Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq9 96.9 4e-15
seq740 95.1 1e-14
seq1618 93.3 5e-14
seq24 93.3 5e-14
seq41 91.5 2e-13
seq39 91.5 2e-13
seq650 89.7 6e-13
seq197 89.7 6e-13
>seq9
Length=10989404
Score = 96.9 bits (106), Expect = 4e-15
Identities = 68/78 (87%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064
|||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 6494326 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 6494385
Query 57065 TATACTACCGAGGATTGA 57082
||||||| |||||| |||
Sbjct 6494386 TATACTAACGAGGACTGA 6494403
>seq740
Length=1116153
Score = 95.1 bits (104), Expect = 1e-14
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063
||||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 758831 TTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 758772
Query 57064 CTATACTACCGAGGA 57078
|||||||| ||||||
Sbjct 758771 CTATACTAACGAGGA 758757
>seq1618
Length=105872
Score = 93.3 bits (102), Expect = 5e-14
Identities = 71/83 (86%), Gaps = 1/83 (1%)
Strand=Plus/Minus
Query 56997 GAAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055
|||||||| || ||| || | | ||| |||||| ||||||||||||||||||||| ||
Sbjct 44507 GAAAAATTATCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 44448
Query 57056 ACTCACCACTATACTACCGAGGA 57078
|||||||||||||||| ||||||
Sbjct 44447 ACTCACCACTATACTAACGAGGA 44425
Score = 91.5 bits (100), Expect = 2e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 89919 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 89860
Query 57067 TACTACCGAGGATTG 57081
||||| |||||| ||
Sbjct 89859 TACTAACGAGGACTG 89845
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 70442 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 70383
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 70382 TACTAACGAGGA 70371
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 105265 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 105206
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 105205 TACTAACGAGGA 105194
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 41419 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 41360
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 41359 ATACTAACGAGGA 41347
>seq24
Length=8999101
Score = 93.3 bits (102), Expect = 5e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055
||| || | ||| | |||| |||||||||||| ||||| || | |||||| || | ||
Sbjct 2890514 CAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCCGACAGAGTATGCCCATC 2890573
Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115
|| |||||||| ||||| || || || || |||||||| | || | || || || ||
Sbjct 2890574 TTCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGGAATGCCTTCTTTATC 2890633
Query 42116 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 42175
| ||| || ||| | || | | || || | || || |||| |||||||||
Sbjct 2890634 CTGGATCTTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGACCTCGAGCGTGATGGT 2890693
Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211
|| || || || ||||| || || || ||||| ||
Sbjct 2890694 CTTCCCAGTGAGGGTCTTCACGAAAATCTGCATCTT 2890729
>seq41
Length=6870668
Score = 91.5 bits (100), Expect = 2e-13
Identities = 136/187 (73%), Gaps = 7/187 (4%)
Strand=Plus/Plus
Query 42030 TTGTAATCAGCCAGAGTCC-GCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTG 42088
||||| |||| ||||| | ||| ||| || |||||||| ||||| || ||||| | |||
Sbjct 2879651 TTGTAGTCAGAAAGAGTGCAGCT-GTCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTG 2879709
Query 42089 CTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGT 42147
|||||||| || | || ||||| || || | || | || | || | | || |
Sbjct 2879710 CTGGTCGG--GGGATGCCTTCCTTATC--TGGGTCTTGGCCTTCACATTCTCGATGGTAT 2879765
Query 42148 CGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCA 42207
|||| | || ||| || | |||||||||||||| | || ||||| || ||||||||||
Sbjct 2879766 CGCTAGGTTTCACTTCCAGGGTGATGGTTTTGCCATTCAGGGTCTTCACGAAGATTTGCA 2879825
Query 42208 TTTTCAC 42214
|||| ||
Sbjct 2879826 TTTTGAC 2879832
>seq39
Length=7040410
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 3811356 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 3811297
Query 57067 TACTACCGAGGAT 57079
||||| |||||||
Sbjct 3811296 TACTAACGAGGAT 3811284
Score = 87.8 bits (96), Expect = 2e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 3804837 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 3804778
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 3804777 ATACTAACGAGGA 3804765
>seq650
Length=1370792
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 29052 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 28993
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 28992 TACTAACGAGGA 28981
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 35970 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 35911
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 35910 TACTAACGAGGA 35899
>seq197
Length=3815976
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 234486 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 234545
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 234546 TACTAACGAGGA 234557
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543173396701520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |