCTTATC--TGGGTCTTGGCCTTCACATTCTCGATGGTAT 2879765 Query 42148 CGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCA 42207 |||| | || ||| || | |||||||||||||| | || ||||| || |||||||||| Sbjct 2879766 CGCTAGGTTTCACTTCCAGGGTGATGGTTTTGCCATTCAGGGTCTTCACGAAGATTTGCA 2879825 Query 42208 TTTTCAC 42214 |||| || Sbjct 2879826 TTTTGAC 2879832 >seq39 Length=7040410 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 3811356 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 3811297 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 3811296 TACTAACGAGGAT 3811284 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 3804837 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 3804778 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 3804777 ATACTAACGAGGA 3804765 >seq650 Length=1370792 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 29052 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 28993 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 28992 TACTAACGAGGA 28981 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 35970 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 35911 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 35910 TACTAACGAGGA 35899 >seq197 Length=3815976 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 234486 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 234545 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 234546 TACTAACGAGGA 234557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543173396701520