Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq24 127 2e-24 seq41 87.8 2e-12 seq154 82.4 8e-11 >seq24 Length=8999101 Score = 127 bits (140), Expect = 2e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| ||| | || ||||||| || || || |||||||||||||| || | Sbjct 2890499 ACCACCACGCAGTCTCAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCCGA 2890558 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| ||||||||||| ||| |||| || || |||||||| ||||| Sbjct 2890559 CAGAGTATGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGG 2890618 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 ||| |||||||| || || | | || ||||| ||| ||| | ||||| || || | Sbjct 2890619 AATGCCTTCTTTATCCTGGA-TCTTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGA 2890677 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | || | || | |||||| || || | || || |||||||| ||||| || Sbjct 2890678 CCTCGAGCGTGATGGTCTTCCCAGTGAGGGTCTTCACGAAAATCTGCATCTT 2890729 >seq41 Length=6870668 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/159 (73%), Gaps = 3/159 (2%) Strand=Plus/Plus Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 |||||| ||||||||||| ||| | ||||||| ||||||||||| || || ||||| || Sbjct 2879674 GTCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGG--GGGATGCCTTCCTT 2879731 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 || || | || ||| ||| ||| | ||||| | | | |||||| | || | Sbjct 2879732 ATC-TGGGTCTTGGCCTTCACATTCTCGATGGTATCGCTAGGTTTCACTTCCAGGGTGAT 2879790 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||| ||||| ||| || || ||||| ||||||||||| Sbjct 2879791 GGTTTTGCCATTCAGGGTCTTCACGAAGATTTGCATTTT 2879829 >seq154 Length=4102096 Score = 82.4 bits (90), Expect = 8e-11 Identities = 118/168 (70%), Gaps = 9/168 (5%) Strand=Plus/Plus Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTG---------GTCGGGAGGAAT 64338 |||||| ||||||||||| || | ||||||| |||||| || | | ||||| Sbjct 1216779 GTCTTCCAGCTGCTTGCCCTCAAAGATGAGCCTCTGCTGCTGGTGGTGGTGGTGGGGAAT 1216838 Query 64339 TCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTC 64398 ||||| || | || || || ||| | ||| | ||||||| || |||||||| Sbjct 1216839 GCCTTCCTTATTCTGGATCTTGGCCTTCATTTTCTCGATGGTATCACTGGGCTCCACTTC 1216898 Query 64399 TACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | || | ||||||||||||||| || || | ||| || |||||||| Sbjct 1216899 CAGGGTGATGGTCTTGCCGGTCAAGGTCTTCATGAAGATCTGCATTTT 1216946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499608557015320