Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq24 127 2e-24
seq41 87.8 2e-12
seq154 82.4 8e-11
>seq24
Length=8999101
Score = 127 bits (140), Expect = 2e-24
Identities = 169/232 (73%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || |||| ||| | || ||||||| || || || |||||||||||||| || |
Sbjct 2890499 ACCACCACGCAGTCTCAAAACAAGATGAAGTGTGGACTCCTTTTGAATGTTGTAGTCCGA 2890558
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| || || | ||||| ||||||||||| ||| |||| || || |||||||| |||||
Sbjct 2890559 CAGAGTATGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGACGTTGCTGGTCAGGAGG 2890618
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394
||| |||||||| || || | | || ||||| ||| ||| | ||||| || || |
Sbjct 2890619 AATGCCTTCTTTATCCTGGA-TCTTGGCTTTCACATTCTCTATAGTATCTGAGGGCTCGA 2890677
Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
| || | || | |||||| || || | || || |||||||| ||||| ||
Sbjct 2890678 CCTCGAGCGTGATGGTCTTCCCAGTGAGGGTCTTCACGAAAATCTGCATCTT 2890729
>seq41
Length=6870668
Score = 87.8 bits (96), Expect = 2e-12
Identities = 116/159 (73%), Gaps = 3/159 (2%)
Strand=Plus/Plus
Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347
|||||| ||||||||||| ||| | ||||||| ||||||||||| || || ||||| ||
Sbjct 2879674 GTCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGG--GGGATGCCTTCCTT 2879731
Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407
|| || | || ||| ||| ||| | ||||| | | | |||||| | || |
Sbjct 2879732 ATC-TGGGTCTTGGCCTTCACATTCTCGATGGTATCGCTAGGTTTCACTTCCAGGGTGAT 2879790
Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
||| ||||| ||| || || ||||| |||||||||||
Sbjct 2879791 GGTTTTGCCATTCAGGGTCTTCACGAAGATTTGCATTTT 2879829
>seq154
Length=4102096
Score = 82.4 bits (90), Expect = 8e-11
Identities = 118/168 (70%), Gaps = 9/168 (5%)
Strand=Plus/Plus
Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTG---------GTCGGGAGGAAT 64338
|||||| ||||||||||| || | ||||||| |||||| || | | |||||
Sbjct 1216779 GTCTTCCAGCTGCTTGCCCTCAAAGATGAGCCTCTGCTGCTGGTGGTGGTGGTGGGGAAT 1216838
Query 64339 TCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTC 64398
||||| || | || || || ||| | ||| | ||||||| || ||||||||
Sbjct 1216839 GCCTTCCTTATTCTGGATCTTGGCCTTCATTTTCTCGATGGTATCACTGGGCTCCACTTC 1216898
Query 64399 TACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
| || | ||||||||||||||| || || | ||| || ||||||||
Sbjct 1216899 CAGGGTGATGGTCTTGCCGGTCAAGGTCTTCATGAAGATCTGCATTTT 1216946
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499608557015320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |